Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 4.2e-297 1023.8 492 100.0
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 3.3e-273 944.5 460 98.9
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 5.2e-271 937.2 459 98.3
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 7.8e-267 923.3 480 92.5
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 3.2e-260 901.4 486 88.7
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 1.7e-253 879.0 454 91.6
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 2.8e-200 702.2 461 72.9
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 4.5e-198 694.9 460 73.7
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 6.5e-197 691.0 460 70.9
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 1.9e-196 689.5 461 71.8
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 7.2e-196 687.6 460 71.7
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 1.4e-194 683.3 461 71.1
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 3.3e-193 678.7 477 69.2
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 3.7e-192 675.2 467 70.0
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 1.8e-191 672.9 472 68.6
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 1.0e-189 667.2 497 66.4
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 2.2e-189 666.0 461 69.0
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 6.5e-189 664.5 460 70.9
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 1.8e-186 656.4 461 69.6
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 5.1e-186 654.8 458 69.4
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 1.1e-185 653.7 461 69.0
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 3.3e-185 652.1 461 69.0
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 2.8e-184 649.0 452 69.0
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 3.7e-184 648.7 460 68.9
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 1.1e-183 647.1 454 68.7
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 3.1e-183 645.6 460 67.8
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 4.1e-183 645.2 454 68.3
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 4.1e-183 645.2 463 65.0
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 5.3e-183 644.8 461 68.5
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 5.3e-183 644.8 463 68.0
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 9.1e-183 644.0 463 68.0
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 1.3e-181 640.2 470 65.7
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 5.0e-181 638.3 458 65.7
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 5.0e-181 638.3 458 67.0
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 1.1e-180 637.1 462 66.2
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 1.4e-180 636.7 454 68.5
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 2.5e-180 636.0 460 66.7
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 3.2e-180 635.6 454 67.8
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 4.2e-180 635.2 462 68.0
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 9.4e-180 634.0 450 67.6
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 1.6e-179 633.3 458 65.3
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 1.6e-179 633.3 460 66.5
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 4.7e-179 631.7 454 67.4
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 1.4e-178 630.2 460 66.3
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 1.1e-177 627.1 455 67.3
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 1.1e-177 627.1 461 66.2
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 2.0e-177 626.3 457 66.5
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 5.7e-177 624.8 458 66.8
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 3.1e-175 619.0 457 67.2
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 2.0e-174 616.3 457 65.6
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 3.5e-174 615.5 457 67.2
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 3.2e-172 609.0 455 64.6
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 1.2e-171 607.1 468 63.2
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 8.0e-171 604.4 455 64.0
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 8.0e-171 604.4 466 63.1
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 1.0e-170 604.0 455 65.1
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 1.4e-170 603.6 460 65.2
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 2.3e-170 602.8 456 63.2
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 9.7e-169 597.4 459 61.7
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 3.7e-168 595.5 456 62.5
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 1.1e-167 594.0 455 61.8
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 9.1e-167 590.9 455 62.6
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 1.9e-164 583.2 456 63.2
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 2.5e-164 582.8 499 56.9
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 4.7e-163 578.6 457 62.4
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 4.7e-163 578.6 463 61.6
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 4.7e-163 578.6 463 61.6
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 3.0e-162 575.9 457 62.4
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 8.8e-162 574.3 457 61.9
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 2.2e-160 569.7 459 61.0
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 8.3e-160 567.8 461 60.1
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 1.1e-159 567.4 455 60.7
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 4.1e-159 565.5 457 61.3
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 4.1e-159 565.5 455 60.7
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 4.5e-158 562.0 457 60.6
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 4.5e-158 562.0 459 60.3
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 1.0e-157 560.8 456 61.0
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 1.0e-157 560.8 456 61.0
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 1.5e-156 557.0 459 61.0
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 1.5e-156 557.0 459 61.0
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 1.9e-156 556.6 459 59.9
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 3.3e-156 555.8 456 60.7
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 3.3e-156 555.8 454 60.4
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 1.2e-155 553.9 456 59.9
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 2.1e-155 553.1 461 58.8
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 2.1e-155 553.1 454 59.7
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 3.6e-155 552.4 453 58.7
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 5.2e-154 548.5 459 58.6
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 7.5e-153 544.7 454 59.0
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 7.5e-153 544.7 463 56.8
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 6.3e-152 541.6 453 56.5
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 8.3e-152 541.2 455 58.0
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 4.9e-144 515.4 467 54.6
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 1.3e-107 394.4 451 46.1
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 7.6e-97 358.6 452 44.0
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 1.6e-91 340.9 457 42.0
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 1.0e-88 331.6 463 41.5
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.4e-82 310.5 280 53.9
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 7.7e-81 305.4 251 61.4
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 3.3e-76 290.0 501 35.5
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 3.4e-73 280.0 262 52.3
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 1.1e-42 178.7 169 53.8
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 2.4e-42 177.6 166 55.4
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 2.0e-41 174.5 235 43.4
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 7.7e-41 172.6 205 43.4
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 5.5e-39 166.4 195 45.1
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 3.2e-34 150.6 189 44.4
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 3.9e-32 143.7 92 69.6
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 4.9e-27 126.7 83 77.1
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 7.3e-23 112.8 198 35.4
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 3.1e-21 107.5 212 32.5
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 1.2e-20 105.5 83 67.5
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 1.5e-20 105.1 167 35.3
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 2.0e-20 104.8 87 64.4
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 8.6e-16 89.4 60 75.0
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 5.8e-12 76.6 111 34.2
MCO09G352 Micromonas commoda HOM05D006313 ORTHO05D007853 6.4e-11 73.2 196 30.1
Eucgr.F04351 Eucalyptus grandis HOM05D002322 ORTHO05D002536 8.6e-08 62.8 196 29.1
SGA_v2.0_scaffold42G15940 Striga asiatica HOM05D002322 ORTHO05D002536 2.5e-07 61.2 134 29.9
MBI16_g07660_MAGBIO Magnolia biondii HOM05D002322 ORTHO05D002536 5.6e-07 60.1 134 29.9
CDE10G1194 Ceratophyllum demersum HOM05D002322 ORTHO05D002536 7.3e-07 59.7 113 29.2
Zm00001eb305500 Zea mays HOM05D000563 ORTHO05D000536 2.1e-06 58.2 123 34.1
TPR.G1305 Trifolium pratense HOM05D002322 ORTHO05D002536 4.7e-06 57.0 136 27.9
unitig_21.g20268 Utricularia gibba HOM05D002322 ORTHO05D002536 6.2e-06 56.6 134 29.1


User provided reference genes

Program Settings