Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g082210.3 Solanum lycopersicum HOM05D003234 ORTHO05D003635 1.4e-46 189.5 109 100.0
Sopen04g035840 Solanum pennellii HOM05D003234 ORTHO05D003635 3.9e-46 188.0 109 99.1
PGSC0003DMG401009896 Solanum tuberosum HOM05D003234 ORTHO05D003635 1.1e-45 186.4 109 98.2
CAN.G311.99 Capsicum annuum HOM05D003234 ORTHO05D003635 5.9e-42 174.1 109 90.8
Nitab4.5_0000588g0270 Nicotiana tabacum HOM05D003234 ORTHO05D003635 5.2e-38 161.0 109 89.0
Solyc12g094510.2 Solanum lycopersicum HOM05D003234 ORTHO05D003635 2.4e-35 152.1 109 84.4
Sopen12g031400 Solanum pennellii HOM05D003234 ORTHO05D003635 2.4e-35 152.1 109 84.4
PGSC0003DMG400029411 Solanum tuberosum HOM05D003234 ORTHO05D003635 5.3e-35 151.0 109 83.5
Nitab4.5_0002710g0120 Nicotiana tabacum HOM05D003234 ORTHO05D003635 7.0e-35 150.6 109 80.7
Peaxi162Scf01481g00038 Petunia axillaris HOM05D003234 ORTHO05D003635 7.0e-35 150.6 109 81.7
CAN.G208.7 Capsicum annuum HOM05D003234 ORTHO05D003635 1.2e-34 149.8 109 82.6
Nitab4.5_0007869g0020 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.2e-34 149.8 109 82.6
Nitab4.5_0000699g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 1.6e-34 149.4 109 81.7
Actinidia37965 Actinidia chinensis HOM05D003234 ORTHO05D003635 2.0e-34 149.1 109 82.6
Dinv31919 Davidia involucrata HOM05D003234 ORTHO05D003635 2.7e-34 148.7 109 81.7
Nitab4.5_0000337g0170 Nicotiana tabacum HOM05D003234 ORTHO05D003635 2.7e-34 148.7 109 79.8
CARHR020910 Cardamine hirsuta HOM05D003234 ORTHO05D003635 3.5e-34 148.3 109 78.9
Gohir.A05G180900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.5e-34 148.3 109 81.7
Gohir.D05G183900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.5e-34 148.3 109 81.7
Gorai.009G189400 Gossypium raimondii HOM05D003234 ORTHO05D003635 3.5e-34 148.3 109 81.7
CANSAT25G0014 Cannabis sativa HOM05D003234 ORTHO05D003635 4.5e-34 147.9 109 80.7
Duzib093G1967 Durio zibethinus HOM05D003234 ORTHO05D003635 4.5e-34 147.9 109 80.7
TWI12G0861 Tripterygium wilfordii HOM05D003234 ORTHO05D003635 5.9e-34 147.5 109 80.7
Cpa.g.sc26.223 Carica papaya HOM05D003234 ORTHO05D003635 1.0e-33 146.7 109 80.7
Thhalv10019348m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 1.3e-33 146.4 109 82.6
GSVIVG01008697001 Vitis vinifera HOM05D003234 ORTHO05D003635 1.3e-33 146.4 109 80.7
Hma1.2p1_1260F.1_g271060 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 1.7e-33 146.0 108 81.5
Cc10_g00860 Coffea canephora HOM05D003234 ORTHO05D003635 2.2e-33 145.6 109 79.8
Peaxi162Scf00400g00314 Petunia axillaris HOM05D003234 ORTHO05D003635 2.2e-33 145.6 109 78.0
Manes.05G140300 Manihot esculenta HOM05D003234 ORTHO05D003635 2.9e-33 145.2 109 80.7
