Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g080630.4 Solanum lycopersicum HOM05D006275 ORTHO05D007839 1.4e-84 316.2 156 100.0
PGSC0003DMG400003696 Solanum tuberosum HOM05D006275 ORTHO05D007839 4.0e-68 261.5 130 97.7
Nitab4.5_0003265g0060 Nicotiana tabacum HOM05D006275 ORTHO05D007839 1.1e-62 243.4 132 89.4
Nitab4.5_0009228g0020 Nicotiana tabacum HOM05D006275 ORTHO05D007839 2.1e-61 239.2 130 88.5
Peaxi162Scf00140g10025 Petunia axillaris HOM05D006275 ORTHO05D007839 3.4e-59 231.9 128 85.2
Sopen04g034220 Solanum pennellii HOM05D006275 ORTHO05D007839 1.9e-57 226.1 107 100.0
SalBow7G2217 Salvia bowleyana HOM05D006275 ORTHO05D007839 1.3e-50 203.4 133 75.2
MSTRG.1264 Avicennia marina HOM05D006275 ORTHO05D007839 6.4e-50 201.1 132 76.5
Migut.J00614 Erythranthe guttata HOM05D006275 ORTHO05D007839 1.2e-48 196.8 132 74.2
Oeu002824.1 Olea europaea HOM05D006275 ORTHO05D007839 1.6e-48 196.4 132 72.7
Oeu047769.1 Olea europaea HOM05D006275 ORTHO05D007839 2.1e-48 196.1 132 73.5
Migut.N00484 Erythranthe guttata HOM05D006275 ORTHO05D007839 3.5e-48 195.3 132 70.5
CSS0002686 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 6.7e-47 191.0 149 65.1
CSS0030866 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 6.7e-47 191.0 149 65.1
HanXRQChr09g0268981 Helianthus annuus HOM05D006275 ORTHO05D007839 6.7e-47 191.0 134 70.9
Dinv39443 Davidia involucrata HOM05D006275 ORTHO05D007839 2.5e-46 189.1 129 69.0
DCAR_022467 Daucus carota HOM05D006275 ORTHO05D007839 5.6e-46 188.0 130 71.5
Lsat_1_v5_gn_4_117720 Lactuca sativa HOM05D006275 ORTHO05D007839 5.6e-46 188.0 134 67.2
SGA_v2.0_scaffold201G41391 Striga asiatica HOM05D006275 ORTHO05D007839 2.1e-45 186.0 132 68.9
Cc09_g08950 Coffea canephora HOM05D006275 ORTHO05D007839 4.8e-45 184.9 132 71.2
GSVIVG01009748001 Vitis vinifera HOM05D006275 ORTHO05D007839 4.8e-45 184.9 130 69.2
unitig_46.g17937 Utricularia gibba HOM05D006275 ORTHO05D007839 1.8e-44 183.0 129 69.0
Ah.05g177020 Amaranthus hybridus HOM05D006275 ORTHO05D007839 6.9e-44 181.0 134 67.2
EL10Ac1g00643 Beta vulgaris HOM05D006275 ORTHO05D007839 6.9e-44 181.0 134 68.7
ECA232G2653 Erigeron canadensis HOM05D006275 ORTHO05D007839 6.9e-44 181.0 133 64.7
AUR62038041 Chenopodium quinoa HOM05D006275 ORTHO05D007839 3.4e-43 178.7 130 67.7
HanXRQChr16g0501501 Helianthus annuus HOM05D006275 ORTHO05D007839 5.8e-43 177.9 131 67.2
CANSAT56G0974 Cannabis sativa HOM05D006275 ORTHO05D007839 7.6e-43 177.6 130 66.9
Sc02g0005820 Simmondsia chinensis HOM05D006275 ORTHO05D007839 1.7e-42 176.4 136 65.4
AUR62014497 Chenopodium quinoa HOM05D006275 ORTHO05D007839 2.9e-42 175.6 136 65.4
MELO3C003811.2 Cucumis melo HOM05D006275 ORTHO05D007839 1.4e-41 173.3 147 62.6
