Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 6.2e-76 287.3 142 100.0
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 9.9e-74 280.0 142 97.2
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 9.6e-69 263.5 142 91.5
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 1.1e-56 223.4 147 76.2
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 9.7e-37 157.1 153 57.5
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 2.2e-36 156.0 142 59.9
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 1.6e-34 149.8 154 54.5
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 4.5e-34 148.3 142 56.3
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 5.5e-32 141.4 98 73.5
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 3.6e-31 138.7 138 54.3
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 4.7e-31 138.3 151 54.3
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 6.7e-30 134.4 136 52.9
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 8.8e-30 134.0 147 50.3
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 2.6e-29 132.5 124 57.3
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 3.3e-29 132.1 159 50.3
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 4.4e-29 131.7 157 51.0
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 1.3e-28 130.2 140 50.0
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 4.8e-28 128.3 140 53.6
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 1.4e-27 126.7 150 46.0
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 1.4e-27 126.7 152 49.3
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 1.4e-27 126.7 134 49.3
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 1.8e-27 126.3 149 48.3
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 3.1e-27 125.6 153 49.7
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 5.3e-27 124.8 150 49.3
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 9.1e-27 124.0 133 46.6
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 9.1e-27 124.0 149 47.7
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 9.1e-27 124.0 153 45.8
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.6e-26 123.2 140 49.3
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 2.0e-26 122.9 140 50.7
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.7e-26 122.5 139 48.9
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 7.7e-26 120.9 153 44.4
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.3e-25 120.2 152 44.1
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.3e-25 120.2 152 44.1
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 1.3e-25 120.2 90 68.9
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 1.7e-25 119.8 146 49.3
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 1.7e-25 119.8 139 49.6
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 1.7e-25 119.8 135 48.1
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 2.2e-25 119.4 131 48.9
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 2.2e-25 119.4 134 48.5
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 2.9e-25 119.0 146 45.2
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 6.5e-25 117.9 146 47.9
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 6.5e-25 117.9 142 51.4
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 6.5e-25 117.9 150 46.7
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 1.1e-24 117.1 138 46.4
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.1e-24 117.1 133 51.1
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 1.1e-24 117.1 157 46.5
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 1.5e-24 116.7 141 46.1
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 1.5e-24 116.7 138 47.1
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 1.5e-24 116.7 140 47.1
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 1.9e-24 116.3 151 45.0
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.5e-24 115.9 133 50.4
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 2.5e-24 115.9 133 45.9
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 2.5e-24 115.9 136 48.5
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 4.2e-24 115.2 133 50.4
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 4.2e-24 115.2 149 45.0
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 5.5e-24 114.8 127 50.4
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 9.4e-24 114.0 147 46.3
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 1.2e-23 113.6 144 47.9
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 1.6e-23 113.2 151 44.4
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.7e-23 112.5 145 41.4
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.7e-23 112.5 145 41.4
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.7e-23 112.5 127 48.8
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.7e-23 112.5 127 48.8
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 3.6e-23 112.1 135 48.9
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 4.7e-23 111.7 145 41.4
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 6.1e-23 111.3 144 46.5
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 6.1e-23 111.3 130 46.2
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 8.0e-23 110.9 122 53.3
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 8.0e-23 110.9 137 46.0
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 1.0e-22 110.5 130 46.2
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 1.4e-22 110.2 140 44.3
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.8e-22 109.8 139 45.3
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.8e-22 109.8 139 45.3
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 2.3e-22 109.4 136 44.9
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 4.0e-22 108.6 134 44.0
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 4.0e-22 108.6 134 44.0
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 6.8e-22 107.8 140 45.0
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 6.8e-22 107.8 103 56.3
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 8.8e-22 107.5 150 44.7
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 1.2e-21 107.1 115 47.8
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 2.6e-21 105.9 136 44.1
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 2.6e-21 105.9 139 44.6
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 4.4e-21 105.1 148 43.2
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 5.7e-21 104.8 141 41.1
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 7.5e-21 104.4 143 42.7
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 2.2e-20 102.8 127 48.0
