Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g080870.1 Solanum lycopersicum HOM05D004346 ORTHO05D005153 4.0e-41 171.0 87 100.0
Sopen04g034450 Solanum pennellii HOM05D004346 ORTHO05D005153 4.0e-41 171.0 87 100.0
PGSC0003DMG400003704 Solanum tuberosum HOM05D004346 ORTHO05D005153 1.2e-40 169.5 87 98.9
CAN.G851.33 Capsicum annuum HOM05D004346 ORTHO05D005153 1.5e-40 169.1 86 98.8
MBI01_g12679_MAGBIO Magnolia biondii HOM05D004346 ORTHO05D005153 1.3e-39 166.0 87 96.6
Peaxi162Scf00189g00121 Petunia axillaris HOM05D004346 ORTHO05D005153 1.3e-39 166.0 87 96.6
SalBow8G0366 Salvia bowleyana HOM05D004346 ORTHO05D005153 1.3e-39 166.0 87 96.6
SalBow8G2486 Salvia bowleyana HOM05D004346 ORTHO05D005153 1.3e-39 166.0 87 96.6
DCAR_009955 Daucus carota HOM05D004346 ORTHO05D005153 1.7e-39 165.6 86 96.5
Dinv31796 Davidia involucrata HOM05D004346 ORTHO05D005153 1.7e-39 165.6 87 96.6
Migut.N03118 Erythranthe guttata HOM05D004346 ORTHO05D005153 1.7e-39 165.6 87 96.6
CDE03G0026 Ceratophyllum demersum HOM05D004346 ORTHO05D005153 2.2e-39 165.2 85 97.6
Duzib093G0381 Durio zibethinus HOM05D004346 ORTHO05D005153 2.9e-39 164.9 87 96.6
Duzib116G0866 Durio zibethinus HOM05D004346 ORTHO05D005153 2.9e-39 164.9 87 96.6
Thecc.08G035100 Theobroma cacao HOM05D004346 ORTHO05D005153 2.9e-39 164.9 87 96.6
COL.COLO4_26227 Corchorus olitorius HOM05D004346 ORTHO05D005153 3.7e-39 164.5 86 96.5
TAR068G0006 Trochodendron aralioides HOM05D004346 ORTHO05D005153 3.7e-39 164.5 86 96.5
Manes.18G022200 Manihot esculenta HOM05D004346 ORTHO05D005153 6.4e-39 163.7 87 95.4
TWI56G1281 Tripterygium wilfordii HOM05D004346 ORTHO05D005153 6.4e-39 163.7 87 95.4
Gohir.A05G189500 Gossypium hirsutum HOM05D004346 ORTHO05D005153 8.3e-39 163.3 87 95.4
Gohir.D05G192800 Gossypium hirsutum HOM05D004346 ORTHO05D005153 8.3e-39 163.3 87 95.4
Gorai.009G198000 Gossypium raimondii HOM05D004346 ORTHO05D005153 8.3e-39 163.3 87 95.4
Nitab4.5_0002156g0110 Nicotiana tabacum HOM05D004346 ORTHO05D005153 8.3e-39 163.3 86 95.3
Potri.002G029900 Populus trichocarpa HOM05D004346 ORTHO05D005153 8.3e-39 163.3 87 95.4
CANSAT25G3810 Cannabis sativa HOM05D004346 ORTHO05D005153 1.4e-38 162.5 87 95.4
Dinv39468 Davidia involucrata HOM05D004346 ORTHO05D005153 1.4e-38 162.5 87 94.3
Sabra02G0023800 Salix brachista HOM05D004346 ORTHO05D005153 1.4e-38 162.5 87 94.3
Ciclev10002101m.g Citrus clementina HOM05D004346 ORTHO05D005153 1.9e-38 162.2 86 94.2
Atru.chr13.385 Acer truncatum HOM05D004346 ORTHO05D005153 2.4e-38 161.8 86 94.2
ATR0680G160 Amborella trichopoda HOM05D004346 ORTHO05D005153 2.4e-38 161.8 86 94.2
CSS0003618 Camellia sinensis var. sinensis HOM05D004346 ORTHO05D005153 2.4e-38 161.8 87 93.1
Cpa.g.sc698.2 Carica papaya HOM05D004346 ORTHO05D005153 2.4e-38 161.8 87 94.3
ECA232G0130 Erigeron canadensis HOM05D004346 ORTHO05D005153 2.4e-38 161.8 86 94.2
Lsat_1_v5_gn_5_25761 Lactuca sativa HOM05D004346 ORTHO05D005153 2.4e-38 161.8 86 94.2
Cfa013888 Carpinus fangiana HOM05D004346 ORTHO05D005153 3.2e-38 161.4 87 94.3
CiPaw.07G155800 Carya illinoinensis HOM05D004346 ORTHO05D005153 3.2e-38 161.4 87 94.3
