Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g077950.2 Solanum lycopersicum HOM05D001879 ORTHO05D007648 4.0e-28 128.3 118 100.0
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 8.1e-21 104.0 108 99.1
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 3.9e-15 85.1 108 63.0
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 3.9e-15 85.1 108 63.9
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 2.8e-13 79.0 108 75.9
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 2.8e-13 79.0 108 42.6
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 1.1e-12 77.0 108 46.3
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 6.9e-12 74.3 108 40.7
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 9.0e-12 73.9 106 55.7
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 1.5e-11 73.2 44 77.3
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 2.0e-11 72.8 108 42.6
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 5.8e-11 71.2 44 70.5
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 1.3e-10 70.1 109 40.4
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 1.7e-10 69.7 108 38.9
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 1.7e-10 69.7 108 39.8
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 1.7e-10 69.7 109 73.4
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 2.9e-10 68.9 105 45.7
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 3.8e-10 68.6 44 68.2
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 8.4e-10 67.4 106 57.5
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 8.4e-10 67.4 108 38.0
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 1.1e-09 67.0 43 67.4
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 1.1e-09 67.0 44 65.9
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 1.4e-09 66.6 44 63.6
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 1.4e-09 66.6 44 63.6
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.4e-09 66.6 44 63.6
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 1.9e-09 66.2 109 37.6
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 1.9e-09 66.2 44 63.6
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 4.2e-09 65.1 108 48.1
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 5.5e-09 64.7 49 59.2
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 7.1e-09 64.3 44 61.4
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 7.1e-09 64.3 108 47.2
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.2e-08 63.5 42 64.3
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 1.2e-08 63.5 44 63.6
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 4.6e-08 61.6 42 61.9
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 4.6e-08 61.6 109 55.0
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 6.0e-08 61.2 45 62.2
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 7.9e-08 60.8 109 79.8
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 1.0e-07 60.5 46 60.9
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.0e-07 60.5 44 54.5
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 1.8e-07 59.7 109 54.1
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 3.0e-07 58.9 44 59.1
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 3.9e-07 58.5 44 56.8
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 5.1e-07 58.2 44 61.4
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 6.7e-07 57.8 109 59.6
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 8.7e-07 57.4 45 66.7
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 8.7e-07 57.4 107 37.4
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 8.7e-07 57.4 45 68.9
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 8.7e-07 57.4 109 33.0
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 8.7e-07 57.4 109 45.9
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 8.7e-07 57.4 109 59.6
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 1.5e-06 56.6 108 48.1
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 1.9e-06 56.2 44 56.8
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 2.5e-06 55.8 44 56.8
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 2.5e-06 55.8 44 56.8
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 2.5e-06 55.8 44 56.8
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 2.5e-06 55.8 44 56.8
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 3.3e-06 55.5 44 54.5
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 3.3e-06 55.5 44 52.3
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 3.3e-06 55.5 46 63.0
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 4.3e-06 55.1 44 54.5
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 4.3e-06 55.1 46 63.0
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 4.3e-06 55.1 46 63.0
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 4.3e-06 55.1 46 63.0
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 7.4e-06 54.3 40 62.5
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 9.6e-06 53.9 42 59.5
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 9.6e-06 53.9 109 54.1


User provided reference genes

Program Settings