Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g080950.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 1.4e-126 456.4 262 100.0
Sopen04g034560 Solanum pennellii HOM05D005370 ORTHO05D006659 7.6e-120 434.1 254 98.0
PGSC0003DMG400003760 Solanum tuberosum HOM05D005370 ORTHO05D006659 3.8e-103 378.6 247 90.7
CAN.G851.23 Capsicum annuum HOM05D005370 ORTHO05D006659 2.2e-95 352.8 254 82.3
Peaxi162Scf00434g00622 Petunia axillaris HOM05D005370 ORTHO05D006659 5.5e-86 321.6 254 72.8
Migut.D00369 Erythranthe guttata HOM05D005370 ORTHO05D006659 1.9e-70 270.0 258 61.2
CSS0021022 Camellia sinensis var. sinensis HOM05D005370 ORTHO05D006659 9.4e-70 267.7 255 60.4
Cc01_g08030 Coffea canephora HOM05D005370 ORTHO05D006659 9.4e-70 267.7 256 61.3
Sabra02G0036500 Salix brachista HOM05D005370 ORTHO05D006659 8.8e-68 261.2 259 57.9
Nitab4.5_0001423g0070 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.5e-67 260.4 282 61.3
SGA_v2.0_scaffold3169G54286 Striga asiatica HOM05D005370 ORTHO05D006659 1.5e-67 260.4 257 59.1
AUR62032263 Chenopodium quinoa HOM05D005370 ORTHO05D006659 4.4e-67 258.8 259 59.8
SGA_v2.0_scaffold580G53040 Striga asiatica HOM05D005370 ORTHO05D006659 5.7e-67 258.5 253 58.1
TWI18G0973 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 2.2e-66 256.5 256 59.8
Potri.002G045500 Populus trichocarpa HOM05D005370 ORTHO05D006659 1.4e-65 253.8 262 57.3
SalBow4G0733 Salvia bowleyana HOM05D005370 ORTHO05D006659 2.4e-65 253.1 260 56.2
HanXRQChr02g0032381 Helianthus annuus HOM05D005370 ORTHO05D006659 3.1e-65 252.7 253 61.3
Lsat_1_v5_gn_8_94841 Lactuca sativa HOM05D005370 ORTHO05D006659 4.1e-65 252.3 253 58.9
AUR62011949 Chenopodium quinoa HOM05D005370 ORTHO05D006659 5.3e-65 251.9 260 58.1
ECA236G0510 Erigeron canadensis HOM05D005370 ORTHO05D006659 5.3e-65 251.9 258 57.8
EL10Ac5g10469 Beta vulgaris HOM05D005370 ORTHO05D006659 9.1e-65 251.1 256 60.5
CiPaw.02G117200 Carya illinoinensis HOM05D005370 ORTHO05D006659 9.1e-65 251.1 263 56.3
Manes.01G202000 Manihot esculenta HOM05D005370 ORTHO05D006659 9.1e-65 251.1 254 57.5
Ah.11g050020 Amaranthus hybridus HOM05D005370 ORTHO05D006659 5.9e-64 248.4 258 57.4
GSVIVG01018102001 Vitis vinifera HOM05D005370 ORTHO05D006659 7.7e-64 248.1 263 54.4
Prupe.1G175900 Prunus persica HOM05D005370 ORTHO05D006659 2.2e-63 246.5 255 55.3
TWI12G0023 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 2.9e-63 246.1 255 56.9
Ca_24537_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 2.5e-62 243.0 253 58.5
COL.COLO4_15774 Corchorus olitorius HOM05D005370 ORTHO05D006659 3.2e-62 242.7 258 53.9
Ca_14753_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 5.5e-62 241.9 253 58.1
Gorai.005G046600 Gossypium raimondii HOM05D005370 ORTHO05D006659 5.5e-62 241.9 258 55.0
CANSAT11G0223 Cannabis sativa HOM05D005370 ORTHO05D006659 9.4e-62 241.1 261 56.3
Nn3g19501 Nelumbo nucifera HOM05D005370 ORTHO05D006659 1.2e-61 240.7 259 55.2
Gohir.D02G042266 Gossypium hirsutum HOM05D005370 ORTHO05D006659 2.1e-61 240.0 258 54.7