Sp5g31330 Schrenkiella parvula HOM05D003234 ORTHO05D003635 2.9e-33 145.2 109 81.7
Duzib116G0672 Durio zibethinus HOM05D003234 ORTHO05D003635 3.8e-33 144.8 109 79.8
FAN27G0038 Fragaria x ananassa HOM05D003234 ORTHO05D003635 3.8e-33 144.8 109 78.0
Sed0016414 Sechium edule HOM05D003234 ORTHO05D003635 3.8e-33 144.8 109 77.1
THA.LOC104813762 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 3.8e-33 144.8 109 81.7
BcaC08g47113 Brassica carinata HOM05D003234 ORTHO05D003635 5.0e-33 144.4 109 80.7
VMungo1309G2978 Vigna mungo HOM05D003234 ORTHO05D003635 5.0e-33 144.4 109 78.9
BcaB07g32048 Brassica carinata HOM05D003234 ORTHO05D003635 6.5e-33 144.1 109 79.8
BcaC05g25956 Brassica carinata HOM05D003234 ORTHO05D003635 6.5e-33 144.1 109 79.8
A06p16500 Brassica napus HOM05D003234 ORTHO05D003635 6.5e-33 144.1 109 79.8
C05p19050 Brassica napus HOM05D003234 ORTHO05D003635 6.5e-33 144.1 109 79.8
BraA06t24756Z Brassica rapa HOM05D003234 ORTHO05D003635 6.5e-33 144.1 109 79.8
CiPaw.07G140700 Carya illinoinensis HOM05D003234 ORTHO05D003635 6.5e-33 144.1 109 78.9
Medtr3g115080 Medicago truncatula HOM05D003234 ORTHO05D003635 6.5e-33 144.1 109 77.1
Prupe.1G356200 Prunus persica HOM05D003234 ORTHO05D003635 6.5e-33 144.1 109 78.0
Carub.0002s2308 Capsella rubella HOM05D003234 ORTHO05D003635 8.5e-33 143.7 109 78.9
FAN15G0717 Fragaria x ananassa HOM05D003234 ORTHO05D003635 8.5e-33 143.7 109 77.1
FAN20G3055 Fragaria x ananassa HOM05D003234 ORTHO05D003635 8.5e-33 143.7 109 77.1
RcHm_v2.0_Chr6g0304061 Rosa chinensis HOM05D003234 ORTHO05D003635 8.5e-33 143.7 109 77.1
TPR.G38123 Trifolium pratense HOM05D003234 ORTHO05D003635 8.5e-33 143.7 109 78.9
Aa31LG7G4760 Aethionema arabicum HOM05D003234 ORTHO05D003635 1.1e-32 143.3 109 80.7
AT1G76185 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 1.1e-32 143.3 109 78.9
arahy.Tifrunner.gnm1.ann1.G2HAI2 Arachis hypogaea HOM05D003234 ORTHO05D003635 1.1e-32 143.3 110 80.9
CiPaw.08G071600 Carya illinoinensis HOM05D003234 ORTHO05D003635 1.1e-32 143.3 109 78.0
AT1G20460 Arabidopsis thaliana HOM05D003234 ORTHO05D003635 1.5e-32 142.9 109 78.9
Thhalv10009165m.g Eutrema salsugineum HOM05D003234 ORTHO05D003635 1.5e-32 142.9 109 79.8
Manes.18G007200 Manihot esculenta HOM05D003234 ORTHO05D003635 1.5e-32 142.9 109 78.0
Phvul.009G021200 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 1.5e-32 142.9 109 78.9
Sp1g18170 Schrenkiella parvula HOM05D003234 ORTHO05D003635 1.5e-32 142.9 109 79.8
Carub.0001s1993 Capsella rubella HOM05D003234 ORTHO05D003635 1.9e-32 142.5 109 78.9
MELO3C026549.2 Cucumis melo HOM05D003234 ORTHO05D003635 1.9e-32 142.5 109 76.1
