Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g080200.4 Solanum lycopersicum HOM05D005945 ORTHO05D006749 0.0e+00 1293.1 670 100.0
Sopen04g033790 Solanum pennellii HOM05D005945 ORTHO05D006749 0.0e+00 1253.0 708 93.1
PGSC0003DMG400005162 Solanum tuberosum HOM05D005945 ORTHO05D006749 0.0e+00 1146.3 752 83.1
Nitab4.5_0000110g0520 Nicotiana tabacum HOM05D005945 ORTHO05D006749 9.3e-239 830.5 694 67.7
Nitab4.5_0003783g0040 Nicotiana tabacum HOM05D005945 ORTHO05D006749 1.4e-234 816.6 695 67.6
Peaxi162Scf00690g00118 Petunia axillaris HOM05D005945 ORTHO05D006749 9.4e-215 750.7 708 63.6
Dinv39407 Davidia involucrata HOM05D005945 ORTHO05D006749 7.0e-93 345.9 696 37.4
Oeu056183.1 Olea europaea HOM05D005945 ORTHO05D006749 5.5e-90 336.3 637 39.2
Cc10_g03040 Coffea canephora HOM05D005945 ORTHO05D006749 1.8e-88 331.3 704 38.2
Actinidia15315 Actinidia chinensis HOM05D005945 ORTHO05D006749 2.0e-84 317.8 708 34.3
CSS0038834 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 3.2e-82 310.5 715 35.0
CSS0001698 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 6.1e-81 306.2 715 34.8
Oeu036192.1 Olea europaea HOM05D005945 ORTHO05D006749 4.4e-79 300.1 737 36.0
Migut.C00710 Erythranthe guttata HOM05D005945 ORTHO05D006749 3.1e-77 293.9 710 35.9
MSTRG.25161 Avicennia marina HOM05D005945 ORTHO05D006749 1.7e-75 288.1 711 35.4
SGA_v2.0_scaffold326G48709 Striga asiatica HOM05D005945 ORTHO05D006749 1.2e-68 265.4 664 37.2
HanXRQChr04g0105591 Helianthus annuus HOM05D005945 ORTHO05D006749 4.5e-68 263.5 665 33.8
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 4.3e-66 256.9 638 35.3
ECA247G0868 Erigeron canadensis HOM05D005945 ORTHO05D006749 1.8e-64 251.5 262 54.2
Haze_17984 Corylus avellana HOM05D005945 ORTHO05D006749 5.7e-63 246.5 671 33.1
TAR376G0838 Trochodendron aralioides HOM05D005945 ORTHO05D006749 3.2e-61 240.7 705 32.2
DCAR_008766 Daucus carota HOM05D005945 ORTHO05D006749 1.0e-59 235.7 720 31.4
GSVIVG01009690001 Vitis vinifera HOM05D005945 ORTHO05D006749 5.0e-59 233.4 265 52.5
Lj4A42T73 Lonicera japonica HOM05D005945 ORTHO05D006749 3.3e-58 230.7 235 56.2
Prupe.1G381200 Prunus persica HOM05D005945 ORTHO05D006749 3.6e-57 227.3 690 32.5
HanXRQChr04g0105581 Helianthus annuus HOM05D005945 ORTHO05D006749 4.7e-57 226.9 306 47.7
Cfa018140 Carpinus fangiana HOM05D005945 ORTHO05D006749 2.0e-55 221.5 739 30.3
RcHm_v2.0_Chr6g0300761 Rosa chinensis HOM05D005945 ORTHO05D006749 2.2e-54 218.0 684 32.0
Rhsim06G0034700 Rhododendron simsii HOM05D005945 ORTHO05D006749 2.9e-54 217.6 705 31.2
Potri.014G181200 Populus trichocarpa HOM05D005945 ORTHO05D006749 4.1e-53 213.8 515 33.8
Thecc.08G024700 Theobroma cacao HOM05D005945 ORTHO05D006749 6.0e-52 209.9 793 29.1
COL.COLO4_26338 Corchorus olitorius HOM05D005945 ORTHO05D006749 2.3e-51 208.0 308 45.1
Dinv36067 Davidia involucrata HOM05D005945 ORTHO05D006749 6.6e-51 206.5 258 48.8
Gorai.010G010800 Gossypium raimondii HOM05D005945 ORTHO05D006749 2.8e-49 201.1 767 31.3
Sc15g0006890 Simmondsia chinensis HOM05D005945 ORTHO05D006749 1.1e-48 199.1 713 28.9
Gohir.A06G010700 Gossypium hirsutum HOM05D005945 ORTHO05D006749 1.4e-48 198.7 751 30.9
Gohir.D06G008100 Gossypium hirsutum HOM05D005945 ORTHO05D006749 1.8e-48 198.4 772 31.1
CANSAT25G3494 Cannabis sativa HOM05D005945 ORTHO05D006749 2.3e-48 198.0 480 32.1
FvH4_2g39990 Fragaria vesca HOM05D005945 ORTHO05D006749 5.2e-48 196.8 677 30.0
