Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g150173.1 Solanum lycopersicum HOM05D007601 ORTHO05D009605 7.6e-39 163.3 80 100.0
Sopen06g036000 Solanum pennellii HOM05D007601 ORTHO05D009605 1.1e-21 106.3 51 100.0
CAN.G1209.15 Capsicum annuum HOM05D007601 ORTHO05D009605 1.0e-14 83.2 42 92.9
Nn4g25447 Nelumbo nucifera HOM05D007601 ORTHO05D009605 4.7e-12 74.3 51 68.6
Gohir.A11G107400 Gossypium hirsutum HOM05D007601 ORTHO05D009605 4.0e-11 71.2 45 71.1
CSS0036648 Camellia sinensis var. sinensis HOM05D007601 ORTHO05D009605 5.2e-11 70.9 51 66.7
Hma1.2p1_0965F.1_g242190 Hydrangea macrophylla HOM05D007601 ORTHO05D009605 5.2e-11 70.9 46 67.4
CSS0043622 Camellia sinensis var. sinensis HOM05D007601 ORTHO05D009605 6.7e-11 70.5 51 66.7
CiPaw.07G121600 Carya illinoinensis HOM05D007601 ORTHO05D009605 8.8e-11 70.1 51 58.8
COL.COLO4_23178 Corchorus olitorius HOM05D007601 ORTHO05D009605 1.5e-10 69.3 45 68.9
Dinv33148 Davidia involucrata HOM05D007601 ORTHO05D009605 2.0e-10 68.9 48 66.7
Duzib138G1106 Durio zibethinus HOM05D007601 ORTHO05D009605 2.0e-10 68.9 45 68.9
FAN28G1650 Fragaria x ananassa HOM05D007601 ORTHO05D009605 2.0e-10 68.9 51 66.7
arahy.Tifrunner.gnm1.ann1.UJ54IQ Arachis hypogaea HOM05D007601 ORTHO05D009605 2.6e-10 68.6 43 67.4
Gohir.D11G112200 Gossypium hirsutum HOM05D007601 ORTHO05D009605 2.6e-10 68.6 45 68.9
Manes.01G231900 Manihot esculenta HOM05D007601 ORTHO05D009605 2.6e-10 68.6 53 64.2
CDE05G3673 Ceratophyllum demersum HOM05D007601 ORTHO05D009605 3.3e-10 68.2 47 72.3
QL12p018497 Quercus lobata HOM05D007601 ORTHO05D009605 3.3e-10 68.2 51 58.8
VMungo1383G2396 Vigna mungo HOM05D007601 ORTHO05D009605 3.3e-10 68.2 38 76.3
arahy.Tifrunner.gnm1.ann1.FU6CGW Arachis hypogaea HOM05D007601 ORTHO05D009605 4.4e-10 67.8 43 67.4
MBI19_g32697_MAGBIO Magnolia biondii HOM05D007601 ORTHO05D009605 4.4e-10 67.8 51 58.8
FAN19G1881 Fragaria x ananassa HOM05D007601 ORTHO05D009605 5.7e-10 67.4 53 60.4
FvH4_1g26600 Fragaria vesca HOM05D007601 ORTHO05D009605 7.5e-10 67.0 51 62.7
Gorai.007G120500 Gossypium raimondii HOM05D007601 ORTHO05D009605 7.5e-10 67.0 45 66.7
TWI59G0276 Tripterygium wilfordii HOM05D007601 ORTHO05D009605 7.5e-10 67.0 49 63.3
FAN26G1400 Fragaria x ananassa HOM05D007601 ORTHO05D009605 9.7e-10 66.6 51 64.7
Rhsim01G0292900 Rhododendron simsii HOM05D007601 ORTHO05D009605 9.7e-10 66.6 43 69.8
THA.LOC104815915 Tarenaya hassleriana HOM05D007601 ORTHO05D009605 9.7e-10 66.6 42 69.0
Migut.D00044 Erythranthe guttata HOM05D007601 ORTHO05D009605 1.3e-09 66.2 51 58.8
Glyma.03G222200 Glycine max HOM05D007601 ORTHO05D009605 1.7e-09 65.9 40 72.5
Potri.002G191200 Populus trichocarpa HOM05D007601 ORTHO05D009605 1.7e-09 65.9 44 68.2
Glyma.19G219400 Glycine max HOM05D007601 ORTHO05D009605 2.2e-09 65.5 40 72.5
TPR.G4122 Trifolium pratense HOM05D007601 ORTHO05D009605 2.8e-09 65.1 40 72.5
Atru.chr5.923 Acer truncatum HOM05D007601 ORTHO05D009605 3.7e-09 64.7 41 70.7
RcHm_v2.0_Chr3g0486741 Rosa chinensis HOM05D007601 ORTHO05D009605 3.7e-09 64.7 45 64.4
Cpa.g.c29544.1 Carica papaya HOM05D007601 ORTHO05D009605 4.8e-09 64.3 44 68.2
DCAR_002918 Daucus carota HOM05D007601 ORTHO05D009605 4.8e-09 64.3 51 56.9
Ciclev10022849m.g Citrus clementina HOM05D007601 ORTHO05D009605 8.2e-09 63.5 40 70.0
MSTRG.18076 Avicennia marina HOM05D007601 ORTHO05D009605 1.1e-08 63.2 51 56.9
Eucgr.H00897 Eucalyptus grandis HOM05D007601 ORTHO05D009605 1.1e-08 63.2 50 58.0