Haze_22565 Corylus avellana HOM05D004346 ORTHO05D005153 3.2e-38 161.4 87 94.3
MSTRG.24272 Avicennia marina HOM05D004346 ORTHO05D005153 4.1e-38 161.0 87 92.0
Lj4C32T10 Lonicera japonica HOM05D004346 ORTHO05D005153 4.1e-38 161.0 86 93.0
Nn5g29149 Nelumbo nucifera HOM05D004346 ORTHO05D005153 4.1e-38 161.0 87 93.1
Oeu030608.1 Olea europaea HOM05D004346 ORTHO05D005153 5.4e-38 160.6 87 93.1
PSO541G5233 Papaver somniferum HOM05D004346 ORTHO05D005153 5.4e-38 160.6 87 93.1
PSO675G8115 Papaver somniferum HOM05D004346 ORTHO05D005153 5.4e-38 160.6 87 93.1
Nitab4.5_0001861g0130 Nicotiana tabacum HOM05D004346 ORTHO05D005153 7.0e-38 160.2 87 93.1
Prupe.1G372600 Prunus persica HOM05D004346 ORTHO05D005153 7.0e-38 160.2 87 93.1
Actinidia15370 Actinidia chinensis HOM05D004346 ORTHO05D005153 9.2e-38 159.8 85 92.9
Aqoxy6G01229 Aquilegia oxysepala HOM05D004346 ORTHO05D005153 9.2e-38 159.8 87 92.0
Oeu030408.1 Olea europaea HOM05D004346 ORTHO05D005153 9.2e-38 159.8 87 93.1
ClCG05G018660 Citrullus lanatus HOM05D004346 ORTHO05D005153 1.2e-37 159.5 85 94.1
MELO3C003788.2 Cucumis melo HOM05D004346 ORTHO05D005153 1.2e-37 159.5 85 94.1
FAN15G2637 Fragaria x ananassa HOM05D004346 ORTHO05D005153 1.2e-37 159.5 86 93.0
FAN20G0669 Fragaria x ananassa HOM05D004346 ORTHO05D005153 1.2e-37 159.5 86 93.0
FAN27G0767 Fragaria x ananassa HOM05D004346 ORTHO05D005153 1.2e-37 159.5 86 93.0
QL02p010362 Quercus lobata HOM05D004346 ORTHO05D005153 1.2e-37 159.5 86 93.0
RcHm_v2.0_Chr6g0301881 Rosa chinensis HOM05D004346 ORTHO05D005153 1.2e-37 159.5 86 93.0
arahy.Tifrunner.gnm1.ann1.FS02K0 Arachis hypogaea HOM05D004346 ORTHO05D005153 1.6e-37 159.1 86 93.0
TAR376G0822 Trochodendron aralioides HOM05D004346 ORTHO05D005153 1.6e-37 159.1 86 91.9
Eucgr.F01853 Eucalyptus grandis HOM05D004346 ORTHO05D005153 2.0e-37 158.7 85 92.9
TWI36G0841 Tripterygium wilfordii HOM05D004346 ORTHO05D005153 2.0e-37 158.7 87 92.0
CsaV3_3G045520 Cucumis sativus L. HOM05D004346 ORTHO05D005153 2.7e-37 158.3 85 92.9
MD08G1023400 Malus domestica HOM05D004346 ORTHO05D005153 2.7e-37 158.3 87 92.0
Glyma.04G028400 Glycine max HOM05D004346 ORTHO05D005153 3.5e-37 157.9 86 91.9
Glyma.06G028500 Glycine max HOM05D004346 ORTHO05D005153 3.5e-37 157.9 86 91.9
Potri.005G232800 Populus trichocarpa HOM05D004346 ORTHO05D005153 3.5e-37 157.9 87 93.1
AUR62034542 Chenopodium quinoa HOM05D004346 ORTHO05D005153 6.0e-37 157.1 87 92.0
Duzib041G0460 Durio zibethinus HOM05D004346 ORTHO05D005153 6.0e-37 157.1 87 93.1
Gohir.D01G101600 Gossypium hirsutum HOM05D004346 ORTHO05D005153 6.0e-37 157.1 87 92.0
Gorai.002G126100 Gossypium raimondii HOM05D004346 ORTHO05D005153 6.0e-37 157.1 87 92.0
THA.LOC104813810 Tarenaya hassleriana HOM05D004346 ORTHO05D005153 6.0e-37 157.1 87 90.8
Aa31LG4G5700 Aethionema arabicum HOM05D004346 ORTHO05D005153 7.8e-37 156.8 86 90.7
Ah.10g035530 Amaranthus hybridus HOM05D004346 ORTHO05D005153 7.8e-37 156.8 86 91.9
CiPaw.08G061400 Carya illinoinensis HOM05D004346 ORTHO05D005153 7.8e-37 156.8 87 92.0
FvH4_2g39180 Fragaria vesca HOM05D004346 ORTHO05D005153 2.3e-36 155.2 86 90.7
VMungo1309G1438 Vigna mungo HOM05D004346 ORTHO05D005153 3.0e-36 154.8 86 90.7