Manes.18G028200 Manihot esculenta HOM05D005945 ORTHO05D006749 1.2e-47 195.7 707 30.3
FAN27G1966 Fragaria x ananassa HOM05D005945 ORTHO05D006749 2.0e-47 194.9 679 30.2
TAR628G0886 Trochodendron aralioides HOM05D005945 ORTHO05D006749 4.4e-47 193.7 279 43.0
FAN15G0837 Fragaria x ananassa HOM05D005945 ORTHO05D006749 2.2e-46 191.4 676 29.1
MD08G1033800 Malus domestica HOM05D005945 ORTHO05D006749 2.9e-46 191.0 360 37.8
Nn5g29549 Nelumbo nucifera HOM05D005945 ORTHO05D006749 3.7e-46 190.7 838 28.0
Hund26580 Selenicereus undatus HOM05D005945 ORTHO05D006749 6.4e-46 189.9 739 28.0
Sabra14G0141200 Salix brachista HOM05D005945 ORTHO05D006749 8.3e-46 189.5 371 38.8
Cpa.g.sc64.76 Carica papaya HOM05D005945 ORTHO05D006749 1.1e-45 189.1 375 37.1
QL02p007988 Quercus lobata HOM05D005945 ORTHO05D006749 2.4e-45 188.0 853 26.4
FAN20G0334 Fragaria x ananassa HOM05D005945 ORTHO05D006749 3.2e-45 187.6 676 29.1
Duzib093G2051 Durio zibethinus HOM05D005945 ORTHO05D006749 5.4e-45 186.8 319 42.9
TWI12G1232 Tripterygium wilfordii HOM05D005945 ORTHO05D006749 7.8e-44 183.0 667 29.8
Manes.05G161400 Manihot esculenta HOM05D005945 ORTHO05D006749 1.7e-43 181.8 750 29.9
Eucgr.F01555 Eucalyptus grandis HOM05D005945 ORTHO05D006749 3.0e-43 181.0 702 30.2
MD15G1030400 Malus domestica HOM05D005945 ORTHO05D006749 3.0e-43 181.0 615 29.9
Glyma.03G071500 Glycine max HOM05D005945 ORTHO05D006749 6.6e-43 179.9 305 40.7
Medtr4g019490 Medicago truncatula HOM05D005945 ORTHO05D006749 8.6e-43 179.5 266 43.2
CiPaw.15G076000 Carya illinoinensis HOM05D005945 ORTHO05D006749 1.9e-42 178.3 413 35.6
arahy.Tifrunner.gnm1.ann1.Q0ZVI3 Arachis hypogaea HOM05D005945 ORTHO05D006749 5.6e-42 176.8 738 28.6
Ca_03064_v3 Cicer arietinum L. HOM05D005945 ORTHO05D006749 3.6e-41 174.1 274 42.3
TAR628G0416 Trochodendron aralioides HOM05D005945 ORTHO05D006749 3.6e-41 174.1 193 51.3
Psat7g242000 Pisum sativum HOM05D005945 ORTHO05D006749 3.1e-40 171.0 267 43.1
PGR031G1506 Punica granatum HOM05D005945 ORTHO05D006749 1.2e-39 169.1 645 29.8
Atru.chr13.502 Acer truncatum HOM05D005945 ORTHO05D006749 1.5e-39 168.7 247 43.7
Glyma.01G104600 Glycine max HOM05D005945 ORTHO05D006749 3.4e-39 167.5 306 36.9
Phvul.010G012000 Phaseolus vulgaris HOM05D005945 ORTHO05D006749 3.4e-39 167.5 376 34.6
TPR.G32532 Trifolium pratense HOM05D005945 ORTHO05D006749 7.6e-39 166.4 295 40.7
PSO675G9049 Papaver somniferum HOM05D005945 ORTHO05D006749 6.4e-38 163.3 430 30.7
PSO541G4169 Papaver somniferum HOM05D005945 ORTHO05D006749 1.9e-37 161.8 416 31.2
arahy.Tifrunner.gnm1.ann1.01TKSZ Arachis hypogaea HOM05D005945 ORTHO05D006749 5.4e-37 160.2 764 26.8
Lj3g0003314 Lotus japonicus HOM05D005945 ORTHO05D006749 5.4e-37 160.2 667 27.4
Ah.11g043130 Amaranthus hybridus HOM05D005945 ORTHO05D006749 1.2e-36 159.1 840 26.2
THA.LOC104803244 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 7.8e-36 156.4 350 35.7
VMungo0331G0095 Vigna mungo HOM05D005945 ORTHO05D006749 1.3e-35 155.6 265 39.2
EL10Ac1g01817 Beta vulgaris HOM05D005945 ORTHO05D006749 1.1e-34 152.5 282 36.9
BolC8t50829H Brassica oleracea HOM05D005945 ORTHO05D006749 7.3e-34 149.8 376 33.5
AUR62038825 Chenopodium quinoa HOM05D005945 ORTHO05D006749 1.2e-33 149.1 732 26.1
MBI16_g17464_MAGBIO Magnolia biondii HOM05D005945 ORTHO05D006749 2.8e-33 147.9 484 28.5
Aqoxy4G01586 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 6.2e-33 146.7 256 40.2
ClCG08G015230 Citrullus lanatus HOM05D005945 ORTHO05D006749 1.8e-32 145.2 697 28.3
