Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g005890.2 Solanum lycopersicum HOM05D006231 ORTHO05D007857 3.3e-83 311.6 151 100.0
Sopen05g001920 Solanum pennellii HOM05D006231 ORTHO05D007857 6.8e-81 303.9 151 98.0
PGSC0003DMG400004132 Solanum tuberosum HOM05D006231 ORTHO05D007857 1.2e-77 293.1 151 95.4
CAN.G505.18 Capsicum annuum HOM05D006231 ORTHO05D007857 7.3e-75 283.9 151 92.1
Nitab4.5_0001474g0130 Nicotiana tabacum HOM05D006231 ORTHO05D007857 1.6e-74 282.7 149 90.6
Nitab4.5_0004963g0030 Nicotiana tabacum HOM05D006231 ORTHO05D007857 1.4e-73 279.6 149 89.3
Peaxi162Scf00421g00419 Petunia axillaris HOM05D006231 ORTHO05D007857 3.2e-62 241.9 153 80.4
Dinv24894 Davidia involucrata HOM05D006231 ORTHO05D007857 7.4e-59 230.7 141 80.1
Thecc.02G247800 Theobroma cacao HOM05D006231 ORTHO05D007857 3.1e-57 225.3 149 72.5
Gohir.D02G165000 Gossypium hirsutum HOM05D006231 ORTHO05D007857 4.0e-57 224.9 141 75.2
Duzib248G0169 Durio zibethinus HOM05D006231 ORTHO05D007857 6.9e-57 224.2 149 71.8
CSS0002380 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 9.0e-57 223.8 140 79.3
CSS0044234 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 9.0e-57 223.8 140 79.3
CiPaw.05G148900 Carya illinoinensis HOM05D006231 ORTHO05D007857 2.0e-56 222.6 146 76.7
Cc11_g14350 Coffea canephora HOM05D006231 ORTHO05D007857 2.0e-56 222.6 142 76.1
Oeu046714.1 Olea europaea HOM05D006231 ORTHO05D007857 3.4e-56 221.9 142 74.6
Eucgr.B02548 Eucalyptus grandis HOM05D006231 ORTHO05D007857 9.9e-56 220.3 143 74.1
MELO3C012017.2 Cucumis melo HOM05D006231 ORTHO05D007857 1.3e-55 219.9 135 78.5
TAR629G0133 Trochodendron aralioides HOM05D006231 ORTHO05D007857 1.3e-55 219.9 142 74.6
Gorai.009G344200 Gossypium raimondii HOM05D006231 ORTHO05D007857 2.2e-55 219.2 142 71.8
Hma1.2p1_1017F.1_g248270 Hydrangea macrophylla HOM05D006231 ORTHO05D007857 2.2e-55 219.2 146 74.0
Ciclev10032202m.g Citrus clementina HOM05D006231 ORTHO05D007857 2.9e-55 218.8 145 73.8
MSTRG.613 Avicennia marina HOM05D006231 ORTHO05D007857 3.8e-55 218.4 142 74.6
CsaV3_5G031780 Cucumis sativus L. HOM05D006231 ORTHO05D007857 4.9e-55 218.0 135 77.8
QL03p062170 Quercus lobata HOM05D006231 ORTHO05D007857 6.4e-55 217.6 142 75.4
RcHm_v2.0_Chr4g0444351 Rosa chinensis HOM05D006231 ORTHO05D007857 6.4e-55 217.6 180 63.3
vmacro16274 Vaccinium macrocarpon HOM05D006231 ORTHO05D007857 6.4e-55 217.6 143 73.4
Gohir.D05G320900 Gossypium hirsutum HOM05D006231 ORTHO05D007857 8.4e-55 217.2 142 71.8
ClCG05G025120 Citrullus lanatus HOM05D006231 ORTHO05D007857 1.1e-54 216.9 137 78.1
Nn4g22867 Nelumbo nucifera HOM05D006231 ORTHO05D007857 1.1e-54 216.9 150 70.0
Sed0009573 Sechium edule HOM05D006231 ORTHO05D007857 1.1e-54 216.9 133 77.4
