Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 2.9e-186 655.2 360 100.0
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 1.3e-181 639.8 360 98.1
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 2.2e-170 602.4 360 92.5
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 2.6e-147 525.8 360 83.1
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 5.9e-115 418.3 354 65.0
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 4.9e-101 372.1 343 62.4
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 2.6e-78 296.6 360 49.2
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 3.4e-70 269.6 259 63.7
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 6.6e-66 255.4 328 47.6
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 1.9e-65 253.8 363 43.5
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 2.8e-64 250.0 365 44.1
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 2.8e-64 250.0 373 43.2
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 4.8e-64 249.2 355 44.8
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 1.4e-63 247.7 388 42.5
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.1e-63 246.5 373 41.0
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 4.0e-63 246.1 371 40.4
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 9.0e-63 245.0 373 40.8
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 9.0e-63 245.0 374 42.8
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.0e-62 243.8 373 41.0
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 4.5e-62 242.7 355 44.2
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 7.6e-62 241.9 360 44.4
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 3.8e-61 239.6 354 43.5
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.1e-60 238.0 356 43.3
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.4e-60 237.7 362 42.5
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 1.6e-59 234.2 356 43.5
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 2.7e-59 233.4 358 42.7
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 4.6e-59 232.6 377 39.8
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 7.9e-59 231.9 386 39.6
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 1.3e-58 231.1 388 39.7
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.1e-57 228.0 365 43.3
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 7.4e-57 225.3 379 39.6
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 1.3e-56 224.6 376 40.7
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.6e-56 224.2 379 39.8
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 2.8e-56 223.4 371 39.4
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 3.7e-56 223.0 351 41.6
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 6.2e-56 222.2 364 41.5
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 6.2e-56 222.2 373 38.1
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 6.2e-56 222.2 320 41.2
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.8e-55 220.7 340 40.9
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 2.4e-55 220.3 360 42.8
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 4.0e-55 219.5 375 38.7
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 6.9e-55 218.8 320 41.2
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 5.8e-54 215.7 353 41.6
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 5.8e-54 215.7 374 38.5
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 1.7e-53 214.2 325 45.8
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.7e-53 214.2 358 38.5
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 2.9e-53 213.4 364 39.8
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 2.9e-53 213.4 352 37.5
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 4.9e-53 212.6 381 39.1
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 1.1e-52 211.5 324 42.9
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 7.1e-52 208.8 359 39.8
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 1.6e-51 207.6 393 39.4
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 1.6e-51 207.6 369 39.3
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 3.5e-51 206.5 322 42.9
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 3.5e-51 206.5 370 39.7
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 6.0e-51 205.7 351 38.5
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 1.8e-50 204.1 392 36.7
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 6.7e-50 202.2 364 39.3
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 8.7e-50 201.8 387 41.6
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 2.8e-48 196.8 357 37.5
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 4.8e-48 196.1 378 34.7
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 4.8e-48 196.1 326 39.3
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 4.8e-48 196.1 363 40.2
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 8.2e-48 195.3 351 40.7
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 2.4e-47 193.7 378 34.4
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 2.4e-47 193.7 380 34.7
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 5.3e-47 192.6 385 39.0
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 6.9e-47 192.2 352 37.8
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 9.0e-47 191.8 428 34.6
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.2e-46 191.4 380 35.0
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 3.4e-46 189.9 363 36.1
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 4.5e-46 189.5 250 42.8
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 5.9e-46 189.1 350 37.4
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 5.9e-46 189.1 388 39.2
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 2.2e-45 187.2 383 38.6
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 5.0e-45 186.0 387 38.5
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 8.4e-45 185.3 400 35.0
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 1.1e-44 184.9 378 32.8
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 1.4e-44 184.5 353 37.1
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 1.9e-44 184.1 352 37.2
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 3.2e-44 183.3 382 38.0
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 4.2e-44 183.0 352 36.9
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 4.2e-44 183.0 351 39.9
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 7.2e-44 182.2 381 39.4
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 2.7e-43 180.3 373 34.6
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 4.6e-43 179.5 354 36.2
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 6.1e-43 179.1 379 35.6
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 6.7e-42 175.6 300 36.7
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 1.5e-41 174.5 350 35.4
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 5.7e-41 172.6 358 35.8
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 5.7e-41 172.6 383 36.0
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 9.7e-41 171.8 348 35.1
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 1.3e-40 171.4 354 35.6
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 1.6e-40 171.0 381 35.7
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 2.4e-39 167.2 327 35.8
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 3.1e-39 166.8 349 34.7
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 5.3e-39 166.0 373 33.5
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 1.2e-38 164.9 379 33.8
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 2.6e-38 163.7 373 34.0
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 5.9e-38 162.5 355 33.2
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 7.7e-38 162.2 212 43.9
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 7.7e-38 162.2 354 32.8
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 8.5e-37 158.7 375 30.4
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 2.5e-36 157.1 349 33.0
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.2e-35 154.8 283 39.2
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 4.6e-35 152.9 320 35.9
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 4.6e-35 152.9 314 35.4
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 1.4e-34 151.4 347 31.4
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 2.3e-34 150.6 387 35.1
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 2.0e-33 147.5 328 33.8
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 4.3e-33 146.4 359 30.6
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 4.3e-33 146.4 309 31.4
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 7.4e-33 145.6 357 33.9
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 7.4e-33 145.6 359 34.5
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 2.2e-32 144.1 357 33.9
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 2.2e-32 144.1 304 33.9
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 1.4e-31 141.4 351 35.6
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 1.4e-31 141.4 410 29.8
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 9.1e-31 138.7 368 31.2
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.5e-30 137.9 348 31.9
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 1.7e-29 134.4 218 35.8
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 1.1e-28 131.7 378 36.8
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 2.6e-25 120.6 362 29.3
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 1.7e-24 117.9 197 42.1
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 3.5e-22 110.2 231 30.3
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 7.7e-22 109.0 194 37.6
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 3.8e-21 106.7 117 46.2
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 1.2e-19 101.7 244 28.7
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 5.2e-18 96.3 354 28.5
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 1.5e-17 94.7 392 25.8
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 1.5e-17 94.7 231 32.5
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 2.0e-17 94.4 197 31.5
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 2.2e-16 90.9 177 40.1
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 1.8e-15 87.8 376 27.4
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 1.5e-12 78.2 215 27.9
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 9.4e-12 75.5 105 32.4
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 3.6e-11 73.6 241 22.8
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 4.5e-06 56.6 144 29.9
Aqoxy2G01737 Aquilegia oxysepala HOM05D017957 ORTHO05D005897 7.7e-06 55.8 233 21.9


User provided reference genes

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