THA.LOC104811376 Tarenaya hassleriana HOM05D006275 ORTHO05D007839 1.4e-41 173.3 143 64.3
Eucgr.F01878 Eucalyptus grandis HOM05D006275 ORTHO05D007839 1.9e-41 172.9 130 63.1
Manes.05G156800 Manihot esculenta HOM05D006275 ORTHO05D007839 1.9e-41 172.9 132 64.4
Cpa.g.c33902 Carica papaya HOM05D006275 ORTHO05D007839 2.5e-41 172.6 131 64.9
FAN15G2697 Fragaria x ananassa HOM05D006275 ORTHO05D007839 4.2e-41 171.8 133 65.4
A05p02860 Brassica napus HOM05D006275 ORTHO05D007839 7.1e-41 171.0 138 62.3
C04p03490 Brassica napus HOM05D006275 ORTHO05D007839 7.1e-41 171.0 138 62.3
BraA05t19277Z Brassica rapa HOM05D006275 ORTHO05D007839 7.1e-41 171.0 138 62.3
CsaV3_3G045380 Cucumis sativus L. HOM05D006275 ORTHO05D007839 7.1e-41 171.0 135 65.2
CSS0039262 Camellia sinensis var. sinensis HOM05D006275 ORTHO05D007839 1.2e-40 170.2 129 67.4
Sed0006872 Sechium edule HOM05D006275 ORTHO05D007839 1.2e-40 170.2 133 63.9
FAN27G1059 Fragaria x ananassa HOM05D006275 ORTHO05D007839 1.6e-40 169.9 133 64.7
ClCG05G018790 Citrullus lanatus HOM05D006275 ORTHO05D007839 2.1e-40 169.5 135 64.4
RcHm_v2.0_Chr6g0301461 Rosa chinensis HOM05D006275 ORTHO05D007839 2.1e-40 169.5 137 65.0
A07p40910 Brassica napus HOM05D006275 ORTHO05D007839 2.7e-40 169.1 139 61.2
BraA07t31631Z Brassica rapa HOM05D006275 ORTHO05D007839 2.7e-40 169.1 139 61.2
Nn1g04018 Nelumbo nucifera HOM05D006275 ORTHO05D007839 2.7e-40 169.1 133 65.4
PSO731G0021 Papaver somniferum HOM05D006275 ORTHO05D007839 2.7e-40 169.1 139 59.7
Potri.002G033300 Populus trichocarpa HOM05D006275 ORTHO05D007839 2.7e-40 169.1 132 62.1
Gohir.D05G195400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 3.5e-40 168.7 136 65.4
PSO764G0160 Papaver somniferum HOM05D006275 ORTHO05D007839 3.5e-40 168.7 139 59.0
PGR031G1371 Punica granatum HOM05D006275 ORTHO05D007839 3.5e-40 168.7 130 63.1
BcaC02g12477 Brassica carinata HOM05D006275 ORTHO05D007839 4.6e-40 168.3 138 61.6
BcaC08g47361 Brassica carinata HOM05D006275 ORTHO05D007839 4.6e-40 168.3 139 61.2
C06p49340 Brassica napus HOM05D006275 ORTHO05D007839 4.6e-40 168.3 139 61.2
BolC4t21983H Brassica oleracea HOM05D006275 ORTHO05D007839 4.6e-40 168.3 138 61.6
BolC6t39969H Brassica oleracea HOM05D006275 ORTHO05D007839 4.6e-40 168.3 139 61.2
Ciclev10002669m.g Citrus clementina HOM05D006275 ORTHO05D007839 6.0e-40 167.9 134 61.9
Thhalv10019294m.g Eutrema salsugineum HOM05D006275 ORTHO05D007839 6.0e-40 167.9 139 59.0
Gorai.009G200300 Gossypium raimondii HOM05D006275 ORTHO05D007839 7.9e-40 167.5 136 63.2
Thecc.08G031000 Theobroma cacao HOM05D006275 ORTHO05D007839 1.0e-39 167.2 136 65.4
TAR628G1199 Trochodendron aralioides HOM05D006275 ORTHO05D007839 1.0e-39 167.2 137 62.0
BcaC08g47007 Brassica carinata HOM05D006275 ORTHO05D007839 1.3e-39 166.8 143 58.7
