Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g082280.3 Solanum lycopersicum HOM05D003764 ORTHO05D004356 4.5e-250 867.5 443 100.0
Sopen04g035900 Solanum pennellii HOM05D003764 ORTHO05D004356 8.3e-244 846.7 450 97.3
PGSC0003DMG400009974 Solanum tuberosum HOM05D003764 ORTHO05D004356 4.4e-237 824.3 438 91.1
Nitab4.5_0000588g0130 Nicotiana tabacum HOM05D003764 ORTHO05D004356 1.6e-199 699.5 458 74.9
Peaxi162Scf00104g00322 Petunia axillaris HOM05D003764 ORTHO05D004356 2.1e-186 656.0 437 74.1
Solyc12g094550.2 Solanum lycopersicum HOM05D003764 ORTHO05D004356 1.8e-161 573.2 443 64.1
Peaxi162Scf00064g01131 Petunia axillaris HOM05D003764 ORTHO05D004356 8.8e-161 570.9 354 75.1
Nitab4.5_0003544g0010 Nicotiana tabacum HOM05D003764 ORTHO05D004356 9.7e-160 567.4 430 67.2
PGSC0003DMG400029320 Solanum tuberosum HOM05D003764 ORTHO05D004356 9.7e-160 567.4 440 63.6
Oeu035836.1 Olea europaea HOM05D003764 ORTHO05D004356 3.7e-159 565.5 435 64.4
Sopen12g031450 Solanum pennellii HOM05D003764 ORTHO05D004356 3.7e-159 565.5 443 63.4
Nitab4.5_0000699g0100 Nicotiana tabacum HOM05D003764 ORTHO05D004356 8.2e-159 564.3 354 74.6
Dinv31931 Davidia involucrata HOM05D003764 ORTHO05D004356 1.6e-157 560.1 434 64.1
GSVIVG01008681001 Vitis vinifera HOM05D003764 ORTHO05D004356 1.6e-154 550.1 428 63.1
FAN27G3424 Fragaria x ananassa HOM05D003764 ORTHO05D004356 3.6e-154 548.9 437 61.3
Nn5g30922 Nelumbo nucifera HOM05D003764 ORTHO05D004356 5.2e-153 545.0 439 60.4
QL02p013934 Quercus lobata HOM05D003764 ORTHO05D004356 8.8e-153 544.3 443 60.3
RcHm_v2.0_Chr6g0304171 Rosa chinensis HOM05D003764 ORTHO05D004356 4.4e-152 542.0 437 60.0
MD08G1003100 Malus domestica HOM05D003764 ORTHO05D004356 7.5e-152 541.2 443 60.9
FAN15G2102 Fragaria x ananassa HOM05D003764 ORTHO05D004356 9.7e-152 540.8 437 60.2
FvH4_2g37560 Fragaria vesca HOM05D003764 ORTHO05D004356 2.8e-151 539.3 437 60.0
Oeu021826.1 Olea europaea HOM05D003764 ORTHO05D004356 2.8e-151 539.3 435 61.8
Cc10_g00740 Coffea canephora HOM05D003764 ORTHO05D004356 3.1e-150 535.8 428 62.9
Rhsim06G0008200 Rhododendron simsii HOM05D003764 ORTHO05D004356 5.3e-150 535.0 391 64.7
Actinidia17035 Actinidia chinensis HOM05D003764 ORTHO05D004356 1.2e-149 533.9 435 60.9
VMungo1309G0568 Vigna mungo HOM05D003764 ORTHO05D004356 1.2e-149 533.9 358 68.4
Phvul.009G021800 Phaseolus vulgaris HOM05D003764 ORTHO05D004356 3.5e-149 532.3 355 69.0
Nn6g31748 Nelumbo nucifera HOM05D003764 ORTHO05D004356 4.5e-149 531.9 435 62.3
Haze_22757 Corylus avellana HOM05D003764 ORTHO05D004356 7.7e-149 531.2 441 59.9
Manes.05G135000 Manihot esculenta HOM05D003764 ORTHO05D004356 1.3e-148 530.4 439 59.7
Prupe.1G355100 Prunus persica HOM05D003764 ORTHO05D004356 1.7e-148 530.0 449 58.1
Actinidia15487 Actinidia chinensis HOM05D003764 ORTHO05D004356 2.2e-148 529.6 435 60.7
Glyma.04G018600 Glycine max HOM05D003764 ORTHO05D004356 2.2e-148 529.6 351 68.9
TPR.G38113 Trifolium pratense HOM05D003764 ORTHO05D004356 2.2e-148 529.6 444 59.0
CiPaw.07G139600 Carya illinoinensis HOM05D003764 ORTHO05D004356 3.8e-148 528.9 442 59.0
Thecc.08G057700 Theobroma cacao HOM05D003764 ORTHO05D004356 3.8e-148 528.9 432 60.0
