Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g078220.3 Solanum lycopersicum HOM05D000702 ORTHO05D392485 1.3e-35 152.5 80 100.0
Sopen04g031840 Solanum pennellii HOM05D000702 ORTHO05D001796 2.8e-25 118.2 63 96.8
PGSC0003DMG400023310 Solanum tuberosum HOM05D000702 ORTHO05D001796 1.1e-24 116.3 63 96.8
Nitab4.5_0003564g0050 Nicotiana tabacum HOM05D000702 ORTHO05D001796 3.4e-23 111.3 63 90.5
Nitab4.5_0000934g0200 Nicotiana tabacum HOM05D000702 ORTHO05D001796 2.2e-22 108.6 63 88.9
CAN.G1054.12 Capsicum annuum HOM05D000702 ORTHO05D001796 1.1e-21 106.3 63 87.3
Peaxi162Scf00081g00064 Petunia axillaris HOM05D000702 ORTHO05D001796 2.7e-20 101.7 70 80.0
Peaxi162Scf00081g00716 Petunia axillaris HOM05D000702 ORTHO05D001796 4.4e-18 94.4 70 75.7
vmacro21463 Vaccinium macrocarpon HOM05D000702 ORTHO05D001796 6.7e-11 70.5 63 61.9
Oeu022064.1 Olea europaea HOM05D000702 ORTHO05D001796 1.1e-10 69.7 55 65.5
Oeu044312.3 Olea europaea HOM05D000702 ORTHO05D001796 1.1e-10 69.7 57 63.2
CSS0004419 Camellia sinensis var. sinensis HOM05D000702 ORTHO05D001796 1.5e-10 69.3 46 71.7
Rhsim06G0058600 Rhododendron simsii HOM05D000702 ORTHO05D001796 1.5e-10 69.3 46 73.9
Atru.chr13.791 Acer truncatum HOM05D000702 ORTHO05D001796 1.7e-09 65.9 47 68.1
Actinidia22671 Actinidia chinensis HOM05D000702 ORTHO05D001796 1.7e-09 65.9 46 69.6
CiPaw.15G046500 Carya illinoinensis HOM05D000702 ORTHO05D001796 2.2e-09 65.5 45 66.7
Dinv44991 Davidia involucrata HOM05D000702 ORTHO05D001796 2.2e-09 65.5 47 70.2
Cpa.g.sc21.126 Carica papaya HOM05D000702 ORTHO05D001796 3.7e-09 64.7 50 58.0
Cfa017884 Carpinus fangiana HOM05D000702 ORTHO05D001796 4.8e-09 64.3 45 66.7
Sc02g0007680 Simmondsia chinensis HOM05D000702 ORTHO05D001796 4.8e-09 64.3 45 68.9
Haze_18282 Corylus avellana HOM05D000702 ORTHO05D001796 6.3e-09 63.9 45 66.7
Duzib093G1780 Durio zibethinus HOM05D000702 ORTHO05D001796 6.3e-09 63.9 47 63.8
Ca_15921_v3 Cicer arietinum L. HOM05D000702 ORTHO05D001796 8.2e-09 63.5 47 66.0
DCAR_020083 Daucus carota HOM05D000702 ORTHO05D001796 8.2e-09 63.5 45 68.9
Oeu022065.2 Olea europaea HOM05D000702 ORTHO05D001796 8.2e-09 63.5 48 68.8
Sc16g0001510 Simmondsia chinensis HOM05D000702 ORTHO05D001796 1.1e-08 63.2 47 63.8
TPR.G25576 Trifolium pratense HOM05D000702 ORTHO05D001796 1.1e-08 63.2 47 66.0
MSTRG.24360 Avicennia marina HOM05D000702 ORTHO05D001796 1.4e-08 62.8 60 60.0
Cc10_g05410 Coffea canephora HOM05D000702 ORTHO05D001796 1.4e-08 62.8 47 66.0
Medtr3g102620 Medicago truncatula HOM05D000702 ORTHO05D001796 1.4e-08 62.8 47 66.0
Cc10_g05440 Coffea canephora HOM05D000702 ORTHO05D001796 1.8e-08 62.4 60 56.7
Lj4A761G89 Lonicera japonica HOM05D000702 ORTHO05D001796 1.8e-08 62.4 46 63.0
SGA_v2.0_scaffold28G11815 Striga asiatica HOM05D000702 ORTHO05D001796 1.8e-08 62.4 57 56.1
Lj3g0018464 Lotus japonicus HOM05D000702 ORTHO05D001796 2.4e-08 62.0 46 63.0
EL10As7g23820 Beta vulgaris HOM05D000702 ORTHO05D001796 4.1e-08 61.2 47 55.3
CAN.G1054.11 Capsicum annuum HOM05D000702 ORTHO05D001796 4.1e-08 61.2 46 60.9
