Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 1.2e-230 802.7 390 100.0
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 1.3e-219 766.1 399 95.2
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.0e-213 745.0 390 93.6
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 2.6e-188 662.1 394 83.5
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.1e-178 630.2 400 79.2
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 5.5e-175 617.8 398 77.1
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 6.3e-171 604.4 389 78.9
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.7e-160 569.7 398 71.1
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.4e-157 560.1 398 70.6
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 7.5e-156 554.3 398 69.6
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 6.3e-155 551.2 398 69.3
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 8.3e-155 550.8 399 69.4
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 1.6e-145 520.0 398 66.1
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 3.5e-145 518.8 398 64.8
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 1.5e-143 513.5 398 65.8
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 7.3e-143 511.1 398 64.8
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 1.2e-142 510.4 401 64.3
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 1.2e-142 510.4 399 62.4
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 2.1e-142 509.6 413 63.0
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 2.8e-142 509.2 398 63.6
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 4.7e-142 508.4 401 63.1
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 6.2e-142 508.1 400 64.0
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 8.1e-142 507.7 404 64.4
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.0e-141 505.4 400 64.0
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 6.8e-141 504.6 402 64.7
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 1.2e-140 503.8 402 64.4
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 1.5e-140 503.4 398 64.8
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 2.0e-140 503.1 397 63.7
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 1.3e-139 500.4 398 63.1
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.2e-139 499.6 399 60.7
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 4.9e-139 498.4 399 60.7
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 6.4e-139 498.0 398 63.1
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 6.4e-139 498.0 400 63.2
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 1.1e-138 497.3 405 62.7
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.9e-138 496.5 399 62.9
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 2.4e-138 496.1 357 69.7
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 2.4e-138 496.1 398 61.8
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 4.6e-137 491.9 398 62.3
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 3.0e-136 489.2 397 62.2
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 3.0e-136 489.2 401 62.6
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 5.1e-136 488.4 399 61.9
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 6.6e-136 488.0 399 62.4
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 8.6e-136 487.6 398 61.6
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 8.6e-136 487.6 398 61.8
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.9e-135 486.5 398 62.1
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 1.9e-135 486.5 394 63.5
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 1.2e-134 483.8 399 61.2
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 1.6e-134 483.4 398 61.6
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 4.7e-134 481.9 442 58.6
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 1.4e-133 480.3 398 62.1
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 4.0e-133 478.8 398 60.8
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 4.0e-133 478.8 400 61.2
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 5.2e-133 478.4 405 61.2
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 1.2e-132 477.2 399 60.7
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 5.8e-132 474.9 400 60.2
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 1.3e-131 473.8 400 61.2
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.3e-131 473.8 442 57.2
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 2.9e-131 472.6 400 59.5
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 3.7e-131 472.2 402 60.7
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 4.9e-131 471.9 402 61.2
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 6.4e-131 471.5 400 61.0
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 3.5e-129 465.7 411 58.9
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 4.6e-129 465.3 400 60.0
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.3e-128 463.8 403 59.1
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 3.0e-128 462.6 392 59.7
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 2.5e-127 459.5 405 59.5
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 2.5e-127 459.5 402 60.0
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 2.5e-127 459.5 399 58.6
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 1.6e-126 456.8 401 59.9
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 2.1e-126 456.4 419 57.5
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 2.1e-126 456.4 402 59.0
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 2.1e-126 456.4 400 59.0
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 2.8e-126 456.1 399 57.4
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 2.8e-126 456.1 398 57.5
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 3.6e-126 455.7 412 59.0
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 6.2e-126 454.9 398 57.5
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 1.1e-125 454.1 399 57.6
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 1.1e-125 454.1 400 59.2
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 1.4e-125 453.8 401 58.6
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 4.0e-125 452.2 389 58.4
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 5.2e-125 451.8 399 57.4
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 5.2e-125 451.8 401 59.1
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 2.0e-124 449.9 401 60.1
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 2.0e-124 449.9 401 60.1
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 4.4e-124 448.7 476 51.7
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 2.2e-123 446.4 400 58.5
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 3.8e-123 445.7 398 57.0
