Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 1.5e-230 802.4 377 100.0
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 3.6e-224 781.2 377 97.9
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 2.8e-216 755.0 377 94.2
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 3.7e-200 701.4 377 87.0
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 6.7e-186 654.1 420 75.7
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 7.5e-177 624.0 377 78.8
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 4.5e-166 588.2 334 82.9
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 1.4e-151 540.0 377 66.6
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 8.0e-147 524.2 378 65.1
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 2.3e-146 522.7 377 66.0
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 1.3e-144 516.9 400 62.5
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.7e-144 516.5 377 62.9
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 2.9e-144 515.8 377 63.7
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 3.7e-144 515.4 377 62.3
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 6.4e-144 514.6 377 63.4
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 1.1e-143 513.8 377 63.7
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 2.4e-143 512.7 378 63.8
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 5.0e-141 505.0 379 60.9
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 4.3e-140 501.9 378 62.2
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 5.6e-140 501.5 376 60.6
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 7.3e-140 501.1 376 60.6
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 2.1e-139 499.6 376 60.1
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 2.8e-139 499.2 378 61.9
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 2.8e-139 499.2 378 60.8
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 4.7e-139 498.4 377 61.8
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 4.7e-139 498.4 380 61.6
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 8.1e-139 497.7 376 59.0
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 2.3e-138 496.1 385 59.7
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 2.3e-138 496.1 362 64.9
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 1.2e-137 493.8 381 61.9
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 5.8e-137 491.5 377 60.5
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 2.9e-136 489.2 469 53.1
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 4.9e-136 488.4 377 61.0
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 8.3e-136 487.6 384 58.3
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 4.1e-135 485.3 382 62.3
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 7.1e-135 484.6 377 61.8
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 4.6e-134 481.9 379 60.2
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 7.8e-134 481.1 378 58.5
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 1.0e-133 480.7 379 58.8
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 1.9e-132 476.5 377 58.4
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 1.9e-132 476.5 378 59.3
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 5.6e-132 474.9 377 58.1
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 7.3e-132 474.6 379 58.8
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.2e-131 473.8 384 57.6
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 1.6e-131 473.4 381 58.0
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 2.1e-131 473.0 379 58.8
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 2.1e-131 473.0 379 57.5
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 1.1e-130 470.7 377 58.4
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 1.8e-130 469.9 386 59.1
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 2.3e-130 469.5 399 55.4
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 2.3e-130 469.5 381 57.0
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 2.3e-130 469.5 377 58.6
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 4.0e-130 468.8 381 58.3
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 4.0e-130 468.8 388 58.0
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 1.2e-129 467.2 405 54.6
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 2.0e-129 466.5 377 58.4
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 2.6e-129 466.1 381 57.7
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 3.4e-129 465.7 361 60.4
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 4.4e-129 465.3 376 58.2
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 9.9e-129 464.2 361 60.7
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 9.9e-129 464.2 406 55.9
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 1.7e-128 463.4 378 56.9
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 4.9e-128 461.8 381 57.7
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 4.9e-128 461.8 381 57.7
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 4.9e-128 461.8 377 58.1
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 1.9e-127 459.9 378 56.9
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 2.4e-127 459.5 378 58.2
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 9.2e-127 457.6 395 56.2
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 2.7e-126 456.1 376 57.4
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 6.0e-126 454.9 380 57.4
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 1.7e-125 453.4 377 55.4
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 1.7e-125 453.4 377 57.8
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 3.9e-125 452.2 347 59.1
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 3.9e-125 452.2 344 59.9
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 2.8e-123 446.0 384 56.8
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 4.9e-120 435.3 380 55.5
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 2.8e-115 419.5 349 56.4
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 7.6e-113 411.4 351 57.8
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.0e-109 401.0 308 61.0
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 5.1e-109 398.7 283 65.7
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 2.5e-108 396.4 377 50.4
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 1.3e-99 367.5 384 49.7
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 1.4e-98 364.0 326 53.4
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 1.8e-98 363.6 308 53.9
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 3.1e-98 362.8 352 50.3
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 5.7e-92 342.0 397 46.6
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 5.7e-92 342.0 379 46.2
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 1.1e-90 337.8 389 45.8
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.1e-90 336.3 249 60.6
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 9.0e-90 334.7 392 44.1