Migut.C00511 Erythranthe guttata HOM05D000702 ORTHO05D001796 4.1e-08 61.2 45 66.7
Gohir.A05G207200 Gossypium hirsutum HOM05D000702 ORTHO05D001796 4.1e-08 61.2 47 63.8
Gohir.D05G210600 Gossypium hirsutum HOM05D000702 ORTHO05D001796 4.1e-08 61.2 47 63.8
Gorai.009G217100 Gossypium raimondii HOM05D000702 ORTHO05D001796 4.1e-08 61.2 47 63.8
arahy.Tifrunner.gnm1.ann1.TDQ3HL Arachis hypogaea HOM05D000702 ORTHO05D001796 5.3e-08 60.8 47 61.7
arahy.Tifrunner.gnm1.ann1.TIU0MY Arachis hypogaea HOM05D000702 ORTHO05D001796 5.3e-08 60.8 47 61.7
Lj1g0010352 Lotus japonicus HOM05D000702 ORTHO05D001796 5.3e-08 60.8 46 65.2
Phvul.009G069700 Phaseolus vulgaris HOM05D000702 ORTHO05D001796 5.3e-08 60.8 47 59.6
Prupe.1G427000 Prunus persica HOM05D000702 ORTHO05D001796 5.3e-08 60.8 46 60.9
Hund24090 Selenicereus undatus HOM05D000702 ORTHO05D001796 5.3e-08 60.8 45 60.0
THA.LOC104812583 Tarenaya hassleriana HOM05D000702 ORTHO05D001796 5.3e-08 60.8 46 60.9
TWI09G1041 Tripterygium wilfordii HOM05D000702 ORTHO05D001796 5.3e-08 60.8 47 63.8
GSVIVG01009387001 Vitis vinifera HOM05D000702 ORTHO05D001796 5.3e-08 60.8 46 60.9
Glyma.04G044000 Glycine max HOM05D000702 ORTHO05D001796 7.0e-08 60.5 47 59.6
RcHm_v2.0_Chr6g0309081 Rosa chinensis HOM05D000702 ORTHO05D001796 7.0e-08 60.5 45 60.0
PGSC0003DMG400021539 Solanum tuberosum HOM05D000702 ORTHO05D001796 7.0e-08 60.5 46 58.7
VMungo1309G0749 Vigna mungo HOM05D000702 ORTHO05D001796 7.0e-08 60.5 47 59.6
BcaB04g17543 Brassica carinata HOM05D000702 ORTHO05D001796 9.1e-08 60.1 46 63.0
BcaC07g37232 Brassica carinata HOM05D000702 ORTHO05D001796 9.1e-08 60.1 46 63.0
BcaC08g42933 Brassica carinata HOM05D000702 ORTHO05D001796 9.1e-08 60.1 46 63.0
A08p05880 Brassica napus HOM05D000702 ORTHO05D001796 9.1e-08 60.1 46 63.0
A10p06560 Brassica napus HOM05D000702 ORTHO05D001796 9.1e-08 60.1 46 63.0
C06p01730 Brassica napus HOM05D000702 ORTHO05D001796 9.1e-08 60.1 46 63.0
C08p06530 Brassica napus HOM05D000702 ORTHO05D001796 9.1e-08 60.1 46 63.0
BolC6t35301H Brassica oleracea HOM05D000702 ORTHO05D001796 9.1e-08 60.1 46 63.0
BraA08t32590Z Brassica rapa HOM05D000702 ORTHO05D001796 9.1e-08 60.1 46 63.0
BraA10t42917Z Brassica rapa HOM05D000702 ORTHO05D001796 9.1e-08 60.1 46 63.0
CSS0044220 Camellia sinensis var. sinensis HOM05D000702 ORTHO05D001796 9.1e-08 60.1 45 62.2
Ciclev10000826m.g Citrus clementina HOM05D000702 ORTHO05D001796 9.1e-08 60.1 47 61.7
Nitab4.5_0003564g0060 Nicotiana tabacum HOM05D000702 ORTHO05D001796 9.1e-08 60.1 46 60.9
TWI36G0259 Tripterygium wilfordii HOM05D000702 ORTHO05D001796 9.1e-08 60.1 46 63.0
Actinidia10176 Actinidia chinensis HOM05D000702 ORTHO05D001796 1.2e-07 59.7 46 65.2
FvH4_2g33450 Fragaria vesca HOM05D000702 ORTHO05D001796 1.2e-07 59.7 45 60.0
FAN24G3163 Fragaria x ananassa HOM05D000702 ORTHO05D001796 1.2e-07 59.7 45 60.0
FAN27G0164 Fragaria x ananassa HOM05D000702 ORTHO05D001796 1.2e-07 59.7 45 60.0