Phvul.007G177000 Phaseolus vulgaris HOM05D005370 ORTHO05D006659 3.6e-61 239.2 255 57.6
Thecc.04G244800 Theobroma cacao HOM05D005370 ORTHO05D006659 8.0e-61 238.0 258 53.5
Ciclev10006717m.g Citrus clementina HOM05D005370 ORTHO05D006659 1.0e-60 237.7 254 53.1
CANSAT11G2293 Cannabis sativa HOM05D005370 ORTHO05D006659 1.4e-60 237.3 256 57.4
Cfa018256 Carpinus fangiana HOM05D005370 ORTHO05D006659 1.4e-60 237.3 273 51.3
Gohir.A02G035301 Gossypium hirsutum HOM05D005370 ORTHO05D006659 5.2e-60 235.3 258 53.5
MBI15_g19756_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 8.8e-60 234.6 256 55.1
Duzib052G0322 Durio zibethinus HOM05D005370 ORTHO05D006659 2.0e-59 233.4 298 49.0
QL06p015215 Quercus lobata HOM05D005370 ORTHO05D006659 2.6e-59 233.0 255 51.4
RcHm_v2.0_Chr4g0389631 Rosa chinensis HOM05D005370 ORTHO05D006659 3.4e-59 232.6 255 51.4
Aqoxy3G04193 Aquilegia oxysepala HOM05D005370 ORTHO05D006659 9.8e-59 231.1 256 53.1
DCAR_023471 Daucus carota HOM05D005370 ORTHO05D006659 1.7e-58 230.3 254 52.8
FvH4_4g02310 Fragaria vesca HOM05D005370 ORTHO05D006659 1.7e-58 230.3 254 51.2
FAN17G2982 Fragaria x ananassa HOM05D005370 ORTHO05D006659 2.2e-58 229.9 255 51.0
FAN22G1699 Fragaria x ananassa HOM05D005370 ORTHO05D006659 3.7e-58 229.2 255 50.6
VMungo0720G0865 Vigna mungo HOM05D005370 ORTHO05D006659 3.7e-58 229.2 254 54.7
Lj5g0014373 Lotus japonicus HOM05D005370 ORTHO05D006659 4.8e-58 228.8 253 56.5
PSO210G0029 Papaver somniferum HOM05D005370 ORTHO05D006659 1.4e-57 227.3 256 53.9
Lalb_Chr02g0142451 Lupinus albus HOM05D005370 ORTHO05D006659 1.8e-57 226.9 255 55.7
Sed0023556 Sechium edule HOM05D005370 ORTHO05D006659 2.4e-57 226.5 266 51.5
DCAR_028371 Daucus carota HOM05D005370 ORTHO05D006659 5.4e-57 225.3 266 50.4
TAR362G0430 Trochodendron aralioides HOM05D005370 ORTHO05D006659 7.0e-57 224.9 244 54.5
Oeu025788.2 Olea europaea HOM05D005370 ORTHO05D006659 1.2e-56 224.2 224 62.5
PSO238G0055 Papaver somniferum HOM05D005370 ORTHO05D006659 7.7e-56 221.5 255 52.9
Actinidia27521 Actinidia chinensis HOM05D005370 ORTHO05D006659 2.3e-55 219.9 262 53.4
CsaV3_5G004690 Cucumis sativus L. HOM05D005370 ORTHO05D006659 3.8e-55 219.2 258 51.6
MELO3C005475.2 Cucumis melo HOM05D005370 ORTHO05D006659 5.0e-55 218.8 259 52.1
Sopen01g042090 Solanum pennellii HOM05D005370 ORTHO05D006659 7.2e-54 214.9 185 65.9
PGSC0003DMG400017885 Solanum tuberosum HOM05D005370 ORTHO05D006659 7.2e-54 214.9 123 92.7
Medtr1g070900 Medicago truncatula HOM05D005370 ORTHO05D006659 1.0e-52 211.1 254 51.6
HPP92_015262 Vanilla planifolia HOM05D005370 ORTHO05D006659 1.8e-52 210.3 254 52.4
Dinv22486 Davidia involucrata HOM05D005370 ORTHO05D006659 1.2e-51 207.6 219 56.2
Nitab4.5_0002156g0030 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.5e-51 207.2 123 87.8
Nitab4.5_0001840g0120 Nicotiana tabacum HOM05D005370 ORTHO05D006659 2.0e-51 206.8 123 87.8
CDE07G1268 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 7.5e-51 204.9 255 49.4