CsaV3_6G031700 Cucumis sativus L. HOM05D003234 ORTHO05D003635 1.9e-32 142.5 109 76.1
Duzib041G0372 Durio zibethinus HOM05D003234 ORTHO05D003635 1.9e-32 142.5 109 78.0
Glyma.04G019300 Glycine max HOM05D003234 ORTHO05D003635 1.9e-32 142.5 109 78.0
Gohir.A05G254800 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.9e-32 142.5 109 78.0
Lj1g0024220 Lotus japonicus HOM05D003234 ORTHO05D003635 1.9e-32 142.5 109 78.9
Potri.002G013000 Populus trichocarpa HOM05D003234 ORTHO05D003635 1.9e-32 142.5 109 76.1
Thecc.08G055600 Theobroma cacao HOM05D003234 ORTHO05D003635 1.9e-32 142.5 109 78.0
FvH4_2g37670 Fragaria vesca HOM05D003234 ORTHO05D003635 2.5e-32 142.1 109 76.1
Glyma.06G019600 Glycine max HOM05D003234 ORTHO05D003635 2.5e-32 142.1 109 78.0
MD08G1004300 Malus domestica HOM05D003234 ORTHO05D003635 2.5e-32 142.1 109 76.1
arahy.Tifrunner.gnm1.ann1.VFC9DI Arachis hypogaea HOM05D003234 ORTHO05D003635 3.2e-32 141.7 109 79.8
ClCG08G009600 Citrullus lanatus HOM05D003234 ORTHO05D003635 3.2e-32 141.7 109 76.1
MD15G1003700 Malus domestica HOM05D003234 ORTHO05D003635 3.2e-32 141.7 109 76.1
Potri.005G248300 Populus trichocarpa HOM05D003234 ORTHO05D003635 3.2e-32 141.7 109 76.1
BNapus_Darmor_BZH_scaffold_170p00030 Brassica napus HOM05D003234 ORTHO05D003635 4.2e-32 141.4 109 78.9
Ciclev10002915m.g Citrus clementina HOM05D003234 ORTHO05D003635 4.2e-32 141.4 109 77.1
Nn6g31830 Nelumbo nucifera HOM05D003234 ORTHO05D003635 5.5e-32 141.0 109 75.2
Psat0s3811g0040 Pisum sativum HOM05D003234 ORTHO05D003635 5.5e-32 141.0 109 78.0
BcaB02g07054 Brassica carinata HOM05D003234 ORTHO05D003635 7.2e-32 140.6 109 79.8
Gohir.A02G083600 Gossypium hirsutum HOM05D003234 ORTHO05D003635 7.2e-32 140.6 109 77.1
Gorai.009G267900 Gossypium raimondii HOM05D003234 ORTHO05D003635 7.2e-32 140.6 109 77.1
Gohir.D05G256400 Gossypium hirsutum HOM05D003234 ORTHO05D003635 9.4e-32 140.2 109 77.1
Gorai.005G112900 Gossypium raimondii HOM05D003234 ORTHO05D003635 9.4e-32 140.2 109 77.1
ClCG00G002880 Citrullus lanatus HOM05D003234 ORTHO05D003635 1.2e-31 139.8 108 75.0
Gohir.D02G099100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.2e-31 139.8 109 77.1
vmacro04393 Vaccinium macrocarpon HOM05D003234 ORTHO05D003635 1.2e-31 139.8 109 76.1
THA.LOC104809745 Tarenaya hassleriana HOM05D003234 ORTHO05D003635 1.6e-31 139.4 109 79.8
Sed0012631 Sechium edule HOM05D003234 ORTHO05D003635 2.7e-31 138.7 109 75.2
C02p33350 Brassica napus HOM05D003234 ORTHO05D003635 4.7e-31 137.9 109 75.2
Oeu011320.1 Olea europaea HOM05D003234 ORTHO05D003635 6.1e-31 137.5 109 77.1
BraA02t07080Z Brassica rapa HOM05D003234 ORTHO05D003635 8.0e-31 137.1 109 75.2