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 2.7e-121 439.5 394 56.3
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 4.6e-121 438.7 398 56.3
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 6.0e-121 438.3 398 57.5
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 7.8e-121 438.0 423 55.6
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 1.7e-120 436.8 406 56.7
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 2.3e-120 436.4 387 57.9
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 8.7e-120 434.5 388 58.2
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 1.5e-119 433.7 388 58.0
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 1.5e-119 433.7 399 54.9
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 4.3e-119 432.2 400 55.8
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 5.6e-119 431.8 396 58.1
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.1e-118 429.9 432 54.4
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 2.1e-118 429.9 432 54.4
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 2.4e-117 426.4 390 55.9
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 3.1e-117 426.0 376 58.0
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 5.3e-117 425.2 363 59.5
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 9.0e-117 424.5 394 55.6
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 7.6e-116 421.4 394 55.3
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 2.2e-115 419.9 393 56.2
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 6.4e-115 418.3 338 61.2
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 4.2e-114 415.6 400 55.8
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 2.1e-113 413.3 394 56.6
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 2.1e-113 413.3 333 61.3
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 3.5e-113 412.5 392 55.4
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.3e-112 410.6 394 56.3
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 5.1e-112 408.7 401 54.9
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 2.4e-109 399.8 400 52.8
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 3.8e-107 392.5 400 53.8
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 4.9e-107 392.1 385 53.5
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 1.1e-106 391.0 390 53.3
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 1.4e-106 390.6 389 53.5
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 4.2e-106 389.0 384 53.9
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 7.9e-105 384.8 391 52.9
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 1.8e-104 383.6 390 53.1
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 5.6e-103 378.6 360 54.2
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 1.2e-100 370.9 259 69.9
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.2e-100 370.9 358 54.2
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 4.9e-99 365.5 340 55.3
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 8.4e-99 364.8 245 71.8
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 7.9e-97 358.2 311 57.9
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 3.3e-95 352.8 353 52.1
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 3.3e-95 352.8 353 52.1
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 7.4e-95 351.7 353 51.8
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 3.7e-94 349.4 346 52.9
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 7.6e-92 341.7 330 53.0
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 7.9e-89 331.6 391 49.6
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 3.9e-88 329.3 330 52.1
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.5e-87 326.6 272 57.0
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 3.4e-84 316.2 315 52.1
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.8e-83 312.8 256 60.9
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 1.6e-81 307.4 396 43.9
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.8e-78 296.6 266 57.1
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.1e-77 293.1 228 62.3
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 9.1e-77 291.6 256 58.2
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 7.7e-76 288.5 387 41.1
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 8.5e-75 285.0 252 56.3
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 1.8e-72 277.3 393 40.7
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 1.3e-70 271.2 398 40.7
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 5.3e-69 265.8 241 56.4
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 3.8e-67 259.6 396 39.1
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 1.6e-65 254.2 272 50.7
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.7e-62 243.0 156 73.1
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 5.2e-56 222.6 364 40.7
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 4.8e-54 216.1 434 34.6
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 3.4e-47 193.4 189 52.9
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 1.8e-40 171.0 355 34.4
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 2.0e-39 167.5 136 62.5
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 2.9e-38 163.7 127 68.5
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 4.1e-37 159.8 128 65.6
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 1.8e-32 144.4 123 58.5
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 8.9e-32 142.1 447 28.2
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 2.7e-28 130.6 217 35.5
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 6.0e-28 129.4 372 30.4
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 6.0e-28 129.4 217 35.5
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.7e-27 127.9 113 54.9
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 1.7e-22 111.3 179 30.2
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 6.4e-22 109.4 124 44.4
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 3.1e-16 90.5 84 56.0
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 1.5e-15 88.2 116 44.8
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 4.4e-15 86.7 62 69.4
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 2.2e-14 84.3 55 72.7
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.5e-12 77.0 71 56.3
Psat7g177720 Pisum sativum HOM05D003933 ORTHO05D004746 5.2e-08 63.2 44 75.0
BolC2t12147H Brassica oleracea HOM05D003933 ORTHO05D028341 3.4e-07 60.5 41 63.4
COL.COLO4_20881 Corchorus olitorius HOM05D003933 ORTHO05D004746 3.4e-07 60.5 91 41.8
BcaC03g13212 Brassica carinata HOM05D003933 ORTHO05D004746 1.3e-06 58.5 103 38.8


User provided reference genes

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