Thhalv10008437m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 3.9e-36 154.5 85 90.6
Lj1g0013800 Lotus japonicus HOM05D004346 ORTHO05D005153 3.9e-36 154.5 86 90.7
Phvul.009G012900 Phaseolus vulgaris HOM05D004346 ORTHO05D005153 3.9e-36 154.5 86 89.5
Eucgr.F01605 Eucalyptus grandis HOM05D004346 ORTHO05D005153 5.0e-36 154.1 87 89.7
Phvul.001G010700 Phaseolus vulgaris HOM05D004346 ORTHO05D005153 5.0e-36 154.1 87 90.8
THA.LOC104809066 Tarenaya hassleriana HOM05D004346 ORTHO05D005153 5.0e-36 154.1 87 89.7
AL2G35430 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 6.6e-36 153.7 86 89.5
AT1G75460 Arabidopsis thaliana HOM05D004346 ORTHO05D005153 6.6e-36 153.7 86 89.5
BcaB05g24908 Brassica carinata HOM05D004346 ORTHO05D005153 6.6e-36 153.7 86 89.5
BcaC03g15576 Brassica carinata HOM05D004346 ORTHO05D005153 6.6e-36 153.7 86 89.5
A02p19950 Brassica napus HOM05D004346 ORTHO05D005153 6.6e-36 153.7 86 89.5
C02p32610 Brassica napus HOM05D004346 ORTHO05D005153 6.6e-36 153.7 86 89.5
BolC2t09292H Brassica oleracea HOM05D004346 ORTHO05D005153 6.6e-36 153.7 86 89.5
BraA02t07032Z Brassica rapa HOM05D004346 ORTHO05D005153 6.6e-36 153.7 86 89.5
Carub.0002s2234 Capsella rubella HOM05D004346 ORTHO05D005153 6.6e-36 153.7 86 89.5
CARHR068870 Cardamine hirsuta HOM05D004346 ORTHO05D005153 6.6e-36 153.7 86 89.5
Thhalv10019638m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 6.6e-36 153.7 86 89.5
Psat0s471g0440 Pisum sativum HOM05D004346 ORTHO05D005153 6.6e-36 153.7 86 90.7
TPR.G12390 Trifolium pratense HOM05D004346 ORTHO05D005153 6.6e-36 153.7 86 90.7
Lalb_Chr23g0266421 Lupinus albus HOM05D004346 ORTHO05D005153 8.6e-36 153.3 86 89.5
CARHR020270 Cardamine hirsuta HOM05D004346 ORTHO05D005153 1.1e-35 152.9 85 89.4
Sp5g30610 Schrenkiella parvula HOM05D004346 ORTHO05D005153 1.5e-35 152.5 86 88.4
AL1G32470 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 1.9e-35 152.1 85 88.2
AT1G19740 Arabidopsis thaliana HOM05D004346 ORTHO05D005153 1.9e-35 152.1 85 88.2
A06p15850 Brassica napus HOM05D004346 ORTHO05D005153 1.9e-35 152.1 87 88.5
BraA06t24697Z Brassica rapa HOM05D004346 ORTHO05D005153 1.9e-35 152.1 87 88.5
Carub.0001s1929 Capsella rubella HOM05D004346 ORTHO05D005153 1.9e-35 152.1 85 88.2
Medtr3g112420 Medicago truncatula HOM05D004346 ORTHO05D005153 1.9e-35 152.1 86 89.5
Sp1g17580 Schrenkiella parvula HOM05D004346 ORTHO05D005153 1.9e-35 152.1 85 88.2
VMungo0647G1706 Vigna mungo HOM05D004346 ORTHO05D005153 1.9e-35 152.1 87 88.5
MD15G1020800 Malus domestica HOM05D004346 ORTHO05D005153 3.3e-35 151.4 87 88.5
Sed0026579 Sechium edule HOM05D004346 ORTHO05D005153 3.3e-35 151.4 85 90.6
Actinidia22506 Actinidia chinensis HOM05D004346 ORTHO05D005153 4.3e-35 151.0 79 94.9
Gohir.D06G002460 Gossypium hirsutum HOM05D004346 ORTHO05D005153 5.6e-35 150.6 86 89.5
Gorai.010G007200 Gossypium raimondii HOM05D004346 ORTHO05D005153 5.6e-35 150.6 86 89.5
Rhsim06G0027900 Rhododendron simsii HOM05D004346 ORTHO05D005153 5.6e-35 150.6 88 88.6
Sed0026661 Sechium edule HOM05D004346 ORTHO05D009095 7.3e-35 150.2 82 91.5
Sc15g0007210 Simmondsia chinensis HOM05D004346 ORTHO05D005153 2.1e-34 148.7 86 87.2