Glyma.10G031500 Glycine max HOM05D005370 ORTHO05D006659 9.8e-51 204.5 253 50.6
FAN12G2588 Fragaria x ananassa HOM05D005370 ORTHO05D006659 2.2e-50 203.4 242 48.8
Prupe.2G050700 Prunus persica HOM05D005370 ORTHO05D006659 6.3e-50 201.8 255 48.2
ATR0665G285 Amborella trichopoda HOM05D005370 ORTHO05D006659 1.1e-49 201.1 257 47.9
arahy.Tifrunner.gnm1.ann1.T9F7M4 Arachis hypogaea HOM05D005370 ORTHO05D006659 1.4e-49 200.7 231 53.7
Nn1g02548 Nelumbo nucifera HOM05D005370 ORTHO05D000069 5.4e-49 198.7 220 54.1
arahy.Tifrunner.gnm1.ann1.XNPI4G Arachis hypogaea HOM05D005370 ORTHO05D006659 7.0e-49 198.4 257 49.4
Sc24g0004270 Simmondsia chinensis HOM05D005370 ORTHO05D006659 3.5e-48 196.1 224 53.1
MD04G1026200 Malus domestica HOM05D005370 ORTHO05D006659 1.0e-47 194.5 222 51.8
Haze_11274 Corylus avellana HOM05D005370 ORTHO05D006659 3.9e-47 192.6 230 51.3
arahy.Tifrunner.gnm1.ann1.7J2YFM Arachis hypogaea HOM05D005370 ORTHO05D006659 7.3e-46 188.3 252 48.0
Hund02875 Selenicereus undatus HOM05D005370 ORTHO05D006659 4.7e-45 185.7 249 44.6
Cpa.g.sc58.39 Carica papaya HOM05D005370 ORTHO05D006659 1.8e-44 183.7 226 50.4
ClCG01G004480 Citrullus lanatus HOM05D005370 ORTHO05D006659 3.1e-44 183.0 233 49.4
MSTRG.18281 Avicennia marina HOM05D005370 ORTHO05D006659 4.1e-41 172.6 99 87.9
SGA_v2.0_scaffold138G35287 Striga asiatica HOM05D005370 ORTHO05D006659 7.0e-41 171.8 99 88.9
Nitab4.5_0001903g0040 Nicotiana tabacum HOM05D005370 ORTHO05D006659 4.6e-40 169.1 95 91.6
Sp2g08480 Schrenkiella parvula HOM05D005370 ORTHO05D006659 6.0e-40 168.7 253 41.9
Thhalv10017901m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 3.9e-39 166.0 259 40.9
Zm00001eb201750 Zea mays HOM05D005370 ORTHO05D006659 1.1e-38 164.5 260 39.6
AT5G43680 Arabidopsis thaliana HOM05D005370 ORTHO05D006659 2.5e-38 163.3 253 43.1
BcaC06g31683 Brassica carinata HOM05D005370 ORTHO05D006659 3.3e-38 162.9 253 43.1
BraA06t27643Z Brassica rapa HOM05D005370 ORTHO05D006659 3.3e-38 162.9 255 42.4
CARHR179930 Cardamine hirsuta HOM05D005370 ORTHO05D006659 3.3e-38 162.9 254 41.3
BcaC06g34636 Brassica carinata HOM05D005370 ORTHO05D006659 4.3e-38 162.5 252 40.9
C07p26250 Brassica napus HOM05D005370 ORTHO05D006659 4.3e-38 162.5 252 40.9
BolC7t43153H Brassica oleracea HOM05D005370 ORTHO05D006659 4.3e-38 162.5 252 40.9
Haze_21184 Corylus avellana HOM05D005370 ORTHO05D006659 4.3e-38 162.5 311 38.6
AL8G16570 Arabidopsis lyrata HOM05D005370 ORTHO05D006659 2.1e-37 160.2 253 39.9
Prupe.1G027700 Prunus persica HOM05D005370 ORTHO05D006659 4.7e-37 159.1 202 50.5
A06p47750 Brassica napus HOM05D005370 ORTHO05D006659 8.0e-37 158.3 254 40.9
TPR.G39035 Trifolium pratense HOM05D005370 ORTHO05D000069 1.1e-36 157.9 229 46.7
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 1.8e-36 157.1 277 39.7
Psat3g119240 Pisum sativum HOM05D005370 ORTHO05D006659 3.1e-36 156.4 241 45.2
Glyma.02G142900 Glycine max HOM05D005370 ORTHO05D006659 4.0e-36 156.0 103 77.7
