Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 2.9e-176 621.7 298 100.0
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 6.1e-150 534.3 256 98.8
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 6.2e-142 507.7 253 94.5
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 3.2e-130 468.8 259 84.6
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 4.1e-130 468.4 257 85.6
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 5.2e-125 451.4 260 84.6
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 2.8e-118 429.1 256 79.3
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 3.3e-103 379.0 258 69.0
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.5e-95 353.6 254 66.5
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 7.4e-95 351.3 277 61.4
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 9.6e-95 350.9 254 66.1
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.6e-94 350.1 255 64.3
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.6e-94 350.1 254 64.6
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 2.4e-93 346.3 252 64.7
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 5.3e-93 345.1 255 65.1
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 6.9e-93 344.7 261 66.3
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 6.9e-93 344.7 270 63.3
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 6.9e-93 344.7 258 64.7
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.0e-91 340.9 260 62.7
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.3e-91 340.5 256 62.1
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 2.2e-91 339.7 254 63.8
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 4.9e-91 338.6 260 64.6
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 6.5e-91 338.2 256 62.1
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 1.1e-90 337.4 250 64.0
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 1.1e-90 337.4 254 65.0
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.5e-90 336.3 256 61.7
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 5.5e-90 335.1 252 65.5
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.6e-89 333.6 258 62.0
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 2.1e-89 333.2 261 61.7
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 6.0e-89 331.6 249 65.5
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 1.0e-88 330.9 260 60.8
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.3e-88 330.5 254 60.6
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 2.3e-88 329.7 256 64.1
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 6.7e-88 328.2 252 64.3
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 1.9e-87 326.6 257 62.3
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 1.9e-87 326.6 254 61.8
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 2.5e-87 326.2 256 61.3
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 4.3e-87 325.5 257 59.9
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 4.8e-86 322.0 255 62.4
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 4.8e-86 322.0 254 60.2
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 4.8e-86 322.0 259 61.8
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 8.2e-86 321.2 251 63.7
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 8.2e-86 321.2 182 80.2
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.1e-85 320.9 256 61.3
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 1.4e-85 320.5 255 60.4
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.8e-85 320.1 248 63.3
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 3.1e-85 319.3 251 61.0
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 4.1e-85 318.9 254 57.9
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 4.1e-85 318.9 253 60.5
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 5.3e-85 318.5 194 75.3
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 6.9e-85 318.2 260 58.5
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 6.9e-85 318.2 264 60.6
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 2.0e-84 316.6 249 61.8
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 2.0e-84 316.6 256 59.0
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.0e-84 316.6 250 62.8
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.0e-84 316.6 250 62.8
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.6e-84 316.2 264 62.5
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 2.6e-84 316.2 272 56.6
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 3.4e-84 315.8 251 60.6
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.5e-84 315.5 260 57.7
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 5.9e-84 315.1 256 62.9
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 7.6e-84 314.7 255 61.2
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 7.6e-84 314.7 250 64.4
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 7.6e-84 314.7 250 64.4
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.0e-83 314.3 241 62.7
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 1.0e-83 314.3 177 79.7
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 2.9e-83 312.8 256 63.7
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 5.0e-83 312.0 257 60.7
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 8.4e-83 311.2 264 61.7
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 8.4e-83 311.2 264 61.7
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 1.4e-82 310.5 258 61.6
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.9e-82 310.1 254 60.2
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.2e-82 309.3 252 63.1
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 4.2e-82 308.9 250 63.6
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 5.5e-82 308.5 260 57.7
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 5.5e-82 308.5 257 58.4
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.2e-81 307.4 257 58.8
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.2e-81 307.4 241 61.8
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.2e-81 307.4 258 59.7
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 1.2e-81 307.4 216 69.9
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 1.6e-81 307.0 250 60.8
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 2.1e-81 306.6 254 61.0
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 2.7e-81 306.2 258 59.3
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.7e-81 306.2 264 61.0
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 6.1e-81 305.1 255 58.0