MSTRG.22360 Avicennia marina HOM05D003234 ORTHO05D003635 1.4e-30 136.3 109 76.1
A02p20490 Brassica napus HOM05D003234 ORTHO05D003635 1.4e-30 136.3 109 77.1
unitig_21.g20148 Utricularia gibba HOM05D003234 ORTHO05D003635 1.4e-30 136.3 109 74.3
Migut.C00924 Erythranthe guttata HOM05D003234 ORTHO05D003635 2.3e-30 135.6 109 73.4
Migut.N03196 Erythranthe guttata HOM05D003234 ORTHO05D003635 2.3e-30 135.6 109 75.2
PGR031G2527 Punica granatum HOM05D003234 ORTHO05D003635 3.0e-30 135.2 110 75.5
QL02p013773 Quercus lobata HOM05D003234 ORTHO05D003635 8.8e-30 133.7 130 63.8
unitig_744.g24608 Utricularia gibba HOM05D003234 ORTHO05D003635 8.8e-30 133.7 109 70.6
Rhsim06G0008900 Rhododendron simsii HOM05D003234 ORTHO05D003635 2.6e-29 132.1 109 74.3
SGA_v2.0_scaffold19G08601 Striga asiatica HOM05D003234 ORTHO05D003635 2.6e-29 132.1 109 75.2
Actinidia15481 Actinidia chinensis HOM05D003234 ORTHO05D003635 3.4e-29 131.7 109 74.3
EL10Ac1g02011 Beta vulgaris HOM05D003234 ORTHO05D003635 3.4e-29 131.7 109 70.6
BcaC03g15650 Brassica carinata HOM05D003234 ORTHO05D003635 3.4e-29 131.7 111 73.9
C06p32180 Brassica napus HOM05D003234 ORTHO05D003635 4.4e-29 131.3 109 76.1
Sc02g0009000 Simmondsia chinensis HOM05D003234 ORTHO05D003635 4.4e-29 131.3 109 70.6
SHI08007 Sapria himalayana HOM05D003234 ORTHO05D003635 7.5e-29 130.6 114 71.1
A07p28600 Brassica napus HOM05D003234 ORTHO05D003635 9.8e-29 130.2 109 75.2
HanXRQChr12g0366591 Helianthus annuus HOM05D003234 ORTHO05D003635 2.8e-28 128.6 108 70.4
Hund05127 Selenicereus undatus HOM05D003234 ORTHO05D003635 2.8e-28 128.6 109 71.6
BraA07t30501Z Brassica rapa HOM05D003234 ORTHO05D003635 3.7e-28 128.3 109 77.1
Lsat_1_v5_gn_8_27741 Lactuca sativa HOM05D003234 ORTHO05D003635 3.7e-28 128.3 107 69.2
Eucgr.F03542 Eucalyptus grandis HOM05D003234 ORTHO05D003635 4.8e-28 127.9 109 70.6
Lalb_Chr19g0131711 Lupinus albus HOM05D003234 ORTHO05D003635 6.3e-28 127.5 110 70.9
SalBow6G3231 Salvia bowleyana HOM05D003234 ORTHO05D003635 8.3e-28 127.1 109 71.6
MSTRG.1123 Avicennia marina HOM05D003234 ORTHO05D003635 1.8e-27 125.9 109 67.0
Aqoxy5G01058 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 1.6e-26 122.9 110 69.1
Lsat_1_v5_gn_5_39760 Lactuca sativa HOM05D003234 ORTHO05D003635 1.6e-26 122.9 108 70.4
SGA_v2.0_scaffold275G46578 Striga asiatica HOM05D003234 ORTHO05D003635 4.5e-26 121.3 109 69.7
Lalb_Chr01g0008381 Lupinus albus HOM05D003234 ORTHO05D003635 7.7e-26 120.6 109 72.5
MBI05_g27809_MAGBIO Magnolia biondii HOM05D003234 ORTHO05D003635 7.7e-26 120.6 108 72.2
Lalb_Chr11g0061721 Lupinus albus HOM05D003234 ORTHO05D003635 3.8e-25 118.2 114 64.0
MSTRG.25294 Avicennia marina HOM05D003234 ORTHO05D003635 5.0e-25 117.9 109 66.1
