Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 4.3e-173 611.3 321 100.0
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 2.3e-155 552.4 303 97.7
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 2.4e-139 499.2 311 86.2
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 3.9e-126 455.3 284 86.6
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 7.4e-125 451.1 263 87.1
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 1.9e-117 426.4 264 86.0
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 2.2e-108 396.4 302 69.9
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 6.9e-107 391.3 275 72.0
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 2.2e-105 386.3 260 75.0
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 1.2e-103 380.6 270 70.4
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 3.6e-103 379.0 262 71.8
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 4.6e-103 378.6 256 72.3
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 4.6e-103 378.6 256 72.3
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 4.6e-103 378.6 261 71.6
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 2.3e-102 376.3 247 73.7
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 3.0e-102 375.9 282 67.7
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 2.0e-101 373.2 255 71.8
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 3.3e-101 372.5 259 71.8
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 4.3e-101 372.1 310 63.5
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 5.7e-101 371.7 296 64.9
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 4.8e-100 368.6 248 74.2
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 1.1e-99 367.5 264 68.6
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 2.4e-99 366.3 264 69.3
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 9.1e-99 364.4 265 68.3
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 1.2e-98 364.0 278 68.3
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 2.0e-98 363.2 270 68.1
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 2.0e-98 363.2 257 70.0
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 2.6e-98 362.8 300 64.0
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 2.6e-98 362.8 300 63.7
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 3.4e-98 362.5 248 72.2
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 7.7e-98 361.3 258 69.4
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 1.0e-97 360.9 272 67.3
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 1.0e-97 360.9 292 63.7
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 1.7e-97 360.1 311 62.1
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 6.5e-97 358.2 301 63.5
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 6.5e-97 358.2 276 68.5
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 8.5e-97 357.8 305 63.0
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 1.1e-96 357.5 258 68.6
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 1.1e-96 357.5 260 67.3
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 1.1e-96 357.5 253 68.4
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 1.4e-96 357.1 296 62.8
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.9e-96 356.7 300 63.7
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 5.5e-96 355.1 255 70.2
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 7.2e-96 354.8 256 68.0
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 7.2e-96 354.8 255 68.6
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 1.2e-95 354.0 305 65.2
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 6.1e-95 351.7 257 68.1
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 7.9e-95 351.3 258 68.6
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 7.9e-95 351.3 243 70.0
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 3.0e-94 349.4 257 68.5
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 5.1e-94 348.6 257 66.1
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 5.1e-94 348.6 258 66.3
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 6.7e-94 348.2 258 65.9
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 8.8e-94 347.8 252 68.7
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 2.0e-93 346.7 292 66.8
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 1.7e-92 343.6 302 61.6
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 4.8e-92 342.0 226 73.5
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 4.8e-92 342.0 262 63.4
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 4.8e-92 342.0 254 67.7
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 2.4e-91 339.7 261 66.3
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 3.1e-91 339.3 252 67.9
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 3.1e-91 339.3 347 53.3
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 4.1e-91 339.0 252 67.5
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 9.1e-91 337.8 242 69.4
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 9.1e-91 337.8 242 69.4
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 5.9e-90 335.1 260 64.6
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 1.0e-89 334.3 252 64.7
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 1.7e-89 333.6 263 65.8
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 2.2e-89 333.2 260 64.6
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 2.9e-89 332.8 260 64.2
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 5.0e-89 332.0 252 64.3
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 6.5e-89 331.6 240 68.8
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 1.1e-88 330.9 260 63.8
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 1.1e-88 330.9 287 58.9
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 3.2e-88 329.3 318 56.3
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 4.2e-88 328.9 260 63.5
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 5.5e-88 328.6 249 67.9
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 7.2e-88 328.2 229 71.2
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 1.6e-87 327.0 259 62.5
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 4.7e-87 325.5 259 62.9
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 8.0e-87 324.7 255 63.9
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 1.0e-86 324.3 261 62.5
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 8.8e-86 321.2 252 63.5
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 1.1e-85 320.9 274 60.2
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 2.0e-85 320.1 247 64.0
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 4.4e-85 318.9 281 60.1
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 9.7e-85 317.8 257 61.9
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 1.8e-83 313.5 268 62.7
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 9.1e-83 311.2 252 63.9
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 5.9e-82 308.5 258 60.9
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 7.7e-82 308.1 231 66.7
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 1.8e-78 297.0 228 64.5
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 3.4e-77 292.7 347 49.9
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 6.3e-76 288.5 230 61.7
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 5.9e-74 282.0 379 43.5
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 3.8e-73 279.3 187 73.8
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 1.0e-70 271.2 190 70.5
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 3.0e-70 269.6 190 70.5
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 3.4e-69 266.2 252 53.2
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 4.8e-68 262.3 200 64.0
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 8.3e-68 261.5 256 52.0
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 1.4e-67 260.8 258 53.9
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 5.4e-67 258.8 272 53.7
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 9.1e-67 258.1 244 53.3
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 2.5e-64 250.0 255 54.1
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 4.0e-62 242.7 212 59.4
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 4.4e-61 239.2 266 50.4
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 3.5e-58 229.6 262 50.4
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 5.0e-57 225.7 247 49.8
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 1.5e-56 224.2 170 68.8
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 4.7e-55 219.2 273 44.0
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 4.4e-53 212.6 178 64.0
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 7.5e-53 211.8 193 57.5
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 1.4e-51 207.6 149 71.8
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 1.2e-50 204.5 265 45.3
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 2.3e-46 190.3 246 43.9
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 2.2e-44 183.7 146 61.0
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 1.4e-43 181.0 249 41.4
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 2.1e-39 167.2 122 68.0
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 2.2e-36 157.1 207 43.0
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 2.6e-29 133.7 163 46.0
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 2.9e-20 103.6 79 64.6
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 1.5e-16 91.3 83 51.8
PGSC0003DMG400030254 Solanum tuberosum HOM05D000561 ORTHO05D008162 3.5e-10 70.1 36 94.4


User provided reference genes

Program Settings