Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 4.5e-161 571.2 295 100.0
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 1.4e-159 566.2 295 99.0
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.7e-136 489.6 285 88.4
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 6.3e-131 471.1 296 81.4
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.5e-121 438.7 298 77.5
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 3.8e-67 259.2 286 51.0
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 8.4e-67 258.1 295 51.5
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 4.2e-66 255.8 262 56.5
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 3.3e-63 246.1 297 47.1
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 2.8e-62 243.0 288 50.0
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 4.8e-62 242.3 277 49.5
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 1.6e-57 227.3 261 47.9
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 1.1e-50 204.5 295 40.0
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 9.3e-50 201.4 279 45.5
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 9.3e-50 201.4 277 44.8
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.0e-44 183.7 299 42.1
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 5.1e-40 169.1 267 41.9
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.1e-39 167.9 300 37.3
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.7e-38 164.1 280 37.5
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 2.4e-37 160.2 300 38.7
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 1.3e-35 154.5 297 37.4
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 5.0e-35 152.5 299 38.1
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 2.5e-34 150.2 290 38.6
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 4.2e-34 149.4 253 38.7
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 1.2e-33 147.9 299 38.5
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 1.0e-32 144.8 279 36.9
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 1.0e-32 144.8 298 37.9
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 6.7e-32 142.1 286 36.4
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 1.5e-31 141.0 263 37.6
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 3.3e-31 139.8 284 35.6
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.3e-30 137.9 293 36.5
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 2.2e-30 137.1 264 37.1
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 8.2e-30 135.2 268 36.9
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 1.1e-29 134.8 268 37.7
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 2.4e-29 133.7 262 37.8
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.2e-28 131.3 280 36.1
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 4.5e-28 129.4 276 37.3
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 5.9e-28 129.0 280 35.0
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 1.3e-27 127.9 293 33.1
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 1.7e-27 127.5 269 35.7
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 2.2e-27 127.1 283 34.3
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 2.9e-27 126.7 276 34.4
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.9e-27 126.7 278 33.1
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 5.0e-27 125.9 299 33.8
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 5.0e-27 125.9 266 36.1
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 6.5e-27 125.6 263 32.7
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 6.5e-27 125.6 296 32.1
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 1.1e-26 124.8 268 35.4
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 1.5e-26 124.4 281 35.2
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.9e-26 124.0 297 36.7
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.5e-26 122.5 264 35.2
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 7.2e-26 122.1 271 36.5
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 7.2e-26 122.1 286 32.9
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 1.2e-25 121.3 294 31.6
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 1.2e-25 121.3 285 33.7
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 1.2e-25 121.3 262 35.5
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 2.7e-25 120.2 261 33.3
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 3.6e-25 119.8 270 34.4
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 6.1e-25 119.0 277 34.3
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 6.1e-25 119.0 278 32.7
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 8.0e-25 118.6 281 32.7
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 8.0e-25 118.6 277 33.6
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 8.0e-25 118.6 277 33.6
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 8.0e-25 118.6 262 35.5
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.0e-24 118.2 264 34.1
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.8e-24 117.5 274 34.7
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 3.0e-24 116.7 278 34.9
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 8.8e-24 115.2 301 31.2
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 2.0e-23 114.0 283 32.9
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 3.3e-23 113.2 268 33.6
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 3.3e-23 113.2 253 34.8
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.7e-23 112.5 269 33.8
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 7.4e-23 112.1 291 34.7
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 9.7e-23 111.7 261 34.5
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.7e-22 110.9 264 33.7
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.2e-22 110.5 122 48.4
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.8e-22 110.2 284 34.5
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 2.8e-22 110.2 271 35.1
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 2.8e-22 110.2 274 34.3
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.7e-22 109.8 275 32.7
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 8.2e-22 108.6 301 30.6
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.4e-21 107.8 117 51.3
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.4e-21 107.8 261 33.0
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 1.4e-21 107.8 274 34.7
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 1.8e-21 107.5 276 30.4
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 5.3e-21 105.9 283 32.9