PGR083G2589 Punica granatum HOM05D000702 ORTHO05D001796 1.2e-07 59.7 56 55.4
Glyma.06G044200 Glycine max HOM05D000702 ORTHO05D001796 1.6e-07 59.3 47 57.4
BcaB07g33851 Brassica carinata HOM05D000702 ORTHO05D001796 2.0e-07 58.9 46 63.0
AUR62038780 Chenopodium quinoa HOM05D000702 ORTHO05D001796 2.0e-07 58.9 47 59.6
VMungo0331G1628 Vigna mungo HOM05D000702 ORTHO05D001796 2.0e-07 58.9 46 56.5
AT1G47240 Arabidopsis thaliana HOM05D000702 ORTHO05D001796 2.7e-07 58.5 46 60.9
BolC8t47499H Brassica oleracea HOM05D000702 ORTHO05D001796 2.7e-07 58.5 46 60.9
COL.COLO4_28553 Corchorus olitorius HOM05D000702 ORTHO05D001796 2.7e-07 58.5 47 59.6
FAN20G2703 Fragaria x ananassa HOM05D000702 ORTHO05D001796 2.7e-07 58.5 45 60.0
PGR031G0382 Punica granatum HOM05D000702 ORTHO05D001796 2.7e-07 58.5 45 62.2
PGR031G3938 Punica granatum HOM05D000702 ORTHO05D001796 2.7e-07 58.5 47 59.6
AUR62024545 Chenopodium quinoa HOM05D000702 ORTHO05D001796 3.5e-07 58.2 47 59.6
Sp1g34360 Schrenkiella parvula HOM05D000702 ORTHO05D001796 3.5e-07 58.2 46 60.9
SGA_v2.0_scaffold259G45809 Striga asiatica HOM05D000702 ORTHO05D001796 3.5e-07 58.2 62 50.0
GSVIVG01000173001 Vitis vinifera HOM05D000702 ORTHO05D001796 3.5e-07 58.2 50 58.0
AL1G53380 Arabidopsis lyrata HOM05D000702 ORTHO05D001796 4.5e-07 57.8 46 58.7
Carub.0001s3601 Capsella rubella HOM05D000702 ORTHO05D001796 4.5e-07 57.8 46 60.9
Migut.N02760 Erythranthe guttata HOM05D000702 ORTHO05D001796 4.5e-07 57.8 50 60.0
Peaxi162Scf00081g00618 Petunia axillaris HOM05D000702 ORTHO05D001796 4.5e-07 57.8 45 57.8
QL02p002596 Quercus lobata HOM05D000702 ORTHO05D001796 4.5e-07 57.8 46 60.9
Rhsim08G0096700 Rhododendron simsii HOM05D000702 ORTHO05D001796 4.5e-07 57.8 56 55.4
Sopen04g031850 Solanum pennellii HOM05D000702 ORTHO05D001796 4.5e-07 57.8 46 56.5
FAN15G1111 Fragaria x ananassa HOM05D000702 ORTHO05D001796 5.9e-07 57.4 45 57.8
MD08G1089600 Malus domestica HOM05D000702 ORTHO05D001796 5.9e-07 57.4 47 55.3
SalBow8G2694 Salvia bowleyana HOM05D000702 ORTHO05D001796 5.9e-07 57.4 45 64.4
CiPaw.02G005200 Carya illinoinensis HOM05D000702 ORTHO05D001796 7.7e-07 57.0 50 58.0
MD15G1074200 Malus domestica HOM05D000702 ORTHO05D001796 7.7e-07 57.0 47 55.3
unitig_578.g16134 Utricularia gibba HOM05D000702 ORTHO05D001796 7.7e-07 57.0 46 63.0
Actinidia32814 Actinidia chinensis HOM05D000702 ORTHO05D001796 1.0e-06 56.6 59 54.2
Manes.05G179600 Manihot esculenta HOM05D000702 ORTHO05D001796 1.0e-06 56.6 47 57.4
Potri.002G121000 Populus trichocarpa HOM05D000702 ORTHO05D001796 1.0e-06 56.6 47 55.3
arahy.Tifrunner.gnm1.ann1.79RMIA Arachis hypogaea HOM05D000702 ORTHO05D001796 1.3e-06 56.2 45 57.8
arahy.Tifrunner.gnm1.ann1.RY8NQV Arachis hypogaea HOM05D000702 ORTHO05D001796 1.3e-06 56.2 45 57.8
CARHR036780 Cardamine hirsuta HOM05D000702 ORTHO05D001796 1.3e-06 56.2 46 56.5
CiPaw.01G009000 Carya illinoinensis HOM05D000702 ORTHO05D001796 1.3e-06 56.2 47 61.7
Glyma.01G190700 Glycine max HOM05D000702 ORTHO05D001796 1.3e-06 56.2 47 61.7
