Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.0e-24 115.9 57 100.0
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.5e-12 75.5 110 42.7
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.5e-12 75.5 110 41.8
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.3e-12 74.3 110 40.9
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 4.3e-12 73.9 110 41.8
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 4.3e-12 73.9 110 41.8
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 4.3e-12 73.9 110 41.8
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 4.3e-12 73.9 110 41.8
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 5.7e-12 73.6 110 41.8
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 5.7e-12 73.6 110 41.8
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 5.7e-12 73.6 110 41.8
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 5.7e-12 73.6 110 41.8
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 5.7e-12 73.6 110 41.8
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 5.7e-12 73.6 110 41.8
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 5.7e-12 73.6 110 41.8
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 5.7e-12 73.6 110 41.8
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 5.7e-12 73.6 110 41.8
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 5.7e-12 73.6 110 41.8
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 7.4e-12 73.2 110 40.9
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 7.4e-12 73.2 110 40.9
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 7.4e-12 73.2 110 40.9
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 9.7e-12 72.8 110 40.9
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 9.7e-12 72.8 110 41.8
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 1.3e-11 72.4 110 40.9
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 1.3e-11 72.4 110 40.9
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 1.3e-11 72.4 110 40.9
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 1.3e-11 72.4 110 40.9
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 1.3e-11 72.4 110 40.9
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 1.3e-11 72.4 110 40.9
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 1.3e-11 72.4 110 40.9
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 1.3e-11 72.4 110 40.9
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 1.7e-11 72.0 110 40.9
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 1.7e-11 72.0 110 41.8
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.7e-11 72.0 110 40.9
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 1.7e-11 72.0 110 40.9
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 2.2e-11 71.6 110 40.9
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 2.2e-11 71.6 110 40.9
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 2.2e-11 71.6 110 41.8
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 2.2e-11 71.6 110 40.0
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 2.2e-11 71.6 110 40.9
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 2.2e-11 71.6 110 40.9
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 2.2e-11 71.6 110 40.9
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 2.8e-11 71.2 110 40.0
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 2.8e-11 71.2 110 40.9
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 2.8e-11 71.2 110 40.9
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 2.8e-11 71.2 110 40.0
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 2.8e-11 71.2 110 41.8
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 2.8e-11 71.2 110 40.9
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 2.8e-11 71.2 110 40.9
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.8e-11 71.2 110 40.9
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 2.8e-11 71.2 110 40.9
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 2.8e-11 71.2 110 40.9
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 2.8e-11 71.2 110 40.0
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 3.7e-11 70.9 110 40.9
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 3.7e-11 70.9 110 39.1
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 4.8e-11 70.5 110 40.9
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 4.8e-11 70.5 110 40.0
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 4.8e-11 70.5 110 40.0
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 4.8e-11 70.5 110 40.9
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 4.8e-11 70.5 110 39.1
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 6.3e-11 70.1 110 40.9
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 6.3e-11 70.1 110 39.1
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 6.3e-11 70.1 110 39.1
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 6.3e-11 70.1 110 40.9
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 6.3e-11 70.1 110 40.0
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 6.3e-11 70.1 110 40.0
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 6.3e-11 70.1 110 40.0
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 8.2e-11 69.7 110 40.0
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 8.2e-11 69.7 109 39.4
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 8.2e-11 69.7 110 40.0
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 8.2e-11 69.7 110 40.0
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 8.2e-11 69.7 110 40.9
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 8.2e-11 69.7 110 40.0
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 8.2e-11 69.7 110 40.0
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 1.1e-10 69.3 106 42.5
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 1.1e-10 69.3 110 40.0
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 1.1e-10 69.3 110 40.0
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.1e-10 69.3 110 39.1
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.1e-10 69.3 106 42.5
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 1.4e-10 68.9 110 39.1
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.4e-10 68.9 110 40.0
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.4e-10 68.9 110 39.1
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 1.8e-10 68.6 110 40.9
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 1.8e-10 68.6 110 40.0
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 2.4e-10 68.2 110 39.1
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 2.4e-10 68.2 110 39.1
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 2.4e-10 68.2 110 39.1
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 2.4e-10 68.2 110 39.1
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 2.4e-10 68.2 110 39.1
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 3.1e-10 67.8 110 40.0
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 3.1e-10 67.8 110 39.1
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 3.1e-10 67.8 110 39.1
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 3.1e-10 67.8 110 40.0
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 4.1e-10 67.4 110 39.1
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 4.1e-10 67.4 110 40.0
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 4.1e-10 67.4 110 38.2
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 5.3e-10 67.0 110 39.1
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.3e-10 67.0 110 40.0
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.3e-10 67.0 110 40.0
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 5.3e-10 67.0 110 38.2
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 5.3e-10 67.0 110 40.9
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 6.9e-10 66.6 110 38.2
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 9.1e-10 66.2 110 40.0
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 9.1e-10 66.2 110 39.1
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 9.1e-10 66.2 110 39.1
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.2e-09 65.9 110 37.3
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 1.2e-09 65.9 110 40.0
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 1.5e-09 65.5 110 39.1
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 1.5e-09 65.5 110 39.1
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 1.5e-09 65.5 110 37.3
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.6e-09 64.7 32 93.8
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 3.4e-09 64.3 110 38.2
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 3.4e-09 64.3 110 36.4
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 5.9e-09 63.5 110 38.2
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 5.9e-09 63.5 110 36.4
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 1.0e-08 62.8 32 90.6
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 1.0e-08 62.8 123 35.0
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 1.0e-08 62.8 32 90.6
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 1.0e-08 62.8 32 90.6
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.3e-08 62.4 109 39.4
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 1.3e-08 62.4 110 36.4
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 1.7e-08 62.0 109 35.8
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 1.7e-08 62.0 32 90.6
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 1.7e-08 62.0 110 37.3
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 2.2e-08 61.6 32 87.5
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 2.2e-08 61.6 110 35.5
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 3.8e-08 60.8 32 87.5
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 3.8e-08 60.8 32 87.5
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 3.8e-08 60.8 109 34.9
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 5.0e-08 60.5 32 84.4
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 5.0e-08 60.5 32 84.4
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 1.9e-07 58.5 32 81.2
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 2.5e-07 58.2 32 81.2
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 2.5e-07 58.2 32 81.2
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 5.5e-07 57.0 110 32.7
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 2.7e-06 54.7 110 31.8
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 6.1e-06 53.5 110 30.9


User provided reference genes

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