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 7.0e-21 105.5 93 60.2
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 9.1e-21 105.1 268 32.1
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 9.1e-21 105.1 269 33.8
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 1.6e-20 104.4 244 34.4
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 7.7e-20 102.1 281 33.1
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 2.2e-19 100.5 258 30.6
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 5.0e-19 99.4 279 30.8
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 8.5e-19 98.6 130 48.5
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 8.5e-19 98.6 284 32.7
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 4.2e-18 96.3 256 32.4
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 7.2e-18 95.5 268 30.6
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 9.4e-18 95.1 258 31.8
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 2.7e-17 93.6 221 33.9
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 8.0e-17 92.0 260 33.5
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.4e-16 91.3 263 29.7
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 1.8e-16 90.9 266 30.1
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.3e-16 90.5 266 30.1
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 6.8e-16 89.0 269 27.9
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 8.8e-16 88.6 282 29.1
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.0e-15 87.4 254 28.7
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.4e-15 86.7 262 31.7
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 3.4e-15 86.7 152 37.5
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 4.4e-15 86.3 258 29.5
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 5.7e-15 85.9 182 35.7
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 5.7e-15 85.9 279 29.0
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 9.7e-15 85.1 220 30.0
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 1.3e-14 84.7 281 28.8
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.3e-14 84.7 264 27.7
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 1.3e-14 84.7 280 29.3
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.2e-14 84.0 66 65.2
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 1.4e-13 81.3 269 31.2
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 2.4e-13 80.5 225 36.4
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.1e-13 80.1 207 32.9
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 4.1e-13 79.7 252 31.3
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 9.1e-13 78.6 263 29.7
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.2e-12 78.2 115 43.5
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 4.5e-12 76.3 125 38.4
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 5.9e-12 75.9 77 50.6
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.0e-11 75.1 129 38.8
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.0e-11 75.1 72 54.2
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.3e-11 74.7 275 26.2
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 1.3e-11 74.7 102 43.1
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 1.3e-11 74.7 66 56.1
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 1.3e-11 74.7 67 56.7
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 2.9e-11 73.6 67 52.2
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 3.8e-11 73.2 67 52.2
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 3.8e-11 73.2 258 28.3
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 6.5e-11 72.4 105 41.0
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.1e-10 71.6 66 56.1
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.1e-10 71.6 66 56.1
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 1.9e-10 70.9 156 34.6
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 2.5e-10 70.5 135 37.8
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 3.2e-10 70.1 270 27.4
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 3.2e-10 70.1 114 41.2
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 4.2e-10 69.7 111 40.5
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.2e-10 69.7 111 40.5
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.2e-10 69.7 111 40.5
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 5.5e-10 69.3 216 31.0
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 5.5e-10 69.3 286 27.6
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 9.4e-10 68.6 243 29.2
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 9.4e-10 68.6 66 53.0
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.2e-09 68.2 91 44.0
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 1.6e-09 67.8 128 37.5
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 1.6e-09 67.8 224 33.0
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 2.1e-09 67.4 158 31.6
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 2.7e-09 67.0 272 25.4
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 2.7e-09 67.0 63 57.1
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.7e-09 67.0 248 29.0
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 3.6e-09 66.6 140 32.1
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 3.6e-09 66.6 252 31.0
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 3.6e-09 66.6 141 39.0
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 3.6e-09 66.6 63 57.1
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 4.7e-09 66.2 96 40.6
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 6.1e-09 65.9 74 50.0
Mapoly0074s0020 Marchantia polymorpha HOM05D003937 ORTHO05D004583 1.0e-08 65.1 215 32.6
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 1.8e-08 64.3 63 55.6
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.3e-08 63.9 119 34.5
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 6.8e-08 62.4 67 47.8
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 6.8e-08 62.4 60 51.7
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 8.8e-08 62.0 67 52.2
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 8.8e-08 62.0 63 50.8
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 1.2e-07 61.6 198 31.3
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.2e-07 61.6 69 44.9
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 2.6e-07 60.5 56 55.4
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 4.4e-07 59.7 159 28.3
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 2.8e-06 57.0 186 29.0


User provided reference genes

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