MD16G1088300 Malus domestica HOM05D006231 ORTHO05D007857 3.2e-54 215.3 163 66.3
Aqoxy3G00933 Aquilegia oxysepala HOM05D006231 ORTHO05D007857 4.2e-54 214.9 151 67.5
Haze_12158 Corylus avellana HOM05D006231 ORTHO05D007857 5.5e-54 214.5 139 77.7
Cfa009127 Carpinus fangiana HOM05D006231 ORTHO05D007857 9.3e-54 213.8 139 77.7
FvH4_4g34910 Fragaria vesca HOM05D006231 ORTHO05D007857 1.2e-53 213.4 177 63.8
CSS0037524 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.6e-53 213.0 144 69.4
Gohir.A05G318600 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.6e-53 213.0 142 71.1
Lj2g0015887 Lotus japonicus HOM05D006231 ORTHO05D007857 1.6e-53 213.0 146 69.9
EL10Ac6g13629 Beta vulgaris HOM05D006231 ORTHO05D007857 2.1e-53 212.6 164 63.4
Lalb_Chr09g0326451 Lupinus albus HOM05D006231 ORTHO05D007857 2.7e-53 212.2 150 70.0
COL.COLO4_19536 Corchorus olitorius HOM05D006231 ORTHO05D007857 3.5e-53 211.8 142 71.1
DCAR_024529 Daucus carota HOM05D006231 ORTHO05D007857 4.6e-53 211.5 149 67.1
arahy.Tifrunner.gnm1.ann1.FQS9XH Arachis hypogaea HOM05D006231 ORTHO05D007857 6.0e-53 211.1 148 68.9
arahy.Tifrunner.gnm1.ann1.XK2UET Arachis hypogaea HOM05D006231 ORTHO05D007857 1.0e-52 210.3 148 68.2
SalBow2G0481 Salvia bowleyana HOM05D006231 ORTHO05D007857 1.8e-52 209.5 142 70.4
GSVIVG01020181001 Vitis vinifera HOM05D006231 ORTHO05D007857 1.8e-52 209.5 141 73.0
Psat2g109920 Pisum sativum HOM05D006231 ORTHO05D007857 3.0e-52 208.8 143 72.0
Manes.01G197500 Manihot esculenta HOM05D006231 ORTHO05D007857 3.9e-52 208.4 156 64.7
TWI36G0577 Tripterygium wilfordii HOM05D006231 ORTHO05D007857 3.9e-52 208.4 141 69.5
Actinidia15012 Actinidia chinensis HOM05D006231 ORTHO05D007857 5.1e-52 208.0 132 76.5
Ah.03g132450 Amaranthus hybridus HOM05D006231 ORTHO05D007857 6.7e-52 207.6 160 65.6
THA.LOC104822056 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 6.7e-52 207.6 141 71.6
Atru.chr11.1975 Acer truncatum HOM05D006231 ORTHO05D007857 8.7e-52 207.2 147 68.0
Prupe.1G258300 Prunus persica HOM05D006231 ORTHO05D007857 8.7e-52 207.2 158 67.1
THA.LOC104822957 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 1.1e-51 206.8 149 67.8
Sc11g0001330 Simmondsia chinensis HOM05D006231 ORTHO05D007857 1.5e-51 206.5 141 70.2
Hund25325 Selenicereus undatus HOM05D006231 ORTHO05D007857 2.5e-51 205.7 134 74.6
C05p23180 Brassica napus HOM05D006231 ORTHO05D007857 3.3e-51 205.3 155 63.9
Lsat_1_v5_gn_8_158260 Lactuca sativa HOM05D006231 ORTHO05D007857 3.3e-51 205.3 154 67.5
Aa31LG7G7830 Aethionema arabicum HOM05D006231 ORTHO05D007857 5.6e-51 204.5 162 64.8
FAN12G2615 Fragaria x ananassa HOM05D006231 ORTHO05D007857 9.6e-51 203.8 159 66.7
