Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 1.1e-260 902.9 518 100.0
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 7.9e-246 853.6 518 96.1
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 7.2e-239 830.5 566 87.1
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 1.2e-204 716.8 518 80.7
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.0e-200 703.7 517 79.1
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 9.6e-183 644.0 521 77.7
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 5.7e-143 511.9 340 80.3
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 1.4e-130 470.7 556 57.6
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 8.8e-128 461.5 562 55.5
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 5.7e-127 458.8 455 59.8
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 7.0e-125 451.8 452 58.0
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 8.5e-123 444.9 549 54.6
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 1.2e-121 441.0 567 50.4
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 1.6e-121 440.7 566 48.9
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 2.1e-121 440.3 564 51.8
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 3.7e-118 429.5 566 50.9
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 6.3e-118 428.7 474 55.3
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 7.7e-116 421.8 540 50.4
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 2.9e-115 419.9 502 51.8
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 8.5e-115 418.3 543 50.1
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 1.1e-114 417.9 478 52.5
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 7.2e-114 415.2 479 53.4
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 9.4e-114 414.8 463 53.8
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.2e-113 414.5 503 52.3
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 3.6e-113 412.9 497 53.9
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 8.0e-113 411.8 489 52.6
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 1.4e-112 411.0 536 51.3
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 8.8e-112 408.3 557 53.1
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.2e-111 407.9 475 52.4
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.5e-111 407.5 464 54.7
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 5.7e-111 405.6 611 48.0
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 9.8e-111 404.8 559 57.1
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.3e-110 404.4 489 52.8
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 1.3e-110 404.4 571 48.2
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 8.3e-110 401.7 461 51.6
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 8.3e-110 401.7 483 51.8
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 9.1e-109 398.3 568 48.1
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 1.0e-107 394.8 479 53.0
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.3e-107 394.4 481 54.9
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 1.7e-107 394.0 562 47.0
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 5.0e-107 392.5 564 50.9
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 7.2e-106 388.7 577 45.6
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.6e-105 386.3 497 50.5
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 4.7e-105 386.0 561 48.1
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 2.3e-104 383.6 494 50.0
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 4.0e-104 382.9 528 49.2
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 4.0e-104 382.9 460 54.1
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 6.8e-104 382.1 489 50.5
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 1.5e-103 380.9 530 48.1
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 5.7e-103 379.0 534 48.7
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 9.8e-103 378.3 555 46.3
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 1.3e-102 377.9 488 49.8
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 1.3e-102 377.9 498 52.4
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.7e-102 377.5 530 52.5
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 1.7e-102 377.5 555 46.3
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.7e-102 377.5 476 50.6
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 8.3e-102 375.2 555 46.3
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.8e-101 374.0 530 52.5
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.4e-101 373.6 529 53.7
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 4.1e-101 372.9 436 50.9
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 2.0e-100 370.5 413 54.5
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 4.5e-100 369.4 479 50.1
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 4.5e-100 369.4 549 46.8
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 5.9e-100 369.0 452 51.1
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 1.7e-99 367.5 447 51.2
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 2.9e-99 366.7 471 50.5
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 5.0e-99 365.9 572 45.3
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 2.5e-98 363.6 490 48.8
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 2.5e-98 363.6 553 48.6
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 5.6e-98 362.5 568 46.3
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 7.3e-98 362.1 478 48.1
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 7.3e-98 362.1 474 50.0
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 1.2e-97 361.3 470 49.1
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.6e-97 360.9 543 49.9
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.6e-97 360.9 468 49.1
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 2.1e-97 360.5 473 49.5
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.8e-97 360.1 478 49.0
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 1.4e-96 357.8 455 51.4
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 1.8e-96 357.5 563 45.6
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 5.7e-95 352.4 528 52.3
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 1.7e-94 350.9 469 49.9
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 2.2e-94 350.5 448 49.3
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 8.3e-94 348.6 465 47.5
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 2.0e-92 344.0 448 48.7
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 3.5e-92 343.2 481 49.5
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 5.9e-92 342.4 468 48.5
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 1.0e-91 341.7 469 48.4
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 3.0e-91 340.1 474 47.7
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.0e-91 340.1 470 47.0
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.0e-91 340.1 469 47.3
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 6.6e-91 339.0 465 47.1
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 7.3e-90 335.5 493 46.5
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 2.1e-89 334.0 453 47.2
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.1e-88 330.1 470 47.0
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 1.2e-87 328.2 461 45.6
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 2.0e-87 327.4 471 46.3
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 1.4e-85 321.2 443 49.2
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 5.4e-85 319.3 453 46.1
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 3.5e-84 316.6 461 46.4
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 3.0e-83 313.5 487 43.7
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 5.0e-83 312.8 443 46.7
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 1.1e-82 311.6 448 45.5
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 1.9e-82 310.8 469 45.2
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 3.3e-82 310.1 442 46.6
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 4.3e-82 309.7 445 46.3
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 6.2e-81 305.8 557 43.8
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 8.1e-81 305.4 453 46.1
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 8.1e-81 305.4 455 45.5
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 8.1e-81 305.4 455 45.5
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 1.3e-78 298.1 657 36.1
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 3.5e-76 290.0 472 44.9
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 3.3e-74 283.5 298 56.4
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 2.4e-72 277.3 174 83.3
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 1.4e-69 268.1 306 53.6
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 2.6e-63 247.3 468 41.5
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 4.4e-63 246.5 313 49.5
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 7.1e-61 239.2 466 38.8
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 2.7e-60 237.3 463 40.2
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 2.7e-60 237.3 463 40.2
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 4.6e-60 236.5 513 37.0
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 1.6e-44 184.9 317 40.7
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.5e-42 177.6 162 60.5
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 5.6e-42 176.4 524 32.8
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 6.2e-41 172.9 281 44.1
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.4e-40 171.8 318 39.9
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 2.9e-38 164.1 296 39.5
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 2.5e-37 161.0 543 32.0
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 3.5e-36 157.1 403 32.8
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.1e-29 135.6 352 34.1
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 2.1e-28 131.3 649 27.9
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 3.6e-28 130.6 187 49.2
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 5.1e-27 126.7 188 47.3
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.5e-26 125.2 441 31.5
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.0e-22 112.5 88 65.9
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.4e-19 102.1 130 50.8
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 3.0e-19 100.9 233 38.2
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 4.4e-18 97.1 108 52.8
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 1.3e-17 95.5 463 27.9
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.7e-17 95.1 124 46.8
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.7e-17 95.1 101 49.5
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.8e-17 94.4 142 40.1
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.1e-16 92.4 136 40.4
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 7.7e-15 86.3 445 30.1
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 9.4e-13 79.3 357 28.9
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.3e-11 74.7 185 37.8
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 6.7e-11 73.2 92 45.7
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 2.8e-09 67.8 111 36.0
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.6e-07 61.2 227 30.4
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 4.5e-07 60.5 75 44.0


User provided reference genes

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