CANSAT25G3149 Cannabis sativa HOM05D003764 ORTHO05D004356 5.0e-148 528.5 347 70.9
CANSAT80G1902 Cannabis sativa HOM05D003764 ORTHO05D004356 6.5e-148 528.1 387 64.9
MSTRG.25298 Avicennia marina HOM05D003764 ORTHO05D004356 8.5e-148 527.7 347 70.9
vmacro21825 Vaccinium macrocarpon HOM05D003764 ORTHO05D004356 2.5e-147 526.2 436 59.6
TWI56G0154 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 3.2e-147 525.8 440 59.1
Glyma.06G018900 Glycine max HOM05D003764 ORTHO05D004356 1.2e-146 523.9 351 68.7
Migut.C00949 Erythranthe guttata HOM05D003764 ORTHO05D004356 1.6e-146 523.5 392 64.8
Ciclev10001182m.g Citrus clementina HOM05D003764 ORTHO05D004356 2.1e-146 523.1 432 60.0
Migut.C00953 Erythranthe guttata HOM05D003764 ORTHO05D004356 2.1e-146 523.1 390 65.6
Manes.18G006000 Manihot esculenta HOM05D003764 ORTHO05D004356 2.7e-146 522.7 439 58.5
Lj1g0016047 Lotus japonicus HOM05D003764 ORTHO05D004356 3.6e-146 522.3 352 68.2
TAR628G1614 Trochodendron aralioides HOM05D003764 ORTHO05D004356 3.6e-146 522.3 347 68.3
Potri.005G249600 Populus trichocarpa HOM05D003764 ORTHO05D004356 4.7e-146 521.9 436 58.9
Sabra02G0008800 Salix brachista HOM05D003764 ORTHO05D004356 5.2e-145 518.5 438 58.7
Potri.002G011400 Populus trichocarpa HOM05D003764 ORTHO05D004356 1.2e-144 517.3 456 57.2
Medtr3g115180 Medicago truncatula HOM05D003764 ORTHO05D004356 2.0e-144 516.5 430 58.4
Duzib116G0421 Durio zibethinus HOM05D003764 ORTHO05D004356 2.6e-144 516.2 432 58.8
SGA_v2.0_scaffold108G30854 Striga asiatica HOM05D003764 ORTHO05D004356 2.6e-144 516.2 391 63.2
AUR62043557 Chenopodium quinoa HOM05D003764 ORTHO05D004356 5.7e-144 515.0 359 66.0
Thhalv10018564m.g Eutrema salsugineum HOM05D003764 ORTHO05D004356 7.5e-144 514.6 350 68.9
arahy.Tifrunner.gnm1.ann1.CSAI9D Arachis hypogaea HOM05D003764 ORTHO05D004356 1.3e-143 513.8 350 67.4
MSTRG.1112 Avicennia marina HOM05D003764 ORTHO05D004356 1.3e-143 513.8 344 70.6
AUR62036887 Chenopodium quinoa HOM05D003764 ORTHO05D004356 1.7e-143 513.5 359 66.0
arahy.Tifrunner.gnm1.ann1.I18LAP Arachis hypogaea HOM05D003764 ORTHO05D004356 2.2e-143 513.1 350 67.4
Sp5g31390 Schrenkiella parvula HOM05D003764 ORTHO05D004356 2.8e-143 512.7 349 68.2
Ca_15440_v3 Cicer arietinum L. HOM05D003764 ORTHO05D004356 8.3e-143 511.1 428 58.4
SGA_v2.0_scaffold275G46585 Striga asiatica HOM05D003764 ORTHO05D004356 8.3e-143 511.1 367 66.2
PGR031G0670 Punica granatum HOM05D003764 ORTHO05D004356 1.4e-142 510.4 436 56.7
AT1G76250 Arabidopsis thaliana HOM05D003764 ORTHO05D004356 1.8e-142 510.0 350 67.7
BcaC08g47274 Brassica carinata HOM05D003764 ORTHO05D004356 4.1e-142 508.8 354 66.9
C06p50220 Brassica napus HOM05D003764 ORTHO05D004356 4.1e-142 508.8 354 66.9
BolC6t40061H Brassica oleracea HOM05D003764 ORTHO05D004356 4.1e-142 508.8 354 66.9
PSO210G7283 Papaver somniferum HOM05D003764 ORTHO05D004356 4.1e-142 508.8 436 58.3
SGA_v2.0_scaffold108G30849 Striga asiatica HOM05D003764 ORTHO05D004356 9.1e-142 507.7 343 67.6
Sabra05G0193100 Salix brachista HOM05D003764 ORTHO05D004356 1.2e-141 507.3 435 58.6
A07p41820 Brassica napus HOM05D003764 ORTHO05D004356 1.6e-141 506.9 354 66.7
Psat0s5633g0040 Pisum sativum HOM05D003764 ORTHO05D004356 1.6e-141 506.9 351 66.4