Lalb_Chr08g0246351 Lupinus albus HOM05D003234 ORTHO05D003635 5.0e-25 117.9 126 60.3
vmacro21831 Vaccinium macrocarpon HOM05D003234 ORTHO05D003635 1.9e-24 115.9 147 56.5
CDE02G2075 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 3.3e-24 115.2 109 63.3
HanXRQChr14g0428701 Helianthus annuus HOM05D003234 ORTHO05D003635 1.8e-22 109.4 109 60.6
CSS0034652 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 3.0e-22 108.6 109 66.1
Sabra05G0191800 Salix brachista HOM05D003234 ORTHO05D003635 5.2e-22 107.8 200 42.0
ECA233G0660 Erigeron canadensis HOM05D003234 ORTHO05D003635 7.5e-21 104.0 89 67.4
BolC5t30606H Brassica oleracea HOM05D003234 ORTHO05D003635 1.3e-20 103.2 77 80.5
TAR628G0584 Trochodendron aralioides HOM05D003234 ORTHO05D003635 2.2e-20 102.4 98 65.3
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 1.7e-17 92.8 86 61.6
SEGI_11040 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 2.3e-17 92.4 109 50.5
Peaxi162Scf00064g01012 Petunia axillaris HOM05D003234 ORTHO05D003635 1.9e-16 89.4 82 69.5
PSO170G0681 Papaver somniferum HOM05D003234 ORTHO05D003635 3.3e-16 88.6 76 72.4
CDE09G0257 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 7.3e-16 87.4 109 54.1
PSO210G7820 Papaver somniferum HOM05D003234 ORTHO05D003635 9.5e-16 87.0 69 72.5
ATR0733G120 Amborella trichopoda HOM05D003234 ORTHO05D003635 1.2e-15 86.7 109 49.5
Sabra02G0010200 Salix brachista HOM05D003234 ORTHO05D003635 5.8e-13 77.8 70 68.6
Aqoxy5G01648 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 2.2e-12 75.9 108 47.2
BraA07t31705Z Brassica rapa HOM05D003234 ORTHO05D003635 8.3e-12 73.9 66 72.7
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 3.2e-11 72.0 108 44.4
COL.COLO4_21608 Corchorus olitorius HOM05D003234 ORTHO05D003635 5.4e-11 71.2 37 91.9
Aqoxy6G01093 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 7.0e-11 70.9 110 41.8
CSS0031108 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 7.0e-11 70.9 109 47.7
TAR376G0434 Trochodendron aralioides HOM05D003234 ORTHO05D003635 7.0e-11 70.9 57 77.2
GSVIVG01018978001 Vitis vinifera HOM05D003234 ORTHO05D003635 9.2e-11 70.5 109 46.8
Manes.01G134700 Manihot esculenta HOM05D003234 ORTHO05D003635 1.6e-10 69.7 109 45.0
Rhsim07G0254000 Rhododendron simsii HOM05D003234 ORTHO05D003635 1.6e-10 69.7 37 91.9
CANSAT01G1184 Cannabis sativa HOM05D003234 ORTHO05D003635 2.0e-10 69.3 109 44.0
MSTRG.23532 Avicennia marina HOM05D003234 ORTHO05D003635 2.7e-10 68.9 109 43.1
BcaC08g45540 Brassica carinata HOM05D003234 ORTHO05D003635 3.5e-10 68.6 50 74.0
BolC6t38341H Brassica oleracea HOM05D003234 ORTHO05D003635 3.5e-10 68.6 50 74.0