Potri.010G095800 Populus trichocarpa HOM05D006231 ORTHO05D007857 9.6e-51 203.8 155 66.5
HanXRQChr08g0208971 Helianthus annuus HOM05D006231 ORTHO05D007857 1.6e-50 203.0 152 65.8
Carub.0001s2346 Capsella rubella HOM05D006231 ORTHO05D007857 3.7e-50 201.8 144 64.6
Thhalv10008192m.g Eutrema salsugineum HOM05D006231 ORTHO05D007857 3.7e-50 201.8 157 61.1
Glyma.01G034200 Glycine max HOM05D006231 ORTHO05D007857 4.8e-50 201.4 148 66.9
PGR119G0912 Punica granatum HOM05D006231 ORTHO05D007857 4.8e-50 201.4 151 64.9
BcaB07g32378 Brassica carinata HOM05D006231 ORTHO05D007857 8.1e-50 200.7 141 64.5
MD13G1088000 Malus domestica HOM05D006231 ORTHO05D007857 8.1e-50 200.7 159 66.0
Potri.008G146000 Populus trichocarpa HOM05D006231 ORTHO05D007857 1.1e-49 200.3 149 67.8
CANSAT01G1818 Cannabis sativa HOM05D006231 ORTHO05D007857 1.4e-49 199.9 138 71.7
AUR62005324 Chenopodium quinoa HOM05D006231 ORTHO05D007857 1.4e-49 199.9 142 68.3
ECA233G1652 Erigeron canadensis HOM05D006231 ORTHO05D007857 1.4e-49 199.9 146 66.4
Migut.L01438 Erythranthe guttata HOM05D006231 ORTHO05D007857 1.4e-49 199.9 143 67.1
PSO017G5161 Papaver somniferum HOM05D006231 ORTHO05D007857 1.4e-49 199.9 151 67.5
PSO478G5064 Papaver somniferum HOM05D006231 ORTHO05D007857 1.4e-49 199.9 151 67.5
Sp1g21370 Schrenkiella parvula HOM05D006231 ORTHO05D007857 1.8e-49 199.5 156 60.3
unitig_22.g6476 Utricularia gibba HOM05D006231 ORTHO05D007857 1.8e-49 199.5 143 69.2
BcaC05g26301 Brassica carinata HOM05D006231 ORTHO05D007857 2.4e-49 199.1 164 61.0
BolC5t31019H Brassica oleracea HOM05D006231 ORTHO05D007857 2.4e-49 199.1 164 61.0
CARHR024340 Cardamine hirsuta HOM05D006231 ORTHO05D007857 6.9e-49 197.6 155 62.6
AL1G37790 Arabidopsis lyrata HOM05D006231 ORTHO05D007857 9.0e-49 197.2 163 59.5
Medtr5g035060 Medicago truncatula HOM05D006231 ORTHO05D007857 3.4e-48 195.3 147 66.0
AT1G24040 Arabidopsis thaliana HOM05D006231 ORTHO05D007857 5.8e-48 194.5 164 59.1
AUR62013974 Chenopodium quinoa HOM05D006231 ORTHO05D007857 5.8e-48 194.5 142 67.6
TPR.G4354 Trifolium pratense HOM05D006231 ORTHO05D007857 5.8e-48 194.5 149 65.8
VMungo1215G3085 Vigna mungo HOM05D006231 ORTHO05D007857 5.8e-48 194.5 159 61.6
Ca_04621_v3 Cicer arietinum L. HOM05D006231 ORTHO05D007857 7.6e-48 194.1 145 66.2
Phvul.002G073400 Phaseolus vulgaris HOM05D006231 ORTHO05D007857 1.0e-47 193.7 165 60.6
FAN22G0458 Fragaria x ananassa HOM05D006231 ORTHO05D007857 4.9e-47 191.4 180 58.9
FAN07G0090 Fragaria x ananassa HOM05D006231 ORTHO05D007857 1.9e-46 189.5 173 60.7
Glyma.02G032100 Glycine max HOM05D006231 ORTHO05D007857 2.5e-46 189.1 151 62.9
FAN17G2958 Fragaria x ananassa HOM05D006231 ORTHO05D007857 3.2e-46 188.7 173 60.1