Carub.0008s0497 Capsella rubella HOM05D005370 ORTHO05D006659 6.8e-36 155.2 253 37.9
Eucgr.G02606 Eucalyptus grandis HOM05D005370 ORTHO05D006659 7.5e-35 151.8 196 49.0
Psat5g092160 Pisum sativum HOM05D009633 ORTHO05D011907 1.3e-34 151.0 100 76.0
Mapoly0029s0143 Marchantia polymorpha HOM05D005370 ORTHO05D006659 1.4e-33 147.5 265 40.0
Pp3c17_23420 Physcomitrium patens HOM05D005370 ORTHO05D006659 2.4e-33 146.7 248 39.9
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 2.1e-32 143.7 100 75.0
Aa31LG5G3560 Aethionema arabicum HOM05D005370 ORTHO05D006659 1.5e-30 137.5 252 37.7
Nn8g40523 Nelumbo nucifera HOM05D005370 ORTHO05D006659 6.0e-24 115.5 89 66.3
Os11g0550900 Oryza sativa ssp. japonica HOM05D005370 ORTHO05D006659 7.8e-24 115.2 254 33.1
Psat1g083920 Pisum sativum HOM05D005370 ORTHO05D006659 7.8e-24 115.2 190 41.6
Actinidia19979 Actinidia chinensis HOM05D005370 ORTHO05D006659 1.0e-23 114.8 94 66.0
Psat0s8363g0040 Pisum sativum HOM05D005370 ORTHO05D006659 1.7e-23 114.0 190 41.1
CBR_g32014 Chara braunii HOM05D005370 ORTHO05D006659 2.3e-23 113.6 257 31.5
Cc01_g05520 Coffea canephora HOM05D005370 ORTHO05D006659 1.9e-22 110.5 174 44.3
Nitab4.5_0004235g0010 Nicotiana tabacum HOM05D005370 ORTHO05D006659 3.6e-21 106.3 62 88.7
AagrBONN_evm.TU.Sc2ySwM_228.5248 Anthoceros agrestis HOM05D005370 ORTHO05D006659 2.0e-19 100.5 247 32.8
SEGI_11901 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 2.4e-17 93.6 66 69.7
Cc01_g05510 Coffea canephora HOM05D005370 ORTHO05D006659 7.1e-17 92.0 62 75.8
Duzib212G0616 Durio zibethinus HOM05D005370 ORTHO05D006659 6.0e-16 89.0 198 35.9
Psat3g119160 Pisum sativum HOM05D005370 ORTHO05D006659 1.0e-15 88.2 163 41.1
Psat3g119360 Pisum sativum HOM05D005370 ORTHO05D006659 1.7e-15 87.4 53 81.1
MBI11_g15920_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 2.3e-15 87.0 158 41.8
MBI16_g44196_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 3.0e-15 86.7 171 39.2
MBI18_g19775_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 7.3e-14 82.0 185 34.6
MBI02_g40862_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.3e-13 81.3 169 37.3
Solyc01g098540.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 6.2e-13 79.0 62 72.6
CAN.G257.103 Capsicum annuum HOM05D005370 ORTHO05D006659 8.1e-13 78.6 54 74.1
Thhalv10003352m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 4.0e-12 76.3 118 39.0
MBI16_g45671_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 4.0e-12 76.3 200 33.5
SEGI_21191 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 2.6e-11 73.6 110 49.1
Psat1g084080 Pisum sativum HOM05D005370 ORTHO05D006659 1.7e-10 70.9 156 34.6
SMO116G0410 Selaginella moellendorffii HOM05D005370 ORTHO05D006659 9.3e-09 65.1 224 27.7
SEGI_37606 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 5.1e-07 59.3 57 52.6
QL06p015203 Quercus lobata HOM05D005370 ORTHO05D006659 9.6e-06 55.1 34 73.5


User provided reference genes

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