unitig_21.g20157 Utricularia gibba HOM05D004346 ORTHO05D005153 2.1e-34 148.7 87 87.4
Zm00001eb105790 Zea mays HOM05D004346 ORTHO05D005153 2.1e-34 148.7 86 82.6
Zm00001eb322430 Zea mays HOM05D004346 ORTHO05D005153 2.1e-34 148.7 86 82.6
Cc10_g02310 Coffea canephora HOM05D004346 ORTHO05D005153 3.6e-34 147.9 79 93.7
SGA_v2.0_scaffold326G48739 Striga asiatica HOM05D004346 ORTHO05D005153 3.6e-34 147.9 87 86.2
Gohir.A06G006700 Gossypium hirsutum HOM05D004346 ORTHO05D005153 4.7e-34 147.5 87 88.5
Os07g0509700 Oryza sativa ssp. japonica HOM05D004346 ORTHO05D005153 4.7e-34 147.5 86 81.4
C05p18170 Brassica napus HOM05D004346 ORTHO05D005153 1.1e-33 146.4 88 86.4
BolC5t30525H Brassica oleracea HOM05D004346 ORTHO05D005153 1.1e-33 146.4 88 86.4
unitig_22.g6787 Utricularia gibba HOM05D004346 ORTHO05D005153 1.1e-33 146.4 90 87.8
Mapoly0123s0028 Marchantia polymorpha HOM05D004346 ORTHO05D005153 1.4e-33 146.0 86 88.4
Thhalv10029286m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 1.8e-33 145.6 85 85.9
Pp3c2_28030 Physcomitrium patens HOM05D004346 ORTHO05D005153 6.8e-33 143.7 87 82.8
SEGI_19140 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 8.9e-33 143.3 87 82.8
Glyma.14G070400 Glycine max HOM05D004346 ORTHO05D005153 1.2e-32 142.9 88 84.1
Ca_02070_v3 Cicer arietinum L. HOM05D004346 ORTHO05D005153 1.5e-32 142.5 81 88.9
Zm00001eb380450 Zea mays HOM05D004346 ORTHO05D005153 2.6e-32 141.7 86 79.1
Thhalv10027193m.g Eutrema salsugineum HOM05D004346 ORTHO05D005153 4.4e-32 141.0 85 83.5
SMO340G0026 Selaginella moellendorffii HOM05D004346 ORTHO05D005153 1.7e-31 139.0 86 83.7
HPP92_007934 Vanilla planifolia HOM05D004346 ORTHO05D005153 2.9e-31 138.3 89 80.9
SEGI_26379 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 3.7e-31 137.9 87 81.6
CBR_g8224 Chara braunii HOM05D004346 ORTHO05D005153 1.6e-29 132.5 87 77.0
CBR_g51048 Chara braunii HOM05D004346 ORTHO05D005153 8.1e-26 120.2 86 69.8
Nn1g05970 Nelumbo nucifera HOM05D004346 ORTHO05D005153 5.2e-25 117.5 64 90.6
Nn5g30640 Nelumbo nucifera HOM05D004346 ORTHO05D005153 2.0e-24 115.5 68 83.8
BcaB07g31988 Brassica carinata HOM05D004346 ORTHO05D005153 8.3e-23 110.2 91 68.1
AL3G42160 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 1.0e-20 103.2 66 77.3
AL8G23230 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 1.3e-20 102.8 56 85.7
AL5G17660 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 5.1e-20 100.9 56 82.1
AL7G10400 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 2.5e-19 98.6 55 85.5
RcHm_v2.0_Chr5g0055761 Rosa chinensis HOM05D004346 ORTHO05D005153 9.5e-19 96.7 62 77.4
AL2G41610 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 3.6e-18 94.7 55 83.6
EL10Ac1g00581 Beta vulgaris HOM05D004346 ORTHO05D005153 6.6e-12 73.9 40 95.0
Nitab4.5_0001963g0020 Nicotiana tabacum HOM05D004346 ORTHO05D005153 3.3e-11 71.6 53 71.7
AL7G11380 Arabidopsis lyrata HOM05D004346 ORTHO05D005153 7.3e-11 70.5 36 91.7
RcHm_v2.0_Chr6g0290711 Rosa chinensis HOM05D004346 ORTHO05D005153 3.2e-06 55.1 38 73.7


User provided reference genes

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