SalBow6G0852 Salvia bowleyana HOM05D000702 ORTHO05D001796 1.3e-06 56.2 45 62.2
Hund16372 Selenicereus undatus HOM05D000702 ORTHO05D001796 1.3e-06 56.2 45 66.7
THA.LOC104806165 Tarenaya hassleriana HOM05D000702 ORTHO05D001796 1.3e-06 56.2 48 54.2
ECA247G3156 Erigeron canadensis HOM05D000702 ORTHO05D001796 1.7e-06 55.8 47 55.3
Lsat_1_v5_gn_1_23561 Lactuca sativa HOM05D000702 ORTHO05D001796 1.7e-06 55.8 66 48.5
arahy.Tifrunner.gnm1.ann1.K0A0HQ Arachis hypogaea HOM05D000702 ORTHO05D001796 2.2e-06 55.5 47 59.6
arahy.Tifrunner.gnm1.ann1.VHC3ET Arachis hypogaea HOM05D000702 ORTHO05D001796 2.2e-06 55.5 47 59.6
Lj4C67T6 Lonicera japonica HOM05D000702 ORTHO05D001796 2.2e-06 55.5 46 58.7
Lalb_Chr04g0254571 Lupinus albus HOM05D000702 ORTHO05D001796 2.2e-06 55.5 45 53.3
Eucgr.F00133 Eucalyptus grandis HOM05D000702 ORTHO05D001796 2.9e-06 55.1 46 60.9
Eucgr.F02273 Eucalyptus grandis HOM05D000702 ORTHO05D001796 2.9e-06 55.1 45 51.1
FAN23G1806 Fragaria x ananassa HOM05D000702 ORTHO05D001796 2.9e-06 55.1 47 57.4
FAN28G0892 Fragaria x ananassa HOM05D000702 ORTHO05D001796 2.9e-06 55.1 47 57.4
Phvul.002G014300 Phaseolus vulgaris HOM05D000702 ORTHO05D001796 2.9e-06 55.1 47 57.4
Prupe.6G225900 Prunus persica HOM05D000702 ORTHO05D001796 2.9e-06 55.1 47 55.3
Rhsim06G0058700 Rhododendron simsii HOM05D000702 ORTHO05D001796 2.9e-06 55.1 46 56.5
Ah.05g167160 Amaranthus hybridus HOM05D000702 ORTHO05D001796 3.8e-06 54.7 45 57.8
CSS0021034 Camellia sinensis var. sinensis HOM05D000702 ORTHO05D001796 3.8e-06 54.7 59 49.2
arahy.Tifrunner.gnm1.ann1.25DMGV Arachis hypogaea HOM05D000702 ORTHO05D001796 5.0e-06 54.3 47 59.6
Glyma.16G027800 Glycine max HOM05D000702 ORTHO05D001796 5.0e-06 54.3 46 52.2
SGA_v2.0_scaffold14G06949 Striga asiatica HOM05D000702 ORTHO05D001796 5.0e-06 54.3 41 65.9
FAN19G2199 Fragaria x ananassa HOM05D000702 ORTHO05D001796 6.5e-06 53.9 47 57.4
Manes.12G109500 Manihot esculenta HOM05D000702 ORTHO05D001796 6.5e-06 53.9 47 55.3
QL02p002551 Quercus lobata HOM05D000702 ORTHO05D001796 6.5e-06 53.9 46 56.5
TPR.G30461 Trifolium pratense HOM05D000702 ORTHO05D001796 6.5e-06 53.9 45 57.8
Ah.03g146200 Amaranthus hybridus HOM05D000702 ORTHO05D001796 8.5e-06 53.5 45 62.2
MSTRG.1046 Avicennia marina HOM05D000702 ORTHO05D001796 8.5e-06 53.5 67 43.3
FvH4_1g17000 Fragaria vesca HOM05D000702 ORTHO05D001796 8.5e-06 53.5 45 57.8
FAN23G1771 Fragaria x ananassa HOM05D000702 ORTHO05D001796 8.5e-06 53.5 45 57.8
FAN26G1805 Fragaria x ananassa HOM05D000702 ORTHO05D001796 8.5e-06 53.5 45 57.8
Lj2g0026146 Lotus japonicus HOM05D000702 ORTHO05D001796 8.5e-06 53.5 45 60.0
Medtr5g016270 Medicago truncatula HOM05D000702 ORTHO05D001796 8.5e-06 53.5 46 60.9
Phvul.003G238600 Phaseolus vulgaris HOM05D000702 ORTHO05D001796 8.5e-06 53.5 45 64.4
TPR.G23885 Trifolium pratense HOM05D000702 ORTHO05D001796 8.5e-06 53.5 45 55.6
unitig_21.g20636 Utricularia gibba HOM05D000702 ORTHO05D001796 8.5e-06 53.5 61 52.5


User provided reference genes

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