Thecc.01G320300 Theobroma cacao HOM05D007601 ORTHO05D009605 1.1e-08 63.2 45 64.4
Ca_09231_v3 Cicer arietinum L. HOM05D007601 ORTHO05D009605 1.4e-08 62.8 40 67.5
Oeu044742.1 Olea europaea HOM05D007601 ORTHO05D009605 1.4e-08 62.8 51 56.9
Prupe.3G005400 Prunus persica HOM05D007601 ORTHO05D009605 1.4e-08 62.8 45 62.2
Sabra02G0164400 Salix brachista HOM05D007601 ORTHO05D009605 1.4e-08 62.8 48 64.6
Aa31LG5G1450 Aethionema arabicum HOM05D007601 ORTHO05D009605 1.8e-08 62.4 41 65.9
Medtr7g109980 Medicago truncatula HOM05D007601 ORTHO05D009605 1.8e-08 62.4 40 65.0
PSO210G6513 Papaver somniferum HOM05D007601 ORTHO05D009605 1.8e-08 62.4 44 61.4
Lj1g0003568 Lotus japonicus HOM05D007601 ORTHO05D009605 2.4e-08 62.0 38 71.1
CANSAT25G0069 Cannabis sativa HOM05D007601 ORTHO05D009605 3.1e-08 61.6 46 60.9
Thhalv10029076m.g Eutrema salsugineum HOM05D007601 ORTHO05D009605 3.1e-08 61.6 43 62.8
Carub.0006s3532 Capsella rubella HOM05D007601 ORTHO05D009605 4.1e-08 61.2 51 56.9
GSVIVG01028182001 Vitis vinifera HOM05D007601 ORTHO05D009605 4.1e-08 61.2 51 54.9
PSO761G0263 Papaver somniferum HOM05D007601 ORTHO05D009605 5.3e-08 60.8 40 65.0
Hund09590 Selenicereus undatus HOM05D007601 ORTHO05D009605 5.3e-08 60.8 44 63.6
BcaB01g02392 Brassica carinata HOM05D007601 ORTHO05D009605 7.0e-08 60.5 41 61.0
A03p31410 Brassica napus HOM05D007601 ORTHO05D009605 7.0e-08 60.5 41 61.0
Phvul.001G215600 Phaseolus vulgaris HOM05D007601 ORTHO05D009605 7.0e-08 60.5 38 68.4
CARHR249870 Cardamine hirsuta HOM05D007601 ORTHO05D009605 9.1e-08 60.1 41 58.5
MELO3C012921.2 Cucumis melo HOM05D007601 ORTHO05D009605 9.1e-08 60.1 49 53.1
Sc14g0006440 Simmondsia chinensis HOM05D007601 ORTHO05D009605 9.1e-08 60.1 41 65.9
TAR633G2747 Trochodendron aralioides HOM05D007601 ORTHO05D009605 9.1e-08 60.1 41 61.0
ClCG10G011680 Citrullus lanatus HOM05D007601 ORTHO05D009605 1.6e-07 59.3 49 51.0
Lalb_Chr04g0260071 Lupinus albus HOM05D007601 ORTHO05D009605 1.6e-07 59.3 41 63.4
BcaC01g06793 Brassica carinata HOM05D007601 ORTHO05D009605 2.0e-07 58.9 41 58.5
BcaC01g06795 Brassica carinata HOM05D007601 ORTHO05D009605 2.0e-07 58.9 41 58.5
BolC3t16113H Brassica oleracea HOM05D007601 ORTHO05D009605 2.0e-07 58.9 41 58.5
BraA03t12322Z Brassica rapa HOM05D007601 ORTHO05D009605 2.0e-07 58.9 41 58.5
AL6G51380 Arabidopsis lyrata HOM05D007601 ORTHO05D009605 2.7e-07 58.5 41 58.5
HanXRQChr01g0010181 Helianthus annuus HOM05D007601 ORTHO05D009605 3.5e-07 58.2 42 61.9
MD17G1280000 Malus domestica HOM05D007601 ORTHO05D009605 3.5e-07 58.2 41 63.4
MD09G1287800 Malus domestica HOM05D007601 ORTHO05D009605 4.5e-07 57.8 41 63.4
AT4G01897 Arabidopsis thaliana HOM05D007601 ORTHO05D009605 7.7e-07 57.0 41 56.1
CsaV3_3G031680 Cucumis sativus L. HOM05D007601 ORTHO05D009605 7.7e-07 57.0 49 51.0
Sp6g01760 Schrenkiella parvula HOM05D007601 ORTHO05D009605 7.7e-07 57.0 40 57.5
C03p38320 Brassica napus HOM05D007601 ORTHO05D009605 1.0e-06 56.6 41 56.1
ECA248G1243 Erigeron canadensis HOM05D007601 ORTHO05D009605 1.0e-06 56.6 42 59.5
Sed0008912 Sechium edule HOM05D007601 ORTHO05D009605 1.3e-06 56.2 43 53.5
Zm00001eb043090 Zea mays HOM05D007601 ORTHO05D009605 1.3e-06 56.2 38 65.8
Psat3g018760 Pisum sativum HOM05D007601 ORTHO05D009605 2.2e-06 55.5 40 60.0
Cc01_g21960 Coffea canephora HOM05D007601 ORTHO05D009605 2.9e-06 55.1 44 56.8


User provided reference genes

Program Settings