Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 1.9e-291 1005.4 614 100.0
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 1.7e-255 885.9 614 90.4
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 1.3e-183 647.1 649 65.2
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.3e-127 460.3 532 57.5
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 1.7e-122 444.1 479 58.9
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 2.3e-95 354.0 513 49.1
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 9.6e-81 305.4 419 48.7
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 1.1e-65 255.4 651 35.6
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.5e-65 254.2 427 43.8
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.3e-64 251.9 427 44.3
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 4.3e-57 226.9 434 39.4
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 5.6e-57 226.5 187 56.7
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 4.5e-54 216.9 243 44.4
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 5.8e-54 216.5 472 38.8
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 5.5e-52 209.9 220 46.4
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 6.0e-51 206.5 424 36.8
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 6.7e-50 203.0 355 36.9
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 1.1e-49 202.2 400 35.5
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 3.3e-49 200.7 444 36.7
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 4.3e-49 200.3 472 33.3
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 2.1e-48 198.0 443 35.0
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 2.1e-48 198.0 212 45.8
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 2.4e-47 194.5 271 42.4
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 6.9e-47 193.0 379 37.2
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 2.6e-46 191.0 375 35.7
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 2.6e-46 191.0 295 40.7
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 1.0e-45 189.1 467 34.0
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.0e-45 189.1 275 37.5
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 1.3e-45 188.7 525 32.4
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 3.8e-45 187.2 500 33.6
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 3.8e-45 187.2 386 36.0
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 1.9e-44 184.9 363 32.8
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 3.2e-44 184.1 422 34.6
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 4.2e-44 183.7 399 33.8
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 7.2e-44 183.0 387 35.4
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 6.1e-43 179.9 361 35.7
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 6.1e-43 179.9 483 30.4
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 1.3e-42 178.7 409 34.2
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 1.3e-42 178.7 409 34.2
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 1.5e-41 175.3 462 32.9
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 4.3e-41 173.7 203 46.8
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 9.7e-41 172.6 413 32.4
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 2.8e-40 171.0 431 33.2
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 2.8e-40 171.0 408 31.9
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 8.2e-40 169.5 461 32.3
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 3.1e-39 167.5 466 31.3
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 6.9e-39 166.4 459 31.4
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 1.2e-38 165.6 465 32.3
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 1.2e-35 155.6 373 31.9
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 3.6e-35 154.1 215 40.5
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 3.6e-35 154.1 398 31.2
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 7.9e-35 152.9 198 42.4
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 7.9e-35 152.9 129 62.0
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 7.9e-35 152.9 500 31.8
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 6.7e-34 149.8 224 37.5
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.5e-33 148.7 383 30.3
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 2.0e-33 148.3 256 36.7
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 2.5e-33 147.9 471 29.7
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 4.3e-33 147.1 383 30.0
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 1.3e-32 145.6 241 37.8
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 6.3e-32 143.3 278 32.0
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 8.2e-32 142.9 498 26.9
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 2.4e-31 141.4 219 40.6
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 4.1e-31 140.6 258 34.9
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 5.3e-31 140.2 412 29.6
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 3.4e-30 137.5 374 30.5
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 7.7e-30 136.3 232 35.3
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 2.9e-29 134.4 466 28.1
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 5.0e-29 133.7 190 42.6
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 6.5e-29 133.3 465 28.6
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 8.5e-29 132.9 475 29.3
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 1.1e-28 132.5 407 29.5
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 1.4e-28 132.1 225 38.2
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 1.9e-28 131.7 228 37.7
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 2.5e-28 131.3 227 37.0
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 3.2e-28 131.0 211 39.3
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 3.2e-28 131.0 225 39.1
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 7.2e-28 129.8 247 36.0
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 7.2e-28 129.8 310 31.6
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 1.6e-27 128.6 274 33.9
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 4.7e-27 127.1 247 34.4
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 7.9e-27 126.3 247 34.8