CARHR069810 Cardamine hirsuta HOM05D003764 ORTHO05D004356 4.5e-141 505.4 350 67.4
COL.COLO4_03998 Corchorus olitorius HOM05D003764 ORTHO05D004356 4.5e-141 505.4 432 57.9
Carub.0002s2314 Capsella rubella HOM05D003764 ORTHO05D004356 7.7e-141 504.6 349 67.3
BraA07t31712Z Brassica rapa HOM05D003764 ORTHO05D004356 1.0e-140 504.2 354 66.4
Ah.00g000380 Amaranthus hybridus HOM05D003764 ORTHO05D004356 1.3e-140 503.8 348 69.3
CSS0020809 Camellia sinensis var. sinensis HOM05D003764 ORTHO05D004356 1.3e-140 503.8 396 64.9
PSO170G5992 Papaver somniferum HOM05D003764 ORTHO05D004356 1.7e-140 503.4 350 66.6
Lj4A804T73 Lonicera japonica HOM05D003764 ORTHO05D004356 1.1e-139 500.7 345 68.1
A07p28580 Brassica napus HOM05D003764 ORTHO05D004356 1.9e-139 500.0 350 66.0
Gorai.009G188300 Gossypium raimondii HOM05D003764 ORTHO05D004356 3.3e-139 499.2 344 66.3
Eucgr.F01754 Eucalyptus grandis HOM05D003764 ORTHO05D004356 7.2e-139 498.0 347 64.3
BcaC08g47123 Brassica carinata HOM05D003764 ORTHO05D004356 9.5e-139 497.7 354 65.5
Lalb_Chr11g0061681 Lupinus albus HOM05D003764 ORTHO05D004356 2.8e-138 496.1 362 63.8
BraA07t30497Z Brassica rapa HOM05D003764 ORTHO05D004356 3.6e-138 495.7 347 66.0
Gohir.A05G180000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 6.1e-138 495.0 344 65.4
Gorai.002G118500 Gossypium raimondii HOM05D003764 ORTHO05D004356 1.0e-137 494.2 348 64.9
Aa31LG4G6340 Aethionema arabicum HOM05D003764 ORTHO05D004356 1.4e-137 493.8 350 63.4
BcaB02g07057 Brassica carinata HOM05D003764 ORTHO05D004356 1.4e-137 493.8 350 65.1
Peaxi162Scf00064g01016 Petunia axillaris HOM05D003764 ORTHO05D004356 1.4e-137 493.8 363 66.4
BcaC08g45536 Brassica carinata HOM05D003764 ORTHO05D004356 1.8e-137 493.4 350 65.1
C06p32120 Brassica napus HOM05D003764 ORTHO05D004356 1.8e-137 493.4 350 65.1
BolC6t38338H Brassica oleracea HOM05D003764 ORTHO05D004356 1.8e-137 493.4 350 65.1
SHI08003 Sapria himalayana HOM05D003764 ORTHO05D004356 5.2e-137 491.9 357 61.9
Gohir.D01G093100 Gossypium hirsutum HOM05D003764 ORTHO05D004356 6.8e-137 491.5 348 64.4
ClCG11G018640 Citrullus lanatus HOM05D003764 ORTHO05D004356 4.4e-136 488.8 392 59.7
HanXRQChr14g0428241 Helianthus annuus HOM05D003764 ORTHO05D004356 9.8e-136 487.6 347 63.4
Lsat_1_v5_gn_2_6240 Lactuca sativa HOM05D003764 ORTHO05D004356 2.2e-135 486.5 424 57.8
Hund01762 Selenicereus undatus HOM05D003764 ORTHO05D004356 6.3e-135 485.0 359 62.7
Gohir.D05G183000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 1.1e-134 484.2 344 64.8
Sc02g0009060 Simmondsia chinensis HOM05D003764 ORTHO05D004356 2.4e-134 483.0 347 63.7
Duzib093G1245 Durio zibethinus HOM05D003764 ORTHO05D004356 3.2e-134 482.6 346 63.3
MBI08_g19981_MAGBIO Magnolia biondii HOM05D003764 ORTHO05D004356 3.2e-134 482.6 347 62.8
Aqoxy6G01751 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 5.4e-134 481.9 380 58.9
SalBow7G4127 Salvia bowleyana HOM05D003764 ORTHO05D004356 5.4e-134 481.9 453 55.4
EL10Ac1g01980 Beta vulgaris HOM05D003764 ORTHO05D004356 9.2e-134 481.1 350 64.0
Gohir.A01G106600 Gossypium hirsutum HOM05D003764 ORTHO05D004356 2.0e-133 479.9 345 63.8
CsaV3_4G037170 Cucumis sativus L. HOM05D003764 ORTHO05D004356 1.0e-132 477.6 354 60.7