FvH4_2g39490 Fragaria vesca HOM05D006275 ORTHO05D007839 1.3e-39 166.8 138 61.6
Gohir.A05G192200 Gossypium hirsutum HOM05D006275 ORTHO05D007839 2.3e-39 166.0 136 64.7
TWI36G0893 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 2.3e-39 166.0 132 63.6
Prupe.1G376100 Prunus persica HOM05D006275 ORTHO05D007839 3.0e-39 165.6 139 61.9
AL2G35280 Arabidopsis lyrata HOM05D006275 ORTHO05D007839 8.7e-39 164.1 143 59.4
Carub.0002s2219 Capsella rubella HOM05D006275 ORTHO05D007839 8.7e-39 164.1 146 57.5
COL.COLO4_26271 Corchorus olitorius HOM05D006275 ORTHO05D007839 1.1e-38 163.7 133 63.2
CiPaw.07G158800 Carya illinoinensis HOM05D006275 ORTHO05D007839 1.5e-38 163.3 136 62.5
AT1G75350 Arabidopsis thaliana HOM05D006275 ORTHO05D007839 2.5e-38 162.5 142 57.7
Sp5g30490 Schrenkiella parvula HOM05D006275 ORTHO05D007839 3.3e-38 162.2 142 56.3
CARHR068700 Cardamine hirsuta HOM05D006275 ORTHO05D007839 4.3e-38 161.8 142 58.5
CDE02G2235 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 5.7e-38 161.4 131 61.1
CDE06G0798 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 5.7e-38 161.4 131 60.3
Atru.chr13.432 Acer truncatum HOM05D006275 ORTHO05D007839 1.3e-37 160.2 95 74.7
arahy.Tifrunner.gnm1.ann1.RSD13X Arachis hypogaea HOM05D006275 ORTHO05D007839 1.3e-37 160.2 133 60.9
arahy.Tifrunner.gnm1.ann1.T5GRUU Arachis hypogaea HOM05D006275 ORTHO05D007839 1.3e-37 160.2 133 60.9
Duzib093G0437 Durio zibethinus HOM05D006275 ORTHO05D007839 1.3e-37 160.2 138 62.3
Actinidia37997 Actinidia chinensis HOM05D006275 ORTHO05D007839 2.2e-37 159.5 121 62.0
Aa31LG4G5560 Aethionema arabicum HOM05D006275 ORTHO05D007839 2.8e-37 159.1 139 56.8
Sabra02G0026900 Salix brachista HOM05D006275 ORTHO05D007839 2.8e-37 159.1 107 67.3
Phvul.001G012400 Phaseolus vulgaris HOM05D006275 ORTHO05D007839 6.3e-37 157.9 133 63.2
arahy.Tifrunner.gnm1.ann1.W9L06J Arachis hypogaea HOM05D006275 ORTHO05D007839 8.2e-37 157.5 123 61.0
arahy.Tifrunner.gnm1.ann1.WR55YC Arachis hypogaea HOM05D006275 ORTHO05D007839 8.2e-37 157.5 123 61.0
Lalb_Chr22g0354641 Lupinus albus HOM05D006275 ORTHO05D007839 8.2e-37 157.5 125 63.2
ATR0568G031 Amborella trichopoda HOM05D006275 ORTHO05D007839 1.4e-36 156.8 128 60.9
MD15G1023800 Malus domestica HOM05D006275 ORTHO05D007839 2.4e-36 156.0 140 57.9
Cfa013858 Carpinus fangiana HOM05D006275 ORTHO05D007839 3.1e-36 155.6 101 73.3
Aqoxy5G01584 Aquilegia oxysepala HOM05D006275 ORTHO05D007839 4.1e-36 155.2 135 60.0
Haze_22533 Corylus avellana HOM05D006275 ORTHO05D007839 3.4e-35 152.1 101 72.3
MD08G1027600 Malus domestica HOM05D006275 ORTHO05D007839 4.5e-35 151.8 140 57.9
VMungo0647G0412 Vigna mungo HOM05D006275 ORTHO05D007839 1.0e-34 150.6 133 60.2