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 6.1e-81 305.1 244 59.0
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 7.9e-81 304.7 251 60.6
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 7.9e-81 304.7 256 57.8
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 1.0e-80 304.3 255 59.2
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 1.8e-80 303.5 257 57.6
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 2.3e-80 303.1 178 74.2
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 2.3e-80 303.1 258 57.0
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 3.0e-80 302.8 260 58.5
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 3.0e-80 302.8 254 59.4
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 5.1e-80 302.0 251 60.2
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 5.1e-80 302.0 260 57.3
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 8.7e-80 301.2 258 57.0
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 1.1e-79 300.8 255 57.6
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 1.9e-79 300.1 258 58.9
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 2.5e-79 299.7 258 57.0
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 3.3e-79 299.3 256 57.0
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 4.3e-79 298.9 291 53.3
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 9.7e-79 297.7 257 58.0
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 9.7e-79 297.7 259 57.5
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 2.8e-78 296.2 259 56.4
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 3.7e-78 295.8 254 57.5
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 4.8e-78 295.4 256 58.2
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 6.3e-78 295.0 255 57.6
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 8.2e-78 294.7 247 60.3
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 1.1e-77 294.3 252 59.5
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 1.8e-77 293.5 255 56.9
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 5.3e-77 292.0 181 71.8
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 9.0e-77 291.2 185 73.0
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.5e-76 290.4 222 60.4
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 5.0e-75 285.4 253 56.9
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 1.6e-73 280.4 182 69.2
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 1.6e-73 280.4 182 69.2
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 3.0e-72 276.2 260 56.2
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 2.8e-70 269.6 147 83.7
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 1.1e-69 267.7 219 59.8
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 5.3e-69 265.4 173 72.8
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 2.0e-68 263.5 216 60.2
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.0e-68 263.5 260 50.8
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 3.4e-68 262.7 219 60.7
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 7.7e-68 261.5 221 57.0
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 8.5e-67 258.1 150 78.7
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 2.5e-66 256.5 233 54.9
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 1.4e-64 250.8 137 80.3
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 1.5e-63 247.3 181 63.0
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 3.7e-62 242.7 171 63.7
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 4.5e-60 235.7 263 47.9
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 7.7e-60 235.0 219 53.4
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.0e-59 234.6 254 47.2
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.1e-58 231.1 270 47.8
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 4.2e-58 229.2 148 68.9
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 7.2e-58 228.4 187 59.9
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 2.7e-57 226.5 166 59.6
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 1.4e-56 224.2 170 58.2
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.8e-56 223.8 164 61.6
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 8.8e-56 221.5 150 69.3
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 1.1e-55 221.1 164 59.1
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 4.1e-53 212.6 255 47.8
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 9.1e-53 211.5 167 57.5
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 5.7e-47 192.2 116 74.1
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 3.5e-36 156.4 90 75.6
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 7.7e-36 155.2 93 74.2
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 1.4e-32 144.4 143 53.1
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.7e-30 137.5 94 66.0
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 2.2e-30 137.1 84 75.0
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 6.4e-30 135.6 225 39.1
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 5.4e-29 132.5 85 64.7
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 2.5e-26 123.6 78 75.6
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 4.3e-26 122.9 213 30.0
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 8.0e-25 118.6 141 40.4
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 2.6e-23 113.6 63 81.0
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 2.2e-22 110.5 63 76.2
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.9e-22 110.2 73 67.1
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.2e-17 94.7 67 61.2
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.1e-13 81.6 84 45.2
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.6e-12 77.8 52 63.5
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 1.3e-11 74.7 46 69.6
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.7e-11 74.3 105 39.0
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 3.3e-10 70.1 39 76.9
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 4.3e-10 69.7 52 57.7
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 7.3e-10 68.9 51 58.8
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 7.6e-07 58.9 43 60.5
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 1.3e-06 58.2 38 65.8
CDE07G0992 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 2.2e-06 57.4 39 64.1


User provided reference genes

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