Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 1.7e-168 597.0 648 100.0
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 7.5e-161 571.6 642 98.9
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 1.9e-143 513.8 611 98.2
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 2.6e-121 440.3 611 91.3
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 1.7e-88 331.3 621 80.4
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 6.3e-83 312.8 614 79.5
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 5.3e-82 309.7 619 79.8
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 9.1e-82 308.9 616 78.6
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 1.7e-80 304.7 611 82.2
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 2.5e-79 300.8 622 78.9
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 2.7e-78 297.4 612 80.7
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 2.7e-78 297.4 612 80.7
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 1.8e-77 294.7 623 76.4
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 2.4e-74 284.3 618 77.2
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 1.7e-72 278.1 617 76.3
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 3.8e-72 276.9 612 76.8
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 3.3e-71 273.9 616 76.3
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 2.1e-70 271.2 662 74.2
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 2.8e-70 270.8 627 75.8
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 3.6e-70 270.4 615 75.8
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 1.0e-69 268.9 617 77.5
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 1.8e-69 268.1 615 76.9
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 1.8e-69 268.1 614 75.7
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 3.0e-69 267.3 615 76.3
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 6.8e-69 266.2 620 74.7
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 6.8e-69 266.2 618 75.7
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.6e-68 264.2 626 74.9
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 4.4e-68 263.5 613 76.5
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 9.8e-68 262.3 617 74.9
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 1.3e-67 261.9 621 76.0
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 1.3e-67 261.9 613 76.3
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.4e-66 257.7 617 71.6
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 7.0e-66 256.1 570 80.7
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 1.2e-65 255.4 559 80.1
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 2.7e-65 254.2 615 72.5
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 4.5e-65 253.4 585 68.9
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 7.8e-65 252.7 615 72.5
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 1.0e-64 252.3 570 80.4
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 1.3e-64 251.9 618 75.7
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 3.8e-64 250.4 614 76.1
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 8.6e-64 249.2 195 67.7
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 1.5e-63 248.4 614 76.1
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 2.5e-63 247.7 615 76.1
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 2.8e-62 244.2 614 76.1
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 1.0e-61 242.3 242 57.4
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 1.4e-61 241.9 615 75.4
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 1.8e-61 241.5 616 75.8
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 6.8e-61 239.6 615 72.2
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 1.5e-60 238.4 620 56.6
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.5e-60 238.4 241 58.5
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 4.4e-60 236.9 619 63.8
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 5.8e-60 236.5 617 75.2
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 9.8e-60 235.7 621 75.0
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 1.3e-59 235.3 617 73.9
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 1.3e-59 235.3 601 62.7
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 1.7e-59 235.0 623 69.0
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 2.9e-59 234.2 619 75.1
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 3.7e-59 233.8 616 75.0
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 1.1e-58 232.3 548 83.0
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 5.4e-58 229.9 630 71.7
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 7.8e-57 226.1 228 55.3
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 3.0e-56 224.2 567 78.1
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 3.9e-56 223.8 591 74.8
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 5.0e-56 223.4 655 69.9
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 5.0e-56 223.4 616 70.5
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 2.5e-55 221.1 626 71.9
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 2.5e-55 221.1 626 71.7
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 2.5e-55 221.1 616 74.5
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 3.3e-55 220.7 619 74.6
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 5.6e-55 219.9 616 74.7
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 1.6e-54 218.4 620 73.7
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 3.6e-54 217.2 614 65.1
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 8.0e-54 216.1 258 51.9
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 1.1e-53 215.7 239 55.6
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 3.1e-53 214.2 239 55.2
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 6.8e-53 213.0 171 65.5
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 8.9e-53 212.6 616 71.6
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 1.5e-52 211.8 238 53.4
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 1.5e-52 211.8 616 72.2
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 3.4e-52 210.7 630 73.8
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 3.4e-52 210.7 567 78.5
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 3.4e-52 210.7 567 78.5
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 5.8e-52 209.9 567 78.3
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 5.8e-52 209.9 598 72.7
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 7.5e-52 209.5 471 90.9
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 7.5e-52 209.5 570 77.0
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 2.9e-51 207.6 237 52.3
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 2.9e-51 207.6 234 54.7
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 2.9e-51 207.6 234 54.7
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 3.7e-51 207.2 241 54.4
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 8.3e-51 206.1 243 52.3
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 1.1e-50 205.7 601 62.6
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 1.1e-50 205.7 221 55.7
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 1.4e-50 205.3 277 45.8
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 2.1e-49 201.4 618 72.0
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 2.1e-49 201.4 240 50.8
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 2.3e-48 198.0 184 58.7
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 8.6e-48 196.1 219 50.2
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 3.3e-47 194.1 615 72.8
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 6.2e-46 189.9 489 84.9
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 4.0e-45 187.2 121 74.4
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 6.8e-45 186.4 220 49.5
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 8.9e-45 186.0 217 54.4
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 4.4e-44 183.7 226 50.0
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 1.5e-39 168.7 575 70.3
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 1.4e-37 162.2 125 63.2
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 5.8e-36 156.8 185 55.1
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 5.8e-36 156.8 185 55.1
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 1.7e-35 155.2 182 54.9
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 8.4e-35 152.9 121 66.9
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 5.6e-31 140.2 207 42.0
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 9.0e-29 132.9 589 68.9
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 6.2e-22 110.2 239 86.2
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 1.1e-21 109.4 557 69.8
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 1.9e-18 98.6 206 39.3
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 2.1e-17 95.1 61 73.8
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 2.3e-16 91.7 52 84.6
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 5.1e-16 90.5 183 37.2
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 7.4e-15 86.7 186 37.6
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 4.8e-14 84.0 85 80.0
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 8.4e-11 73.2 162 35.8
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 1.0e-08 66.2 62 51.6
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 3.9e-08 64.3 238 34.5
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 3.9e-08 64.3 238 34.5
SGA_v2.0_scaffold68G22967 Striga asiatica HOM05D006250 ORTHO05D007107 8.7e-08 63.2 118 38.1
RcHm_v2.0_Chr6g0258861 Rosa chinensis HOM05D046827 ORTHO05D007107 8.2e-06 56.6 39 74.4


User provided reference genes

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