Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 3.7e-222 774.6 410 100.0
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 1.1e-213 746.5 398 99.2
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 2.2e-206 722.2 398 96.0
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 4.1e-197 691.4 399 92.2
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 1.2e-196 689.9 398 91.7
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 1.5e-191 672.9 398 89.7
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 3.7e-190 668.3 398 88.2
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 3.0e-163 578.9 395 75.4
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 3.0e-163 578.9 397 75.1
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 2.5e-162 575.9 395 73.9
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 7.4e-162 574.3 400 74.0
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 1.3e-161 573.5 397 75.1
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 1.1e-160 570.5 405 73.1
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 5.3e-160 568.2 399 73.7
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 6.9e-160 567.8 396 74.0
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 4.5e-159 565.1 397 73.8
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 1.0e-158 563.9 398 73.4
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 2.2e-158 562.8 400 72.2
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 3.8e-158 562.0 395 73.7
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 3.8e-158 562.0 398 73.6
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 6.5e-158 561.2 398 72.4
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 8.4e-158 560.8 393 73.8
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 8.4e-158 560.8 400 71.5
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 1.1e-157 560.5 397 72.8
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 1.9e-157 559.7 398 72.9
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 1.9e-157 559.7 398 73.6
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 3.2e-157 558.9 400 71.8
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 4.2e-157 558.5 397 72.5
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 7.1e-157 557.8 400 71.0
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 2.7e-156 555.8 395 72.9
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 6.0e-156 554.7 395 72.2
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 1.3e-155 553.5 399 72.9
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 1.8e-155 553.1 417 70.3
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 1.8e-155 553.1 417 70.3
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 2.3e-155 552.7 395 73.9
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 2.3e-155 552.7 397 72.5
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 3.0e-155 552.4 395 71.9
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 3.9e-155 552.0 395 73.7
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 6.7e-155 551.2 396 71.0
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 8.7e-155 550.8 395 71.9
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 8.7e-155 550.8 401 71.1
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 1.1e-154 550.4 397 71.3
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 1.9e-154 549.7 397 71.5
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 2.5e-154 549.3 398 71.4
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 2.5e-154 549.3 400 70.8
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 9.6e-154 547.4 399 72.4
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 1.3e-153 547.0 398 70.9
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 2.8e-153 545.8 398 70.6
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 3.7e-153 545.4 395 70.9
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 6.2e-153 544.7 397 70.8
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 1.1e-152 543.9 401 70.6
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 1.8e-152 543.1 399 71.4
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 2.4e-152 542.7 399 71.7
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 5.3e-152 541.6 397 70.5
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 9.0e-152 540.8 398 72.1
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 1.2e-151 540.4 400 69.2
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 2.6e-151 539.3 398 71.1
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 3.4e-151 538.9 399 71.2
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 4.5e-151 538.5 438 66.4
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 5.8e-151 538.1 396 69.4
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 7.6e-151 537.7 394 71.6
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 2.2e-150 536.2 400 68.5
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 2.2e-150 536.2 400 69.2
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 2.2e-150 536.2 400 67.5
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 2.9e-150 535.8 400 69.5
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 2.9e-150 535.8 400 69.2
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 3.8e-150 535.4 400 69.2
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 2.5e-149 532.7 395 70.6
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 4.2e-149 531.9 400 69.0
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 4.2e-149 531.9 396 70.5
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 2.1e-148 529.6 397 67.8
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 2.7e-148 529.3 400 68.0
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 2.7e-148 529.3 400 68.0
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 3.5e-148 528.9 395 70.4
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 4.6e-148 528.5 397 69.0
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 4.6e-148 528.5 400 69.0
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 4.6e-148 528.5 397 69.8
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 6.1e-148 528.1 400 68.2
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 1.3e-147 526.9 400 68.0
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 2.3e-147 526.2 397 68.8
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 3.0e-147 525.8 397 68.8
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 3.0e-147 525.8 396 69.2
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 1.1e-146 523.9 397 68.8
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 1.1e-146 523.9 400 68.0
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 1.9e-146 523.1 397 68.3
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 1.9e-146 523.1 397 68.3
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 1.9e-146 523.1 397 68.3
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 1.3e-145 520.4 398 68.1
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 1.6e-145 520.0 398 68.3
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 6.3e-145 518.1 398 69.6
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 8.2e-145 517.7 395 69.1
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 5.3e-144 515.0 415 65.5
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 5.3e-144 515.0 348 77.6
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 1.2e-143 513.8 399 67.7
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 1.7e-142 510.0 406 65.0
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 1.7e-142 510.0 401 67.8
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 9.4e-141 504.2 396 67.9
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 1.4e-139 500.4 396 65.9
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 1.1e-138 497.3 414 64.7
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 1.4e-136 490.3 400 64.0
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 1.8e-131 473.4 395 62.5
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 5.7e-130 468.4 396 63.1
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 8.0e-124 448.0 353 68.0
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 5.4e-112 408.7 300 73.0
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 1.7e-110 403.7 281 75.4
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 5.5e-109 398.7 395 58.2
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 1.8e-99 367.1 323 63.5
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 2.7e-95 353.2 266 68.8
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 4.7e-92 342.4 397 49.4
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 2.2e-89 333.6 396 47.7
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 6.0e-87 325.5 226 71.2
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.7e-86 323.9 408 45.6
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 8.9e-83 311.6 395 47.3
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 3.2e-72 276.6 197 71.1
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 4.1e-72 276.2 437 40.0
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 8.7e-62 241.9 230 59.6
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 8.1e-60 235.3 245 55.1
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 1.8e-51 207.6 281 49.1
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 4.3e-45 186.4 130 69.2
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 2.8e-44 183.7 236 51.7
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 1.5e-37 161.4 214 49.5
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 2.5e-37 160.6 114 67.5
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 1.4e-32 144.8 229 45.4
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 9.3e-32 142.1 217 42.4
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 1.8e-30 137.9 85 77.6
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 6.7e-30 136.0 85 76.5
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 8.7e-30 135.6 88 73.9
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 3.3e-29 133.7 86 74.4
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 1.5e-26 124.8 82 84.1
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 4.1e-19 100.1 99 47.5
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 3.4e-18 97.1 58 79.3
CAN.G689.5 Capsicum annuum HOM05D004547 ORTHO05D005133 2.5e-16 90.9 61 80.3
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 5.5e-16 89.7 58 82.8
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 1.2e-15 88.6 395 22.8
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 2.3e-14 84.3 95 52.6
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.5e-13 81.6 54 72.2
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 1.7e-12 78.2 346 25.4
Nitab4.5_0008254g0010 Nicotiana tabacum HOM05D017975 ORTHO05D016189 1.1e-11 75.5 166 34.3
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 5.5e-08 63.2 49 63.3


User provided reference genes

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