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 1.5e-89 334.0 306 52.6
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 1.4e-87 327.4 284 56.3
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 7.2e-87 325.1 379 43.8
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 5.0e-80 302.4 268 56.7
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.9e-79 300.4 307 50.8
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 2.5e-79 300.1 379 42.2
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 1.8e-74 283.9 377 40.6
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 2.6e-73 280.0 378 41.5
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 3.3e-68 263.1 353 41.4
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.2e-65 254.6 215 54.9
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 3.6e-46 189.9 303 35.6
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 9.8e-36 155.2 373 29.0
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 2.4e-34 150.6 370 28.1
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 3.2e-34 150.2 373 27.9
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 5.4e-34 149.4 373 27.6
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 7.0e-34 149.1 371 27.0
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 7.0e-34 149.1 371 27.0
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 7.0e-34 149.1 369 30.1
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 1.2e-33 148.3 375 29.3
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 1.2e-33 148.3 178 45.5
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 1.6e-33 147.9 373 29.2
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 1.6e-33 147.9 369 30.4
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 3.5e-33 146.7 380 28.4
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 3.5e-33 146.7 373 27.1
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 4.6e-33 146.4 374 30.7
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 7.8e-33 145.6 121 57.9
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 1.3e-32 144.8 371 28.6
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 2.3e-32 144.1 377 28.1
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 3.0e-32 143.7 377 29.7
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 3.9e-32 143.3 377 28.4
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 5.0e-32 142.9 377 29.2
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 6.6e-32 142.5 152 44.1
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 6.6e-32 142.5 376 29.8
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 8.6e-32 142.1 372 30.6
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 1.1e-31 141.7 371 29.1
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 1.1e-31 141.7 369 29.0
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 1.5e-31 141.4 372 30.6
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 1.9e-31 141.0 371 29.4
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 3.3e-31 140.2 372 28.0
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 3.3e-31 140.2 372 29.8
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 5.6e-31 139.4 369 30.1
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 9.5e-31 138.7 369 30.1
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 9.5e-31 138.7 372 29.6
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 1.2e-30 138.3 384 27.6
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 1.2e-30 138.3 369 29.8
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.6e-30 137.9 376 30.1
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 1.6e-30 137.9 376 30.1
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 1.6e-30 137.9 376 29.8
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 1.6e-30 137.9 369 29.5
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 2.1e-30 137.5 372 28.0
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 2.8e-30 137.1 376 29.8
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 3.6e-30 136.7 381 29.4
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 4.7e-30 136.3 370 29.2
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 6.2e-30 136.0 376 29.0
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 8.0e-30 135.6 373 29.8
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 1.0e-29 135.2 376 29.3
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 1.0e-29 135.2 351 30.8
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 1.4e-29 134.8 371 29.4
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.4e-29 134.8 376 29.8
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.4e-29 134.8 151 46.4
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 1.4e-29 134.8 372 29.6
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 1.8e-29 134.4 373 28.2
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 2.3e-29 134.0 395 28.9
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 2.3e-29 134.0 395 28.9
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 3.1e-29 133.7 369 30.1
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 5.2e-29 132.9 369 29.0
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 8.9e-29 132.1 369 29.5
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 1.5e-28 131.3 365 28.8
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 1.5e-28 131.3 378 29.4
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 9.8e-28 128.6 369 28.7
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 3.7e-27 126.7 130 46.2
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 1.1e-26 125.2 372 26.1
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 4.1e-26 123.2 369 28.2
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 2.0e-25 120.9 379 26.9
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.3e-24 118.2 132 43.9
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.1e-23 115.2 126 45.2
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 7.3e-23 112.5 86 60.5
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 3.1e-21 107.1 371 26.4
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 8.9e-21 105.5 245 29.4
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 1.7e-19 101.3 452 23.0
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.4e-18 98.2 74 62.2
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 1.2e-17 95.1 88 48.9
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 1.5e-15 88.2 224 31.7
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 1.5e-15 88.2 73 56.2
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 2.8e-14 84.0 77 50.6
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 6.8e-13 79.3 196 30.6
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 4.4e-12 76.6 59 54.2
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 2.9e-11 73.9 122 35.2
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 6.4e-11 72.8 55 58.2
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 9.2e-10 68.9 94 39.4
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 1.2e-09 68.6 212 25.5


User provided reference genes

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