Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 9.3e-133 476.9 239 100.0
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 4.3e-122 441.4 227 96.0
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 3.9e-107 391.7 229 80.3
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 6.7e-99 364.4 227 74.9
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 1.5e-98 363.2 225 76.9
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 9.7e-98 360.5 226 75.2
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 4.8e-97 358.2 225 76.0
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 4.1e-96 355.1 255 72.9
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 4.1e-96 355.1 225 75.6
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.6e-95 353.2 225 75.1
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.0e-94 350.5 224 74.1
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 8.5e-94 347.4 225 72.4
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 1.9e-93 346.3 229 70.7
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 1.9e-93 346.3 225 72.0
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 5.5e-93 344.7 223 74.4
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 7.2e-93 344.4 225 72.0
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 1.2e-92 343.6 217 76.0
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 1.6e-92 343.2 217 75.6
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 4.7e-92 341.7 217 75.6
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 6.1e-92 341.3 224 72.8
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 8.0e-92 340.9 225 73.3
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.0e-91 340.5 225 73.3
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 2.3e-91 339.3 223 71.7
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 4.0e-91 338.6 230 69.1
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 1.2e-90 337.0 220 70.9
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 1.5e-90 336.7 222 71.6
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 2.6e-90 335.9 228 69.3
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 2.6e-90 335.9 220 71.4
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 4.4e-90 335.1 221 73.8
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 5.7e-90 334.7 226 69.5
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.7e-89 333.2 219 70.3
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.2e-89 332.8 219 70.3
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.2e-89 332.8 219 70.3
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 2.8e-89 332.4 218 71.6
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 4.8e-89 331.6 228 69.3
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 6.3e-89 331.3 221 68.8
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 8.3e-89 330.9 218 71.6
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 8.3e-89 330.9 230 68.7
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 1.1e-88 330.5 224 71.0
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 1.4e-88 330.1 226 71.2
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 2.4e-88 329.3 219 69.4
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.4e-88 329.3 218 70.6
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 9.1e-88 327.4 226 67.7
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 1.6e-87 326.6 216 70.8
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 2.0e-87 326.2 220 68.6
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 3.5e-87 325.5 221 70.6
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 3.5e-87 325.5 224 67.9
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 5.9e-87 324.7 216 70.8
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 1.7e-86 323.2 220 68.6
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 2.3e-86 322.8 226 69.5
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 2.9e-86 322.4 224 68.3
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.9e-86 322.4 230 67.0
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 5.0e-86 321.6 223 67.7
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 6.5e-86 321.2 220 68.2
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.1e-85 320.5 224 67.4
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 1.5e-85 320.1 229 65.9
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 1.9e-85 319.7 225 68.4
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 3.3e-85 318.9 223 68.6
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 9.5e-85 317.4 200 74.5
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 2.1e-84 316.2 224 68.3
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 3.6e-84 315.5 227 66.5
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 3.6e-84 315.5 230 65.7
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 8.0e-84 314.3 224 67.4
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 1.0e-83 313.9 221 66.1
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 1.8e-83 313.2 226 67.3
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 1.8e-83 313.2 225 66.7
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 5.2e-83 311.6 231 61.9
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 6.8e-83 311.2 228 62.3
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 2.6e-82 309.3 221 67.0
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 3.4e-82 308.9 224 62.9
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 1.7e-81 306.6 234 62.8
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 3.7e-81 305.4 206 68.9
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 3.7e-81 305.4 285 56.5
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 3.7e-81 305.4 254 61.0
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 6.3e-81 304.7 216 67.1
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 8.3e-81 304.3 223 61.9
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 8.3e-81 304.3 221 62.4
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.4e-80 303.5 219 63.9
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 1.8e-80 303.1 155 96.8
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 3.1e-80 302.4 217 64.1
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.1e-80 302.4 228 66.2
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 2.0e-79 299.7 217 63.6
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 2.0e-79 299.7 250 60.0