Ca_18049_v3 Cicer arietinum L. HOM05D006275 ORTHO05D007839 1.3e-34 150.2 137 58.4
HPP92_009679 Vanilla planifolia HOM05D006275 ORTHO05D007839 5.0e-34 148.3 103 61.2
Medtr1g022450 Medicago truncatula HOM05D006275 ORTHO05D007839 1.4e-33 146.7 126 57.1
Pp3c4_22510 Physcomitrium patens HOM05D006275 ORTHO05D007839 3.2e-33 145.6 140 53.6
Rhsim07G0241500 Rhododendron simsii HOM05D006275 ORTHO05D007839 3.2e-33 145.6 141 56.0
RhsimUnG0236400 Rhododendron simsii HOM05D006275 ORTHO05D007839 3.2e-33 145.6 141 56.0
Glyma.14G072400 Glycine max HOM05D006275 ORTHO05D007839 4.2e-33 145.2 134 57.5
Glyma.17G252600 Glycine max HOM05D006275 ORTHO05D007839 4.6e-32 141.7 99 68.7
Psat6g009240 Pisum sativum HOM05D006275 ORTHO05D007839 1.0e-31 140.6 136 55.1
Lj5g0023115 Lotus japonicus HOM05D006275 ORTHO05D007839 1.4e-31 140.2 136 55.9
vmacro04538 Vaccinium macrocarpon HOM05D006275 ORTHO05D007839 3.0e-31 139.0 96 66.7
Pp3c13_7030 Physcomitrium patens HOM05D006275 ORTHO05D007839 3.9e-31 138.7 108 55.6
Pp3c3_430 Physcomitrium patens HOM05D006275 ORTHO05D007839 6.7e-31 137.9 145 49.0
FAN20G1429 Fragaria x ananassa HOM05D006275 ORTHO05D007839 2.5e-30 136.0 111 60.4
TPR.G20152 Trifolium pratense HOM05D006275 ORTHO05D007839 7.4e-30 134.4 126 53.2
Mapoly0051s0056 Marchantia polymorpha HOM05D006275 ORTHO05D007839 1.8e-28 129.8 104 55.8
CBR_g52135 Chara braunii HOM05D006275 ORTHO05D007839 3.4e-27 125.6 111 54.1
AagrBONN_evm.TU.Sc2ySwM_368.2624 Anthoceros agrestis HOM05D006275 ORTHO05D007839 2.9e-26 122.5 99 59.6
SMO117G0016 Selaginella moellendorffii HOM05D006275 ORTHO05D007839 3.8e-26 122.1 96 57.3
SEGI_04934 Sequoiadendron giganteum HOM05D006275 ORTHO05D007839 4.2e-25 118.6 122 47.5
Os01g0633000 Oryza sativa ssp. japonica HOM05D006275 ORTHO05D007839 6.1e-24 114.8 106 51.9
Zm00001eb159080 Zea mays HOM05D006275 ORTHO05D007839 6.7e-23 111.3 106 51.9
QL02p009087 Quercus lobata HOM05D006275 ORTHO05D007839 8.2e-21 104.4 71 69.0
Duzib041G0262 Durio zibethinus HOM05D006275 ORTHO05D007839 1.4e-20 103.6 76 69.7
Cre08.g365400 Chlamydomonas reinhardtii HOM05D006275 ORTHO05D007839 3.1e-20 102.4 90 51.1
BcaC09g48250 Brassica carinata HOM05D006275 ORTHO05D007839 8.5e-18 94.4 65 64.6
MCO12G376 Micromonas commoda HOM05D006275 ORTHO05D007839 1.9e-17 93.2 88 43.2
TWI56G0783 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 1.1e-14 84.0 58 70.7
Gohir.D12G058400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 1.5e-14 83.6 74 56.8
Gorai.010G176600 Gossypium raimondii HOM05D006275 ORTHO05D007839 6.3e-13 78.2 75 57.3
BcaC05g28396 Brassica carinata HOM05D006275 ORTHO05D003437 4.2e-09 65.5 56 62.5


User provided reference genes

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