SGA_v2.0_scaffold275G46588 Striga asiatica HOM05D003764 ORTHO05D004356 2.3e-132 476.5 332 66.6
Eucgr.F03548 Eucalyptus grandis HOM05D003764 ORTHO05D004356 3.9e-132 475.7 366 60.4
Sed0020753 Sechium edule HOM05D003764 ORTHO05D004356 1.9e-131 473.4 357 61.1
Lalb_Chr23g0265831 Lupinus albus HOM05D003764 ORTHO05D004356 2.5e-131 473.0 355 63.4
MELO3C017015.2 Cucumis melo HOM05D003764 ORTHO05D004356 9.5e-131 471.1 377 57.8
unitig_747.g21519 Utricularia gibba HOM05D003764 ORTHO05D004356 3.1e-129 466.1 342 62.0
PSO170G6284 Papaver somniferum HOM05D003764 ORTHO05D004356 2.0e-128 463.4 426 55.9
HanXRQChr15g0491851 Helianthus annuus HOM05D003764 ORTHO05D004356 7.5e-128 461.5 353 60.6
PSO104G0104 Papaver somniferum HOM05D003764 ORTHO05D004356 3.2e-126 456.1 391 58.6
Sabra02G0008700 Salix brachista HOM05D003764 ORTHO05D004356 3.5e-125 452.6 400 57.2
CDE06G1096 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 6.0e-125 451.8 348 60.3
PSO170G2421 Papaver somniferum HOM05D003764 ORTHO05D004356 7.8e-125 451.4 396 57.1
PSO017G4841 Papaver somniferum HOM05D003764 ORTHO05D004356 2.3e-124 449.9 432 53.7
PSO170G4333 Papaver somniferum HOM05D003764 ORTHO05D004356 8.6e-124 448.0 430 53.5
PSO017G3905 Papaver somniferum HOM05D003764 ORTHO05D004356 1.1e-123 447.6 394 56.1
PSO170G1328 Papaver somniferum HOM05D003764 ORTHO05D004356 7.3e-123 444.9 363 60.3
Cfa014062 Carpinus fangiana HOM05D003764 ORTHO05D004356 2.8e-122 443.0 443 53.0
PSO017G1302 Papaver somniferum HOM05D003764 ORTHO05D004356 3.6e-122 442.6 389 58.4
PSO017G1698 Papaver somniferum HOM05D003764 ORTHO05D004356 6.8e-121 438.3 345 61.4
HPP92_026195 Vanilla planifolia HOM05D003764 ORTHO05D004356 6.8e-121 438.3 345 58.6
PSO017G3919 Papaver somniferum HOM05D003764 ORTHO05D004356 2.6e-120 436.4 394 56.9
PSO170G3515 Papaver somniferum HOM05D003764 ORTHO05D004356 5.8e-120 435.3 390 58.2
PSO017G1063 Papaver somniferum HOM05D003764 ORTHO05D004356 4.9e-119 432.2 392 56.6
ATR0106G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.1e-118 431.0 437 49.4
THA.LOC104813245 Tarenaya hassleriana HOM05D003764 ORTHO05D004356 2.1e-117 426.8 453 50.3
HPP92_022192 Vanilla planifolia HOM05D003764 ORTHO05D004356 9.5e-115 417.9 397 51.6
Cpa.g.sc26.208 Carica papaya HOM05D003764 ORTHO05D004356 1.2e-114 417.5 292 63.7
HPP92_022186 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.4e-113 414.1 397 51.6
HPP92_026182 Vanilla planifolia HOM05D003764 ORTHO05D004356 9.2e-110 401.4 291 62.9
MD15G1002800 Malus domestica HOM05D003764 ORTHO05D004356 2.3e-108 396.7 250 71.6
SEGI_06086 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 1.1e-107 394.4 343 54.5
DCAR_013910 Daucus carota HOM05D003764 ORTHO05D004356 1.1e-105 387.9 430 49.8
SEGI_23487 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 1.2e-104 384.4 343 53.1
unitig_747.g21882 Utricularia gibba HOM05D003764 ORTHO05D004356 6.6e-100 368.6 371 48.0
TWI12G0241 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 1.1e-99 367.9 250 64.8
unitig_699.g19216 Utricularia gibba HOM05D003764 ORTHO05D004356 1.1e-99 367.9 344 50.6
unitig_0.g1266 Utricularia gibba HOM05D003764 ORTHO05D004356 3.3e-99 366.3 343 50.1
