Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 0.0e+00 1435.2 709 100.0
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 0.0e+00 1355.1 707 94.1
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 0.0e+00 1209.5 707 85.3
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 0.0e+00 1193.3 736 82.9
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 0.0e+00 1152.5 733 79.3
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 0.0e+00 1139.8 707 81.5
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 0.0e+00 1121.3 568 97.7
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 0.0e+00 1088.2 707 77.5
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 3.7e-294 1014.6 713 69.1
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 1.6e-284 982.6 698 68.8
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 1.7e-283 979.2 678 69.8
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 6.5e-283 977.2 705 67.7
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 8.8e-280 966.8 708 67.1
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 7.5e-279 963.8 681 69.2
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 7.5e-279 963.8 684 68.6
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 6.3e-278 960.7 686 67.9
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 1.8e-277 959.1 686 67.8
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 1.8e-277 959.1 706 67.1
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 7.7e-276 953.7 717 66.7
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 1.1e-274 949.9 667 68.8
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 1.9e-274 949.1 694 66.1
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 7.2e-274 947.2 709 65.2
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 7.2e-274 947.2 684 68.6
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 1.0e-272 943.3 687 67.0
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 1.5e-271 939.5 680 67.4
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 1.5e-271 939.5 685 66.9
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 2.0e-271 939.1 705 66.1
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 3.4e-271 938.3 687 66.7
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 1.3e-270 936.4 686 66.5
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 1.3e-270 936.4 685 66.7
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 2.8e-270 935.3 703 64.9
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 1.4e-269 932.9 746 62.5
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 3.1e-269 931.8 671 67.8
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 4.1e-269 931.4 707 65.8
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 3.5e-268 928.3 650 67.5
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 7.7e-268 927.2 697 65.9
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 2.3e-267 925.6 710 65.6
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 5.0e-267 924.5 697 65.7
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 1.5e-266 922.9 673 66.0
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 1.6e-265 919.5 688 66.0
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 2.1e-265 919.1 713 64.4
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 5.2e-264 914.4 717 62.6
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 8.9e-264 913.7 687 65.8
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 1.2e-263 913.3 684 63.7
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 3.4e-263 911.8 743 61.6
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 4.4e-263 911.4 681 65.2
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 1.3e-262 909.8 684 64.3
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 2.2e-262 909.1 684 64.2
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 2.2e-262 909.1 675 66.2
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 2.8e-262 908.7 713 63.3
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 1.4e-261 906.4 704 63.6
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 1.4e-261 906.4 681 66.1
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 2.4e-261 905.6 713 64.0
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 4.1e-261 904.8 683 64.0
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 4.1e-261 904.8 680 64.6
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 1.2e-260 903.3 675 66.2
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 3.5e-260 901.7 684 63.5
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 5.9e-260 901.0 684 64.3
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 1.0e-259 900.2 683 63.5
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 1.3e-259 899.8 731 62.7
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 1.7e-259 899.4 679 64.2
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 8.6e-259 897.1 677 64.0
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 5.6e-258 894.4 673 64.2
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 5.6e-258 894.4 663 66.2
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 9.5e-258 893.6 690 62.9
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 2.1e-257 892.5 650 65.2
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 2.8e-257 892.1 678 64.0
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 3.6e-257 891.7 694 62.2
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 4.7e-257 891.3 675 64.7
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 1.4e-256 889.8 644 67.4
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 3.0e-256 888.6 679 63.6
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 6.8e-256 887.5 671 63.3
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 1.2e-255 886.7 684 62.6
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 5.8e-255 884.4 677 64.8
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 7.5e-255 884.0 704 61.2
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 2.9e-254 882.1 702 62.5
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 9.2e-253 877.1 662 63.9
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 3.5e-252 875.2 677 62.9
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 2.5e-250 869.0 679 63.3
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 9.5e-250 867.1 611 68.1
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 3.9e-243 845.1 703 60.6
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 3.9e-235 818.5 676 60.8
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 2.2e-230 802.7 669 59.3
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 7.1e-229 797.7 1002 44.7
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 3.5e-228 795.4 689 58.5
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 4.7e-225 785.0 617 64.0
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 3.1e-224 782.3 558 67.7
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 1.6e-220 770.0 626 61.2
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 1.5e-215 753.4 535 69.7
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 8.7e-211 737.6 707 55.0
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 3.3e-210 735.7 529 69.0
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 2.4e-208 729.6 678 54.7
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 7.6e-207 724.5 699 54.5
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 6.7e-203 711.4 514 66.7
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 3.5e-196 689.1 575 59.7
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 2.7e-180 636.3 659 48.9
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 3.0e-179 632.9 637 52.4
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 4.1e-176 622.5 674 48.7
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 2.9e-174 616.3 392 79.3
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 1.1e-173 614.4 428 69.2
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 2.9e-150 536.6 423 59.8
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 1.5e-146 524.2 359 70.2
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 2.7e-143 513.5 409 59.9
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 2.3e-134 483.8 501 48.7
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 6.4e-129 465.7 431 58.7
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 2.7e-119 433.7 358 59.8
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 4.0e-115 419.9 440 49.5
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.3e-105 388.3 330 57.9
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 9.3e-104 382.1 321 60.7
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 3.4e-98 363.6 296 60.1
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 5.4e-96 356.3 564 39.4
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 9.3e-96 355.5 277 63.5
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 7.4e-93 345.9 282 62.8
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 1.3e-89 335.1 351 51.0
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 4.3e-77 293.5 233 63.5
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 3.9e-70 270.4 385 39.7
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.9e-70 270.4 286 51.4
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 5.3e-67 260.0 653 30.3
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 1.4e-64 251.9 427 36.5
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 1.8e-59 235.0 570 30.5
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 1.2e-55 222.2 120 90.8
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 3.8e-41 174.1 284 36.6
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.4e-38 165.6 126 65.1
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 2.6e-37 161.4 353 36.0
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 9.8e-37 159.5 117 71.8
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.3e-33 149.1 212 42.0
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 4.3e-32 144.1 220 39.5
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 1.4e-30 139.0 103 67.0
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.3e-30 138.3 217 39.6
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.8e-27 128.6 125 52.8
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 4.4e-21 107.5 74 63.5
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 1.3e-20 105.9 84 58.3
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 1.0e-17 96.3 405 25.7
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 2.5e-16 91.7 151 42.4
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 2.6e-13 81.6 435 23.0
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.4e-13 80.9 64 59.4
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 9.8e-13 79.7 92 41.3
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 1.3e-12 79.3 135 35.6
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.3e-12 79.3 46 73.9
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.3e-12 79.3 160 39.4
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.7e-12 77.8 53 62.3
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 5.4e-11 73.9 46 69.6
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.2e-10 72.8 50 64.0
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 1.0e-09 69.7 69 43.5
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 6.6e-09 67.0 67 53.7
Atru.chr11.2270 Acer truncatum HOM05D005075 ORTHO05D037935 6.8e-06 57.0 73 46.6


User provided reference genes

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