MELO3C010931.2 Cucumis melo HOM05D005945 ORTHO05D006749 1.8e-32 145.2 746 27.1
AT3G56870 Arabidopsis thaliana HOM05D005945 ORTHO05D006749 2.4e-32 144.8 665 27.5
AL5G38260 Arabidopsis lyrata HOM05D005945 ORTHO05D006749 5.2e-32 143.7 714 25.8
Zm00001eb404680 Zea mays HOM05D005945 ORTHO05D006749 2.0e-31 141.7 271 38.7
Lalb_Chr03g0042671 Lupinus albus HOM05D005945 ORTHO05D006749 3.4e-31 141.0 660 27.4
AUR62043686 Chenopodium quinoa HOM05D005945 ORTHO05D006749 4.4e-31 140.6 782 25.7
Gohir.D02G094500 Gossypium hirsutum HOM05D005945 ORTHO05D006749 5.8e-31 140.2 317 36.3
vmacro21631 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 7.6e-31 139.8 186 45.7
Sed0009733 Sechium edule HOM05D005945 ORTHO05D006749 1.3e-30 139.0 298 36.6
A09p49740 Brassica napus HOM05D005945 ORTHO05D006749 2.2e-30 138.3 680 27.5
BraA09t40427Z Brassica rapa HOM05D005945 ORTHO05D006749 2.2e-30 138.3 680 27.5
BcaC07g39998 Brassica carinata HOM05D005945 ORTHO05D006749 8.4e-30 136.3 657 26.9
BcaC07g40112 Brassica carinata HOM05D005945 ORTHO05D006749 8.4e-30 136.3 376 32.4
C08p32110 Brassica napus HOM05D005945 ORTHO05D006749 8.4e-30 136.3 657 26.9
Gorai.005G107400 Gossypium raimondii HOM05D005945 ORTHO05D006749 1.1e-29 136.0 319 36.1
CsaV3_2G028570 Cucumis sativus L. HOM05D005945 ORTHO05D006749 5.4e-29 133.7 706 26.2
Actinidia22556 Actinidia chinensis HOM05D005945 ORTHO05D006749 7.1e-29 133.3 613 28.4
Aa31LG10G11720 Aethionema arabicum HOM05D005945 ORTHO05D006749 9.3e-29 132.9 704 24.9
Sp5g05720 Schrenkiella parvula HOM05D005945 ORTHO05D006749 9.3e-29 132.9 379 31.1
Zm00001eb021170 Zea mays HOM05D005945 ORTHO05D006749 1.2e-28 132.5 409 31.1
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 1.6e-28 132.1 273 36.3
Thhalv10005811m.g Eutrema salsugineum HOM05D005945 ORTHO05D006749 2.7e-28 131.3 678 26.8
Lj2g0002553 Lotus japonicus HOM05D005945 ORTHO05D006749 2.7e-28 131.3 714 26.9
Carub.0005s2360 Capsella rubella HOM05D005945 ORTHO05D006749 1.3e-27 129.0 661 26.9
Lalb_Chr19g0125071 Lupinus albus HOM05D005945 ORTHO05D006749 1.3e-27 129.0 236 38.1
HPP92_021270 Vanilla planifolia HOM05D005945 ORTHO05D006749 5.6e-26 123.6 262 34.4
Aqoxy4G01559 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 7.3e-26 123.2 221 38.0
ATR0618G067 Amborella trichopoda HOM05D005945 ORTHO05D006749 1.3e-25 122.5 132 52.3
CARHR167020 Cardamine hirsuta HOM05D005945 ORTHO05D006749 1.1e-24 119.4 484 28.1
Sed0010063 Sechium edule HOM05D005945 ORTHO05D006749 1.1e-24 119.4 270 36.7
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 2.0e-23 115.2 148 44.6
Ah.05g167400 Amaranthus hybridus HOM05D005945 ORTHO05D006749 2.6e-23 114.8 232 34.9
Aqoxy6G01057 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 1.3e-22 112.5 270 34.4
TAR381G0602 Trochodendron aralioides HOM05D005945 ORTHO05D006749 9.9e-15 86.3 145 40.0
CDE04G3738 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 1.0e-11 76.3 130 38.5
vmacro21630 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 5.6e-10 70.5 265 30.6
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 1.4e-08 65.9 130 32.3
SEGI_18222 Sequoiadendron giganteum HOM05D007138 ORTHO05D009148 2.6e-07 61.6 120 32.5
HPP92_021280 Vanilla planifolia HOM05D050438 ORTHO05D006749 2.6e-07 61.6 364 25.0
Lj4P42T20 Lonicera japonica HOM05D005945 ORTHO05D006749 8.4e-06 56.6 368 25.8


User provided reference genes

Program Settings