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 2.7e-79 299.3 219 63.5
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 3.5e-79 298.9 220 62.3
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 4.5e-79 298.5 218 63.3
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 5.9e-79 298.1 216 65.3
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.7e-78 296.6 217 63.1
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 1.5e-77 293.5 228 63.6
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 3.3e-77 292.4 226 60.2
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 3.3e-77 292.4 230 63.0
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 3.3e-77 292.4 230 63.0
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 5.6e-77 291.6 217 61.3
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 5.6e-77 291.6 187 73.8
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 7.3e-77 291.2 217 61.3
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 7.3e-77 291.2 217 61.3
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 9.5e-77 290.8 217 61.3
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 1.2e-76 290.4 217 61.3
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 1.2e-76 290.4 217 61.3
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.8e-76 289.3 228 66.2
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 8.0e-76 287.7 221 66.1
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 3.0e-75 285.8 217 60.8
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 1.5e-74 283.5 196 68.9
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 1.7e-73 280.0 220 60.0
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.2e-73 279.6 229 64.2
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 2.2e-73 279.6 215 63.3
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 1.1e-72 277.3 217 57.6
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 5.4e-72 275.0 199 62.8
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 5.4e-72 275.0 188 69.1
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 7.0e-72 274.6 218 60.1
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 9.2e-72 274.2 217 56.7
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 9.2e-72 274.2 192 65.6
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.2e-71 273.9 217 59.4
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 3.5e-71 272.3 218 60.1
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 3.5e-71 272.3 219 57.1
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.0e-70 270.8 219 56.2
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 1.0e-70 270.8 224 59.8
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 6.6e-70 268.1 215 59.5
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 1.1e-69 267.3 220 56.4
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 1.5e-69 266.9 217 60.4
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 9.5e-69 264.2 220 55.9
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 9.5e-69 264.2 220 55.9
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 1.6e-68 263.5 220 55.9
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 1.6e-68 263.5 220 55.9
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 1.6e-68 263.5 220 55.9
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 5.8e-66 255.0 222 54.1
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 5.8e-66 255.0 222 54.1
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 5.8e-66 255.0 192 62.0
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 4.1e-64 248.8 157 74.5
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 3.5e-63 245.7 209 55.5
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 3.9e-62 242.3 207 55.6
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 1.9e-61 240.0 160 70.0
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 3.6e-60 235.7 188 56.4
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 4.0e-59 232.3 241 51.9
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 6.8e-59 231.5 160 65.0
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 6.0e-55 218.4 173 57.2
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 1.6e-52 210.3 217 46.5
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 1.1e-51 207.6 210 47.1
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 9.9e-50 201.1 176 57.4
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 2.2e-49 199.9 218 44.0
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 4.9e-49 198.7 219 47.0
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 1.1e-48 197.6 216 46.8
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 3.9e-46 189.1 156 55.1
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 4.9e-41 172.2 119 61.3
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 1.9e-40 170.2 118 68.6
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 4.2e-40 169.1 178 47.8
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.7e-39 166.4 124 68.5
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 7.8e-39 164.9 119 61.3
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 2.9e-33 146.4 147 45.6
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 1.3e-30 137.5 130 56.2
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 1.3e-28 131.0 86 70.9
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 9.3e-24 114.8 209 30.1
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 1.2e-23 114.4 75 68.0
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.8e-20 103.2 154 40.9
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.8e-20 103.2 154 40.9
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 2.4e-19 100.1 67 73.1
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 1.5e-18 97.4 52 84.6
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 7.6e-18 95.1 78 53.8
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 3.5e-15 86.3 80 52.5
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.0e-10 70.5 71 46.5
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 2.9e-09 66.6 50 64.0
Medtr3g450410 Medicago truncatula HOM05D001742 ORTHO05D001689 1.6e-07 60.8 223 27.8
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 6.1e-07 58.9 42 61.9
Psat5g188880 Pisum sativum HOM05D001742 ORTHO05D001689 1.8e-06 57.4 204 27.0
MELO3C022964.2 Cucumis melo HOM05D001742 ORTHO05D001689 5.1e-06 55.8 201 27.4


User provided reference genes

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