Actinidia36555 Actinidia chinensis HOM05D003234 ORTHO05D003635 6.0e-10 67.8 109 45.9
Lsat_1_v5_gn_3_77600 Lactuca sativa HOM05D003234 ORTHO05D003635 1.7e-09 66.2 108 43.5
SEGI_02230 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 5.0e-09 64.7 73 50.7
Actinidia12120 Actinidia chinensis HOM05D003234 ORTHO05D003635 8.6e-09 63.9 109 44.0
Ah.00g000460 Amaranthus hybridus HOM05D003234 ORTHO05D003635 1.5e-08 63.2 36 86.1
ECA246G3301 Erigeron canadensis HOM05D003234 ORTHO05D003635 3.3e-08 62.0 110 42.7
HanXRQChr15g0482261 Helianthus annuus HOM05D003234 ORTHO05D003635 5.6e-08 61.2 109 39.4
Lalb_Chr09g0322471 Lupinus albus HOM05D003234 ORTHO05D003635 9.5e-08 60.5 109 42.2
Nn1g05018 Nelumbo nucifera HOM05D003234 ORTHO05D003635 9.5e-08 60.5 110 40.9
Gorai.011G102100 Gossypium raimondii HOM05D003234 ORTHO05D003635 1.2e-07 60.1 109 41.3
Hma1.2p1_0717F.1_g208130 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 1.2e-07 60.1 108 39.8
Migut.H00998 Erythranthe guttata HOM05D003234 ORTHO05D003635 1.6e-07 59.7 109 39.4
AagrBONN_evm.TU.Sc2ySwM_344.3603 Anthoceros agrestis HOM05D003234 ORTHO05D003635 2.1e-07 59.3 103 39.8
arahy.Tifrunner.gnm1.ann1.F5AS58 Arachis hypogaea HOM05D003234 ORTHO05D003635 2.1e-07 59.3 109 43.1
arahy.Tifrunner.gnm1.ann1.WI3JHU Arachis hypogaea HOM05D003234 ORTHO05D003635 2.1e-07 59.3 109 43.1
Dinv39975 Davidia involucrata HOM05D003234 ORTHO05D003635 2.1e-07 59.3 108 40.7
Gohir.D10G092900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.1e-07 59.3 109 41.3
Thecc.01G037000 Theobroma cacao HOM05D003234 ORTHO05D003635 2.1e-07 59.3 109 39.4
Ciclev10026821m.g Citrus clementina HOM05D003234 ORTHO05D003635 3.6e-07 58.5 109 41.3
Sopen02g030060 Solanum pennellii HOM05D003234 ORTHO05D003635 3.6e-07 58.5 109 43.1
TPR.G34985 Trifolium pratense HOM05D003234 ORTHO05D003635 3.6e-07 58.5 109 42.2
CiPaw.02G016600 Carya illinoinensis HOM05D003234 ORTHO05D003635 4.7e-07 58.2 109 40.4
CAN.G358.101 Capsicum annuum HOM05D003234 ORTHO05D003635 8.0e-07 57.4 109 42.2
Cc07_g09430 Coffea canephora HOM05D003234 ORTHO05D003635 8.0e-07 57.4 109 43.1
CDE04G0975 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 1.1e-06 57.0 66 50.0
TAR625G0832 Trochodendron aralioides HOM05D003234 ORTHO05D003635 1.1e-06 57.0 76 53.9
Gohir.A10G095000 Gossypium hirsutum HOM05D003234 ORTHO05D003635 2.3e-06 55.8 109 39.4
Os03g0669600 Oryza sativa ssp. japonica HOM05D003234 ORTHO05D003635 4.0e-06 55.1 109 38.5
Zm00001eb009770 Zea mays HOM05D003234 ORTHO05D003635 6.8e-06 54.3 110 40.0
Dinv39576 Davidia involucrata HOM05D003234 ORTHO05D003635 8.9e-06 53.9 38 76.3


User provided reference genes

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