Lj3A1049T58 Lonicera japonica HOM05D006231 ORTHO05D007857 4.2e-46 188.3 165 60.0
Sabra08G0111000 Salix brachista HOM05D006231 ORTHO05D007857 4.2e-46 188.3 148 63.5
MBI15_g12952_MAGBIO Magnolia biondii HOM05D006231 ORTHO05D007857 5.5e-46 188.0 139 63.3
ATR1149G099 Amborella trichopoda HOM05D006231 ORTHO05D007857 3.5e-45 185.3 138 63.8
SGA_v2.0_scaffold166G38349 Striga asiatica HOM05D006231 ORTHO05D007857 2.3e-44 182.6 191 51.3
A09p40810 Brassica napus HOM05D006231 ORTHO05D007857 1.1e-43 180.3 125 64.0
BraA09t39576Z Brassica rapa HOM05D006231 ORTHO05D007857 1.1e-43 180.3 125 64.0
CDE10G0637 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 1.9e-43 179.5 144 61.1
CDE10G0954 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 1.6e-42 176.4 151 59.6
Rhsim12G0123300 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.8e-42 174.9 190 51.1
Sabra10G0068400 Salix brachista HOM05D006231 ORTHO05D007857 4.1e-41 171.8 205 47.3
SEGI_07841 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 6.5e-39 164.5 133 59.4
HPP92_010904 Vanilla planifolia HOM05D006231 ORTHO05D007857 6.1e-37 157.9 136 57.4
Zm00001eb424460 Zea mays HOM05D006231 ORTHO05D007857 2.3e-36 156.0 158 51.9
Gorai.005G184900 Gossypium raimondii HOM05D006231 ORTHO05D007857 1.4e-33 146.7 141 55.3
Os04g0465500 Oryza sativa ssp. japonica HOM05D006231 ORTHO05D007857 3.1e-33 145.6 146 52.7
Medtr5g035040 Medicago truncatula HOM05D006231 ORTHO05D007857 6.9e-33 144.4 133 59.4
Zm00001eb348680 Zea mays HOM05D006231 ORTHO05D007857 7.7e-32 141.0 156 49.4
SEGI_36756 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 1.0e-31 140.6 134 54.5
Pp3c2_6130 Physcomitrium patens HOM05D006231 ORTHO05D007857 3.0e-28 129.0 150 45.3
Pp3c2_6132 Physcomitrium patens HOM05D006231 ORTHO05D007857 3.0e-28 129.0 150 45.3
Mapoly0005s0071 Marchantia polymorpha HOM05D006231 ORTHO05D007857 1.1e-27 127.1 140 47.9
SMO365G0079 Selaginella moellendorffii HOM05D006231 ORTHO05D007857 2.0e-24 116.3 132 45.5
Medtr5g035050 Medicago truncatula HOM05D006231 ORTHO05D007857 1.0e-23 114.0 80 72.5
AagrBONN_evm.TU.Sc2ySwM_368.2752 Anthoceros agrestis HOM05D006231 ORTHO05D007857 7.2e-22 107.8 131 46.6
CBR_g40430 Chara braunii HOM05D017800 ORTHO05D019665 1.4e-20 103.6 135 43.0
Dinv31098 Davidia involucrata HOM05D006231 ORTHO05D007857 5.2e-20 101.7 67 76.1
Gohir.A03G141850 Gossypium hirsutum HOM05D006231 ORTHO05D007857 6.7e-20 101.3 62 74.2
Psat2g109880 Pisum sativum HOM05D006231 ORTHO05D007857 1.7e-18 96.7 64 68.8
TAR622G0489 Trochodendron aralioides HOM05D006231 ORTHO05D007857 3.6e-13 79.0 75 57.3
Cre10.g464750 Chlamydomonas reinhardtii HOM05D006231 ORTHO05D007857 1.6e-08 63.5 117 27.4


User provided reference genes

Program Settings