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 2.8e-20 102.4 124 45.2
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 4.8e-20 101.7 136 40.4
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 8.3e-20 100.9 118 47.5
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 1.8e-19 99.8 134 42.5
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 3.1e-19 99.0 136 40.4
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 3.1e-19 99.0 124 44.4
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 5.4e-19 98.2 139 40.3
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 7.0e-19 97.8 156 40.4
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 7.0e-19 97.8 137 40.1
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 7.0e-19 97.8 137 43.8
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 9.1e-19 97.4 148 39.9
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 9.1e-19 97.4 127 44.1
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 2.7e-18 95.9 127 44.9
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 2.7e-18 95.9 127 47.2
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 5.9e-18 94.7 127 44.9
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 1.0e-17 94.0 138 39.9
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 1.7e-17 93.2 127 42.5
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 1.7e-17 93.2 127 42.5
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 2.3e-17 92.8 127 42.5
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 2.3e-17 92.8 156 38.5
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 2.9e-17 92.4 127 42.5
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 3.8e-17 92.0 108 47.2
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 5.0e-17 91.7 135 40.7
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 8.6e-17 90.9 127 41.7
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 8.6e-17 90.9 126 44.4
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.5e-16 90.1 125 38.4
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 1.5e-16 90.1 130 40.0
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 2.5e-16 89.4 134 42.5
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 3.3e-16 89.0 139 37.4
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 3.3e-16 89.0 134 37.3
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 3.3e-16 89.0 127 40.2
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 7.2e-16 87.8 136 39.7
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 9.5e-16 87.4 107 48.6
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 1.2e-15 87.0 130 39.2
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 2.1e-15 86.3 107 40.2
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 2.8e-15 85.9 132 38.6
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 2.8e-15 85.9 145 35.9
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 4.7e-15 85.1 128 41.4
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 6.1e-15 84.7 149 35.6
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 1.4e-14 83.6 132 41.7
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.4e-14 83.6 159 36.5
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.3e-14 82.8 118 43.2
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 4.0e-14 82.0 94 46.8
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 4.0e-14 82.0 145 36.6
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 4.0e-14 82.0 151 36.4
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 6.8e-14 81.3 135 37.0
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 6.8e-14 81.3 128 37.5
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 3.4e-13 79.0 159 35.2
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 3.4e-13 79.0 161 34.8
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 3.4e-13 79.0 124 38.7
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 7.5e-13 77.8 136 35.3
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 9.8e-13 77.4 124 37.1
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 1.7e-12 76.6 145 36.6
PGSC0003DMG400005376 Solanum tuberosum HOM05D004108 ORTHO05D004849 2.8e-12 75.9 122 41.0
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 1.4e-11 73.6 102 48.0
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 1.4e-11 73.6 102 48.0
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 1.8e-11 73.2 126 38.1
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 2.4e-11 72.8 69 55.1
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.1e-11 72.4 129 34.1
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 3.1e-11 72.4 148 35.1
Nitab4.5_0004768g0030 Nicotiana tabacum HOM05D004108 ORTHO05D004849 5.4e-11 71.6 99 45.5
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 5.4e-11 71.6 128 36.7
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 5.4e-11 71.6 135 36.3
Actinidia30825 Actinidia chinensis HOM05D004108 ORTHO05D004849 7.0e-11 71.2 55 63.6
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 7.0e-11 71.2 101 41.6
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.2e-10 70.5 138 34.8
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.6e-10 70.1 61 55.7
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 1.6e-10 70.1 125 35.2
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 5.9e-10 68.2 112 41.1
unitig_747.g21673 Utricularia gibba HOM05D004108 ORTHO05D004849 7.8e-10 67.8 127 34.6
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.3e-09 66.2 138 30.4
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 6.6e-09 64.7 67 53.7
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 8.6e-09 64.3 88 45.5
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.1e-08 63.9 156 28.2
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.5e-08 63.5 140 30.0
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.9e-08 63.2 116 30.2
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.9e-08 63.2 132 32.6
Actinidia29817 Actinidia chinensis HOM05D004108 ORTHO05D004849 5.6e-08 61.6 39 69.2
CANSAT01G1253 Cannabis sativa HOM05D003374 ORTHO05D009470 1.2e-07 60.5 121 32.2
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.2e-07 60.5 125 31.2
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.0e-06 57.4 138 32.6
FAN23G1041 Fragaria x ananassa HOM05D003374 ORTHO05D009470 3.0e-06 55.8 102 30.4
FAN28G2426 Fragaria x ananassa HOM05D003374 ORTHO05D009470 3.0e-06 55.8 102 30.4
FAN26G1101 Fragaria x ananassa HOM05D003374 ORTHO05D009470 6.8e-06 54.7 102 30.4
FvH4_1g11080 Fragaria vesca HOM05D003374 ORTHO05D009470 8.9e-06 54.3 102 30.4


User provided reference genes

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