Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g077840.2 Solanum lycopersicum HOM05D007423 ORTHO05D009091 1.1e-56 223.0 108 100.0
Sopen04g031440 Solanum pennellii HOM05D007423 ORTHO05D009091 8.0e-15 84.0 45 88.9
PGSC0003DMG400010617 Solanum tuberosum HOM05D007423 ORTHO05D009091 8.0e-15 84.0 45 88.9
CAN.G724.25 Capsicum annuum HOM05D007423 ORTHO05D009091 1.8e-11 72.8 45 73.3
Atru.chr13.827 Acer truncatum HOM05D007423 ORTHO05D009091 2.2e-09 65.9 39 74.4
Cc10_g05770 Coffea canephora HOM05D007423 ORTHO05D009091 2.9e-09 65.5 39 74.4
Hma1.2p1_0819F.1_g223720 Hydrangea macrophylla HOM05D007423 ORTHO05D009091 2.9e-09 65.5 42 66.7
Ciclev10001602m.g Citrus clementina HOM05D007423 ORTHO05D009091 5.0e-09 64.7 71 49.3
TWI56G0135 Tripterygium wilfordii HOM05D007423 ORTHO05D009091 6.5e-09 64.3 40 70.0
COL.COLO4_28509 Corchorus olitorius HOM05D007423 ORTHO05D009091 8.5e-09 63.9 42 66.7
SalBow7G0003 Salvia bowleyana HOM05D007423 ORTHO05D009091 8.5e-09 63.9 39 71.8
Eucgr.F00082 Eucalyptus grandis HOM05D007423 ORTHO05D009091 1.1e-08 63.5 40 70.0
Lj4C71T2 Lonicera japonica HOM05D007423 ORTHO05D009091 1.1e-08 63.5 44 63.6
Duzib041G0474 Durio zibethinus HOM05D007423 ORTHO05D009091 1.5e-08 63.2 42 66.7
Sabra02G0093200 Salix brachista HOM05D007423 ORTHO05D009091 1.5e-08 63.2 39 69.2
Haze_22440 Corylus avellana HOM05D007423 ORTHO05D009091 3.2e-08 62.0 40 67.5
Gohir.A06G024100 Gossypium hirsutum HOM05D007423 ORTHO05D009091 3.2e-08 62.0 42 64.3
Gohir.D06G021200 Gossypium hirsutum HOM05D007423 ORTHO05D009091 3.2e-08 62.0 42 64.3
Gorai.010G025800 Gossypium raimondii HOM05D007423 ORTHO05D009091 3.2e-08 62.0 42 64.3
Manes.18G046400 Manihot esculenta HOM05D007423 ORTHO05D009091 3.2e-08 62.0 40 65.0
Potri.014G016200 Populus trichocarpa HOM05D007423 ORTHO05D009091 3.2e-08 62.0 40 70.0
Thecc.08G089100 Theobroma cacao HOM05D007423 ORTHO05D009091 3.2e-08 62.0 42 64.3
MSTRG.25038 Avicennia marina HOM05D007423 ORTHO05D009091 4.2e-08 61.6 39 69.2
Gohir.A05G209900 Gossypium hirsutum HOM05D007423 ORTHO05D009091 4.2e-08 61.6 43 62.8
Phvul.001G027100 Phaseolus vulgaris HOM05D007423 ORTHO05D009091 4.2e-08 61.6 34 76.5
TWI12G0330 Tripterygium wilfordii HOM05D007423 ORTHO05D009091 4.2e-08 61.6 40 67.5
VMungo0647G0208 Vigna mungo HOM05D007423 ORTHO05D009091 4.2e-08 61.6 34 76.5
Potri.002G118700 Populus trichocarpa HOM05D007423 ORTHO05D009091 5.5e-08 61.2 43 65.1
Dinv44955 Davidia involucrata HOM05D007423 ORTHO05D009091 7.2e-08 60.8 39 66.7
Duzib093G1102 Durio zibethinus HOM05D007423 ORTHO05D009091 7.2e-08 60.8 39 69.2
QL12p038053 Quercus lobata HOM05D007423 ORTHO05D009091 7.2e-08 60.8 39 69.2
Actinidia22694 Actinidia chinensis HOM05D007423 ORTHO05D009091 9.4e-08 60.5 39 69.2
Cfa013780 Carpinus fangiana HOM05D007423 ORTHO05D009091 9.4e-08 60.5 42 64.3
Cfa013781 Carpinus fangiana HOM05D007423 ORTHO05D009091 9.4e-08 60.5 42 64.3
Duzib116G0599 Durio zibethinus HOM05D007423 ORTHO05D009091 9.4e-08 60.5 42 64.3
Rhsim07G0220000 Rhododendron simsii HOM05D007423 ORTHO05D009091 9.4e-08 60.5 44 63.6