CDE07G0072 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 1.6e-98 364.0 306 56.5
A09p51670 Brassica napus HOM05D003764 ORTHO05D004356 3.5e-93 346.3 243 65.4
Mapoly0006s0188 Marchantia polymorpha HOM05D003764 ORTHO05D004356 4.6e-93 345.9 341 49.0
Sabra02G0009000 Salix brachista HOM05D003764 ORTHO05D004356 1.7e-92 344.0 240 64.6
Pp3c14_15070 Physcomitrium patens HOM05D003764 ORTHO05D004356 4.3e-91 339.3 382 45.3
unitig_699.g19217 Utricularia gibba HOM05D003764 ORTHO05D004356 1.3e-90 337.8 344 47.7
AagrBONN_evm.TU.Sc2ySwM_228.3221 Anthoceros agrestis HOM05D003764 ORTHO05D004356 3.4e-88 329.7 352 45.7
HanXRQChr14g0428221 Helianthus annuus HOM05D003764 ORTHO05D004356 5.8e-88 328.9 237 61.2
Mapoly0049s0068 Marchantia polymorpha HOM05D003764 ORTHO05D004356 2.1e-85 320.5 338 47.0
ECA238G1445 Erigeron canadensis HOM05D003764 ORTHO05D004356 2.7e-85 320.1 237 59.9
Atru.chr13.152 Acer truncatum HOM05D003764 ORTHO05D004356 8.7e-84 315.1 287 56.8
SMO141G0079 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.1e-81 308.1 348 45.1
Zm00001eb209300 Zea mays HOM05D003764 ORTHO05D004356 2.2e-79 300.4 385 43.1
SMO364G0266 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.6e-77 294.3 346 40.8
AagrBONN_evm.TU.Sc2ySwM_368.3397 Anthoceros agrestis HOM05D003764 ORTHO05D004356 1.5e-75 287.7 299 46.5
Pp3c17_5840 Physcomitrium patens HOM05D003764 ORTHO05D004356 9.6e-75 285.0 391 39.6
Pp3c2_5370 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.4e-73 281.2 344 40.1
Pp3c17_7390 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.2e-72 278.1 342 41.8
SMO147G0236 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 4.5e-72 276.2 341 40.5
unitig_52.g17754 Utricularia gibba HOM05D003764 ORTHO05D004356 3.8e-71 273.1 240 50.4
Pp3c1_32600 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.9e-70 270.8 339 40.4
SMO367G1018 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 6.9e-65 252.3 351 37.3
CBR_g3019 Chara braunii HOM05D003764 ORTHO05D004356 2.8e-58 230.3 355 36.1
DCAR_010127 Daucus carota HOM05D003764 ORTHO05D004356 4.7e-37 159.8 154 53.9
Aqoxy6G01618 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 4.0e-36 156.8 147 55.1
CBR_g9154 Chara braunii HOM05D003764 ORTHO05D004356 1.3e-31 141.7 423 27.2
Cfa013034 Carpinus fangiana HOM05D003764 ORTHO05D004356 2.7e-24 117.5 85 57.6
ATR0756G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 5.2e-20 103.2 100 45.0
Os02g0119600 Oryza sativa ssp. japonica HOM05D003764 ORTHO05D004356 1.5e-19 101.7 79 50.6
SMO170G0013 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 5.4e-17 93.2 119 37.8
ATR0276G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.6e-13 81.6 86 40.7
Potri.012G136700 Populus trichocarpa HOM05D003764 ORTHO05D004356 4.7e-13 80.1 127 40.9
ATR0138G019 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.8e-12 78.2 131 38.2
ATR0555G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.4e-09 67.8 67 40.3
Nn1g01454 Nelumbo nucifera HOM05D003764 ORTHO05D004356 3.2e-09 67.4 41 73.2
Prupe.6G163800 Prunus persica HOM05D003764 ORTHO05D335910 3.0e-07 60.8 47 61.7


User provided reference genes

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