Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 9.9e-155 550.1 273 100.0
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 9.9e-155 550.1 273 100.0
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 7.1e-153 543.9 273 98.9
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 8.7e-151 537.0 273 97.4
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 1.6e-149 532.7 273 95.6
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 9.6e-134 480.3 272 84.2
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 1.6e-133 479.6 272 82.7
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 1.1e-132 476.9 272 83.8
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 1.1e-132 476.9 270 83.7
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 5.3e-132 474.6 270 82.6
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 5.3e-132 474.6 270 83.7
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 2.0e-131 472.6 271 84.5
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 2.0e-131 472.6 271 84.5
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 2.6e-131 472.2 272 83.1
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 2.6e-131 472.2 270 83.7
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 2.6e-131 472.2 270 83.3
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 3.4e-131 471.9 270 83.3
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 3.4e-131 471.9 270 83.0
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 3.4e-131 471.9 272 83.8
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.5e-131 471.5 270 83.3
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 1.0e-130 470.3 272 83.1
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 1.3e-130 469.9 272 82.4
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 1.3e-130 469.9 272 82.4
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 1.7e-130 469.5 271 83.8
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 1.7e-130 469.5 272 83.8
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 2.2e-130 469.2 271 84.5
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 2.2e-130 469.2 269 82.9
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 2.9e-130 468.8 271 83.8
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 2.9e-130 468.8 271 84.5
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 2.9e-130 468.8 272 83.1
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 3.8e-130 468.4 271 84.1
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 4.9e-130 468.0 271 83.0
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 4.9e-130 468.0 272 82.4
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.9e-130 468.0 270 83.0
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 4.9e-130 468.0 272 81.2
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 8.4e-130 467.2 272 81.6
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 8.4e-130 467.2 270 81.9
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 1.4e-129 466.5 271 83.4
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 1.4e-129 466.5 271 83.4
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 1.4e-129 466.5 272 81.2
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 1.9e-129 466.1 272 82.4
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 2.5e-129 465.7 270 80.4
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 2.5e-129 465.7 271 83.0
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 4.2e-129 464.9 270 81.1
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 4.2e-129 464.9 272 81.2
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 4.2e-129 464.9 272 82.0
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 5.5e-129 464.5 272 83.5
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 9.3e-129 463.8 270 80.7
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 9.3e-129 463.8 272 80.9
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 1.2e-128 463.4 270 80.7
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 1.6e-128 463.0 270 81.9
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 2.1e-128 462.6 271 83.0
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 2.1e-128 462.6 270 81.5
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 2.7e-128 462.2 270 80.7
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 6.0e-128 461.1 271 83.0
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 6.0e-128 461.1 272 81.2
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 6.0e-128 461.1 270 80.4
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 7.9e-128 460.7 270 81.5
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 1.8e-127 459.5 270 79.3
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 1.8e-127 459.5 270 81.9
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 2.3e-127 459.1 270 81.1
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 3.0e-127 458.8 272 80.9
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 3.0e-127 458.8 270 77.8
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.9e-127 458.4 272 82.0
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 3.9e-127 458.4 272 82.0
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 3.9e-127 458.4 270 80.7
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 8.7e-127 457.2 270 80.0
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 1.5e-126 456.4 270 80.7
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 1.5e-126 456.4 270 78.5
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 1.9e-126 456.1 270 80.4
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 2.5e-126 455.7 270 80.7
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 4.3e-126 454.9 270 78.9
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 1.6e-125 453.0 262 81.7
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 6.3e-125 451.1 270 80.7
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 8.2e-125 450.7 270 79.3
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 1.8e-124 449.5 270 79.6
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 2.4e-124 449.1 270 77.4
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 3.1e-124 448.7 273 82.4
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 9.0e-124 447.2 272 77.2
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 5.9e-123 444.5 272 77.6
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 1.7e-122 443.0 302 72.5
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 2.2e-122 442.6 257 82.1
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 2.9e-122 442.2 270 77.4
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 2.9e-122 442.2 270 77.0
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 3.8e-122 441.8 272 77.2
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 8.5e-122 440.7 270 77.4
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.1e-121 440.3 270 77.4
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 2.7e-120 435.6 304 72.0
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 5.1e-119 431.4 270 76.7
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 3.3e-118 428.7 272 75.0
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 5.7e-118 427.9 263 76.4
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 6.3e-117 424.5 300 69.0
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 1.2e-115 420.2 270 73.0
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 2.6e-115 419.1 270 75.2
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 1.3e-114 416.8 270 75.2
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 2.9e-114 415.6 270 70.0
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 6.5e-114 414.5 270 70.0
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 1.9e-113 412.9 270 71.1
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 5.5e-113 411.4 282 70.6
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 1.6e-112 409.8 381 57.2
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 2.7e-112 409.1 270 69.3
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 3.7e-109 398.7 240 77.5
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 9.1e-108 394.0 240 79.2
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 9.1e-108 394.0 243 77.8
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 8.5e-106 387.5 222 83.8
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 2.5e-105 386.0 222 82.9
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 3.2e-105 385.6 271 65.7
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 2.3e-103 379.4 270 70.7
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 6.7e-103 377.9 270 67.4
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.8e-100 369.8 251 74.5
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 2.3e-95 352.8 270 61.5
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 1.5e-94 350.1 220 77.3
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 2.6e-94 349.4 197 83.8
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 2.2e-93 346.3 270 60.4
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 2.7e-91 339.3 271 63.8
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 5.9e-91 338.2 271 64.6
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 5.9e-91 338.2 290 57.9
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 2.2e-90 336.3 271 64.2
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 2.4e-84 316.2 180 80.0
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 5.4e-84 315.1 271 61.3
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 1.3e-77 293.9 271 57.6
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 1.3e-77 293.9 276 51.4
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 2.8e-77 292.7 240 63.3
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.9e-74 282.7 168 81.5
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 4.9e-69 265.4 152 84.9
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 6.4e-69 265.0 152 80.3
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 1.1e-65 254.2 165 75.2
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 7.5e-62 241.5 208 59.6
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 2.3e-55 219.9 153 71.9
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 1.5e-54 217.2 271 48.3
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.1e-49 201.1 272 46.7
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 1.8e-47 193.7 270 44.1
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.1e-43 180.3 140 65.7
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 3.4e-38 162.9 148 60.8
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 2.3e-34 150.2 261 42.1
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 8.7e-34 148.3 89 77.5
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 4.3e-33 146.0 269 39.4
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 6.2e-32 142.1 185 46.5
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 2.9e-29 133.3 130 56.2
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 3.8e-29 132.9 92 71.7
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 3.2e-28 129.8 135 51.1
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 3.2e-28 129.8 79 73.4
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 2.7e-27 126.7 135 50.4
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 9.0e-23 111.7 119 52.1
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.6e-19 100.9 73 65.8
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 2.2e-13 80.5 89 50.6
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 2.5e-12 77.0 45 75.6
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 3.9e-10 69.7 49 67.3
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 1.8e-07 60.8 49 67.3


User provided reference genes

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