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 7.9e-27 126.3 683 27.8
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 3.9e-26 124.0 216 37.0
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 5.1e-26 123.6 421 30.4
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 5.1e-26 123.6 199 35.7
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 6.7e-26 123.2 389 28.5
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 2.0e-25 121.7 286 30.8
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 3.3e-25 120.9 288 32.6
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 7.4e-25 119.8 195 36.4
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 9.7e-25 119.4 217 34.1
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 1.3e-24 119.0 221 36.7
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 1.3e-24 119.0 196 40.8
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 4.8e-24 117.1 210 36.2
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 6.3e-24 116.7 169 42.0
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.8e-23 115.2 388 28.1
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 4.1e-23 114.0 489 26.4
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 4.1e-23 114.0 208 34.6
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 5.3e-23 113.6 408 29.2
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 1.2e-22 112.5 446 27.6
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 1.6e-22 112.1 374 28.1
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 1.0e-21 109.4 221 32.6
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 1.0e-21 109.4 351 29.1
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 2.2e-21 108.2 234 33.3
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 3.8e-21 107.5 346 27.2
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 5.0e-21 107.1 274 28.8
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 8.5e-21 106.3 426 27.7
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 1.6e-19 102.1 422 27.7
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 4.7e-19 100.5 287 28.6
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 4.7e-19 100.5 405 28.4
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 8.0e-19 99.8 287 28.2
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 8.0e-19 99.8 241 31.1
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 1.8e-18 98.6 473 26.8
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 1.1e-17 95.9 448 25.9
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 1.3e-16 92.4 416 26.4
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 6.3e-16 90.1 263 27.8
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 9.1e-15 86.3 430 25.3
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.6e-14 85.5 201 31.3
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.7e-13 82.0 292 27.4
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 6.5e-13 80.1 292 27.4
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 5.5e-12 77.0 140 38.6
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 2.7e-11 74.7 372 23.9
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 6.1e-11 73.6 111 40.5
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 1.3e-08 65.9 158 31.0
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 2.2e-08 65.1 109 35.8
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.8e-08 64.7 109 32.1
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 4.8e-08 63.9 108 34.3
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 4.8e-08 63.9 139 33.1
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 4.8e-08 63.9 218 27.1
Nitab4.5_0000307g0130 Nicotiana tabacum HOM05D019980 ORTHO05D022204 6.3e-08 63.5 132 32.6
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 8.3e-08 63.2 113 36.3
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 1.1e-07 62.8 122 33.6
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.4e-07 62.4 139 32.4
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.4e-07 62.4 139 32.4
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 1.8e-07 62.0 102 32.4
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 2.4e-07 61.6 108 35.2
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 2.4e-07 61.6 114 32.5
DCAR_019537 Daucus carota HOM05D006278 ORTHO05D007526 2.4e-07 61.6 436 25.5
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 2.4e-07 61.6 125 31.2
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 2.4e-07 61.6 118 33.9
Nitab4.5_0002527g0010 Nicotiana tabacum HOM05D019980 ORTHO05D022204 3.1e-07 61.2 144 29.9
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 3.1e-07 61.2 117 31.6
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 4.1e-07 60.8 135 31.9
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 4.1e-07 60.8 119 29.4
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 4.1e-07 60.8 175 28.0
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 5.4e-07 60.5 300 27.7
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 7.0e-07 60.1 119 34.5
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 7.0e-07 60.1 119 34.5
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 9.1e-07 59.7 110 31.8
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 9.1e-07 59.7 127 33.9
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 9.1e-07 59.7 111 31.5
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 1.6e-06 58.9 125 32.0
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 2.0e-06 58.5 116 33.6
PGSC0003DMG400046434 Solanum tuberosum HOM05D019980 ORTHO05D022204 2.0e-06 58.5 121 32.2
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 2.7e-06 58.2 108 33.3
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 4.5e-06 57.4 109 33.0
CsaV3_3G007810 Cucumis sativus L. HOM05D030996 ORTHO05D004349 5.9e-06 57.0 132 31.1
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 5.9e-06 57.0 108 34.3
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 5.9e-06 57.0 246 24.8
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 5.9e-06 57.0 128 30.5
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 5.9e-06 57.0 113 29.2
CAN.G1415.1 Capsicum annuum HOM05D019980 ORTHO05D022204 7.7e-06 56.6 142 30.3
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 7.7e-06 56.6 191 25.7
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 7.7e-06 56.6 109 31.2


User provided reference genes

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