Medtr1g018140 Medicago truncatula HOM05D007423 ORTHO05D009091 1.2e-07 60.1 39 64.1
TPR.G3793 Trifolium pratense HOM05D007423 ORTHO05D009091 1.2e-07 60.1 38 68.4
Cpa.g.c34911 Carica papaya HOM05D007423 ORTHO05D009091 1.6e-07 59.7 39 64.1
ClCG08G016460 Citrullus lanatus HOM05D007423 ORTHO05D009091 1.6e-07 59.7 42 59.5
DCAR_020047 Daucus carota HOM05D007423 ORTHO05D009091 1.6e-07 59.7 41 61.0
Lj5g0013479 Lotus japonicus HOM05D007423 ORTHO05D009091 1.6e-07 59.7 35 71.4
Psat6g016240 Pisum sativum HOM05D007423 ORTHO05D009091 1.6e-07 59.7 37 64.9
TAR381G1462 Trochodendron aralioides HOM05D007423 ORTHO05D009091 1.6e-07 59.7 44 59.1
Manes.05G181850 Manihot esculenta HOM05D007423 ORTHO05D009091 2.1e-07 59.3 39 69.2
Oeu053610.1 Olea europaea HOM05D007423 ORTHO05D009091 2.1e-07 59.3 39 69.2
Lalb_Chr22g0355601 Lupinus albus HOM05D007423 ORTHO05D009091 2.7e-07 58.9 38 63.2
Actinidia10198 Actinidia chinensis HOM05D007423 ORTHO05D009091 4.7e-07 58.2 39 66.7
Migut.C00488 Erythranthe guttata HOM05D007423 ORTHO05D009091 6.1e-07 57.8 39 64.1
Oeu040517.1 Olea europaea HOM05D007423 ORTHO05D009091 6.1e-07 57.8 34 73.5
FvH4_2g33130 Fragaria vesca HOM05D007423 ORTHO05D009091 8.0e-07 57.4 45 57.8
FAN24G2841 Fragaria x ananassa HOM05D007423 ORTHO05D009091 8.0e-07 57.4 45 57.8
CANSAT25G1658 Cannabis sativa HOM05D007423 ORTHO05D009091 1.0e-06 57.0 37 64.9
CiPaw.07G175100 Carya illinoinensis HOM05D007423 ORTHO05D009091 1.0e-06 57.0 42 61.9
Glyma.14G088700 Glycine max HOM05D007423 ORTHO05D009091 1.0e-06 57.0 33 72.7
Nn5g30581 Nelumbo nucifera HOM05D007423 ORTHO05D009091 1.0e-06 57.0 40 60.0
HanXRQChr05g0150951 Helianthus annuus HOM05D007423 ORTHO05D009091 1.4e-06 56.6 39 64.1
MELO3C010807.2 Cucumis melo HOM05D007423 ORTHO05D009091 1.8e-06 56.2 42 57.1
CsaV3_2G026150 Cucumis sativus L. HOM05D007423 ORTHO05D009091 1.8e-06 56.2 42 57.1
FAN15G1020 Fragaria x ananassa HOM05D007423 ORTHO05D009091 1.8e-06 56.2 39 66.7
Gohir.D05G213200 Gossypium hirsutum HOM05D007423 ORTHO05D009091 1.8e-06 56.2 43 60.5
Gorai.009G219800 Gossypium raimondii HOM05D007423 ORTHO05D009091 1.8e-06 56.2 43 60.5
CSS0004105 Camellia sinensis var. sinensis HOM05D007423 ORTHO05D009091 3.0e-06 55.5 42 61.9
CSS0046798 Camellia sinensis var. sinensis HOM05D007423 ORTHO05D009091 3.0e-06 55.5 42 61.9
Prupe.1G423100 Prunus persica HOM05D007423 ORTHO05D009091 3.0e-06 55.5 40 57.5
VMungo1309G2697 Vigna mungo HOM05D007423 ORTHO05D009091 3.0e-06 55.5 39 61.5
Glyma.04G045200 Glycine max HOM05D007423 ORTHO05D009091 4.0e-06 55.1 39 61.5
Phvul.009G071100 Phaseolus vulgaris HOM05D007423 ORTHO05D009091 4.0e-06 55.1 39 59.0
GSVIVG01009345001 Vitis vinifera HOM05D007423 ORTHO05D009091 4.0e-06 55.1 43 55.8
Glyma.06G045700 Glycine max HOM05D007423 ORTHO05D009091 5.2e-06 54.7 34 67.6
MD15G1070300 Malus domestica HOM05D007423 ORTHO05D009091 5.2e-06 54.7 40 62.5
RcHm_v2.0_Chr6g0309541 Rosa chinensis HOM05D007423 ORTHO05D009091 6.7e-06 54.3 44 54.5
SGA_v2.0_scaffold238G43961 Striga asiatica HOM05D007423 ORTHO05D009091 8.8e-06 53.9 34 73.5


User provided reference genes

Program Settings