Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 1.4e-145 519.6 276 100.0
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 7.4e-142 507.3 275 98.2
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.3e-138 496.5 275 96.0
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 5.2e-111 404.8 271 82.7
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.8e-103 379.8 257 81.3
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.0e-102 376.3 257 80.9
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.1e-97 360.5 257 78.2
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 1.1e-95 354.0 249 78.7
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 7.4e-65 251.5 258 58.9
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 9.6e-65 251.1 259 60.6
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 2.2e-61 240.0 249 55.0
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 7.9e-59 231.5 254 57.1
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 3.0e-58 229.6 257 58.4
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 1.1e-57 227.6 208 61.5
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 1.5e-57 227.3 249 52.6
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 4.3e-57 225.7 250 57.2
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 4.3e-57 225.7 255 54.9
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 2.1e-56 223.4 254 56.7
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 4.8e-56 222.2 251 55.4
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 1.1e-55 221.1 249 57.8
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.4e-55 220.7 247 52.6
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 3.1e-55 219.5 175 66.3
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.0e-55 219.2 251 52.2
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 5.3e-55 218.8 264 53.4
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 9.0e-55 218.0 251 51.8
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 2.6e-54 216.5 251 53.8
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 2.6e-54 216.5 247 53.0
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 3.4e-54 216.1 245 55.9
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 5.8e-54 215.3 247 54.3
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 7.6e-54 214.9 253 52.6
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 7.6e-54 214.9 253 52.2
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.0e-53 214.5 246 51.6
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 1.3e-53 214.2 244 53.3
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 2.2e-53 213.4 253 52.6
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 3.8e-53 212.6 247 54.3
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 3.8e-53 212.6 250 53.6
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 1.4e-52 210.7 262 51.9
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 1.9e-52 210.3 243 53.1
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 1.9e-52 210.3 243 53.1
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 3.2e-52 209.5 269 49.8
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 3.2e-52 209.5 239 55.6
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 3.2e-52 209.5 245 51.0
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 7.1e-52 208.4 253 52.2
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 9.3e-52 208.0 244 51.6
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 1.6e-51 207.2 220 55.9
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 6.0e-51 205.3 277 49.1
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 1.0e-50 204.5 248 50.4
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 1.3e-50 204.1 244 52.0
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.8e-50 203.8 245 52.2
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 5.1e-50 202.2 275 50.5
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 6.7e-50 201.8 244 51.2
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.1e-49 201.1 250 50.4
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 1.1e-49 201.1 253 52.2
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.5e-49 200.7 244 52.0
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 3.3e-49 199.5 260 51.5
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 4.3e-49 199.1 238 54.2
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 7.4e-49 198.4 253 51.0
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 1.3e-48 197.6 247 49.8
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.3e-48 197.6 253 51.4
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.3e-48 197.6 246 49.2
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 1.3e-48 197.6 243 49.8
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 2.8e-48 196.4 250 50.4
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 6.3e-48 195.3 245 49.0
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 8.2e-48 194.9 248 51.6
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 8.2e-48 194.9 258 51.6
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 8.2e-48 194.9 263 50.6
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.8e-47 193.7 248 46.8
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 1.8e-47 193.7 170 64.7
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 2.4e-47 193.4 262 50.0
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.1e-47 193.0 220 53.2
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 5.3e-47 192.2 247 50.2
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 1.5e-46 190.7 244 52.9
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 1.5e-46 190.7 250 50.0
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 7.7e-46 188.3 191 62.3
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 1.3e-45 187.6 258 49.2
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.3e-45 187.6 291 45.0
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 1.7e-45 187.2 261 46.4
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 2.9e-45 186.4 250 48.8
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 2.9e-45 186.4 161 56.5
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 3.8e-45 186.0 244 46.3
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 8.5e-45 184.9 254 48.8
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 1.4e-44 184.1 251 49.4
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 1.9e-44 183.7 261 47.9
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 1.9e-44 183.7 163 58.3
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 5.5e-44 182.2 246 52.8
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 7.2e-44 181.8 270 46.7
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 9.4e-44 181.4 250 48.8
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 9.4e-44 181.4 246 50.0
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 1.2e-43 181.0 262 43.5
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 1.6e-43 180.6 265 46.0
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.6e-43 180.6 253 49.4
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 2.1e-43 180.3 240 47.9
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 2.7e-43 179.9 262 45.0
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 3.6e-43 179.5 252 47.6
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 3.6e-43 179.5 160 58.8
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 6.1e-43 178.7 249 48.6
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 6.1e-43 178.7 266 48.9
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 1.0e-42 177.9 305 41.6
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 1.0e-42 177.9 260 46.5
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.3e-42 176.8 263 48.7
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 3.9e-42 176.0 267 46.1
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 5.1e-42 175.6 256 46.5
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 6.7e-42 175.3 248 46.4
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 6.7e-42 175.3 263 48.7
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 8.8e-42 174.9 257 46.3
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 8.8e-42 174.9 257 46.3
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 1.1e-41 174.5 253 49.0
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 2.0e-41 173.7 250 50.0
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 2.5e-41 173.3 180 52.8
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 3.3e-41 172.9 152 61.2
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 3.3e-41 172.9 241 48.5
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 5.7e-41 172.2 244 47.5
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 7.4e-41 171.8 164 51.8
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 7.4e-41 171.8 371 38.8
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 1.3e-40 171.0 257 45.5
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 1.3e-40 171.0 256 46.1
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 2.2e-40 170.2 257 46.3
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 1.1e-39 167.9 271 48.0
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 1.5e-38 164.1 266 45.1
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.7e-37 160.6 370 37.0
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.1e-36 157.9 251 42.6
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 1.4e-36 157.5 167 52.7
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 5.5e-36 155.6 233 42.9
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 1.4e-34 151.0 257 44.0
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 2.3e-34 150.2 146 58.9
PGSC0003DMG400032808 Solanum tuberosum HOM05D004579 ORTHO05D005376 6.5e-29 132.1 89 78.7
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.5e-28 130.2 67 95.5
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 3.2e-28 129.8 292 35.6
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 5.5e-28 129.0 246 42.7
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 3.6e-27 126.3 127 55.9
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 6.7e-26 122.1 221 38.5
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 3.3e-25 119.8 235 36.6
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 7.0e-23 112.1 142 48.6
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 3.8e-21 106.3 144 46.5
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 5.0e-21 105.9 249 37.3
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 1.8e-18 97.4 214 32.7
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 6.7e-18 95.5 133 45.1
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 2.0e-17 94.0 177 33.3
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 7.5e-17 92.0 124 57.3
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 1.4e-15 87.8 198 35.4
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 5.3e-15 85.9 154 38.3
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 3.5e-14 83.2 98 46.9
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 3.8e-13 79.7 130 49.2
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 6.1e-11 72.4 111 48.6
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 2.2e-08 63.9 49 59.2
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 2.2e-08 63.9 49 59.2
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.8e-07 60.8 54 55.6
Actinidia18194 Actinidia chinensis HOM05D004579 ORTHO05D005376 4.5e-06 56.2 65 52.3


User provided reference genes

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