Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 6.4e-210 733.8 361 100.0
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 9.2e-209 729.9 361 99.4
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 2.4e-201 705.3 359 96.1
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 3.7e-173 611.7 363 86.8
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 6.9e-172 607.4 362 85.1
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 4.6e-168 594.7 363 84.0
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 2.3e-151 539.3 370 77.6
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 9.9e-94 347.8 374 53.5
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 1.6e-91 340.5 376 51.9
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 2.1e-91 340.1 368 53.3
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 1.0e-90 337.8 374 51.6
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 3.0e-90 336.3 365 53.2
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 5.1e-90 335.5 359 51.5
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 1.1e-89 334.3 375 54.1
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 9.6e-89 331.3 361 52.9
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 3.6e-88 329.3 363 52.1
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 1.8e-87 327.0 388 51.0
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 5.2e-87 325.5 363 51.8
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 3.2e-84 316.2 385 50.1
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 4.2e-84 315.8 385 50.4
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 5.4e-84 315.5 384 49.5
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 9.3e-84 314.7 372 51.6
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 9.3e-84 314.7 372 51.6
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.2e-83 314.3 382 50.5
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.2e-83 314.3 386 48.7
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 2.1e-83 313.5 381 48.6
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 2.1e-83 313.5 353 51.3
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 4.6e-83 312.4 362 50.8
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 1.0e-82 311.2 368 47.6
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 1.3e-82 310.8 384 49.5
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 5.1e-82 308.9 379 49.1
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 1.1e-81 307.8 384 49.2
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 7.3e-81 305.1 356 52.5
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 1.3e-80 304.3 374 48.9
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 2.8e-80 303.1 382 48.7
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 2.8e-80 303.1 392 48.0
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 4.8e-80 302.4 371 50.9
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 8.1e-80 301.6 371 49.9
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 1.1e-79 301.2 367 49.6
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.1e-79 301.2 373 47.7
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 1.8e-79 300.4 377 49.6
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 5.3e-79 298.9 383 48.0
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 1.5e-78 297.4 371 49.6
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 1.3e-77 294.3 333 51.7
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 3.8e-77 292.7 362 50.6
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 1.4e-76 290.8 374 46.0
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 4.2e-76 289.3 373 47.5
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 5.4e-76 288.9 373 48.0
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.2e-75 287.7 385 45.5
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 1.6e-75 287.3 367 48.0
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.3e-74 284.3 372 47.6
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.3e-74 283.5 355 48.2
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 2.3e-74 283.5 380 45.8
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 5.1e-74 282.3 365 47.4
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 8.7e-74 281.6 383 45.7
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 4.0e-71 272.7 350 47.7
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 1.2e-70 271.2 364 45.6
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 1.2e-70 271.2 388 45.9
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 1.5e-70 270.8 360 47.5
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 3.4e-70 269.6 358 46.6
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 9.9e-70 268.1 363 45.2
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 9.9e-70 268.1 372 45.7
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 8.4e-69 265.0 364 45.6
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 1.9e-68 263.8 364 47.0
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 7.1e-68 261.9 355 45.6
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.8e-66 257.3 358 44.7
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 1.8e-66 257.3 382 42.1
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 3.0e-66 256.5 384 43.2
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 5.1e-66 255.8 389 42.4
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.1e-65 254.6 363 43.3
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 3.3e-65 253.1 364 45.6
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.1e-64 250.4 387 43.2
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 6.2e-64 248.8 380 44.2
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 2.4e-63 246.9 378 42.9
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 9.0e-63 245.0 356 43.8
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 9.0e-63 245.0 360 43.6
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 1.2e-62 244.6 363 44.6
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.2e-62 244.6 370 43.8
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 2.6e-62 243.4 362 43.4
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 2.6e-62 243.4 363 44.6
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 3.4e-62 243.0 350 44.0
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 4.5e-62 242.7 363 44.4
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 5.8e-62 242.3 447 39.1
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 7.6e-62 241.9 437 40.3
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 7.6e-62 241.9 361 44.0
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 1.0e-61 241.5 352 44.9
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 1.0e-61 241.5 339 45.1
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 1.3e-61 241.1 363 44.4
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 2.2e-61 240.4 363 44.1
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 2.9e-61 240.0 364 43.1
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 1.6e-59 234.2 374 41.4
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 6.7e-58 228.8 423 39.5
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 6.7e-58 228.8 366 44.3
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 2.1e-56 223.8 388 41.5
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 8.2e-56 221.9 342 42.7
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 6.9e-55 218.8 373 39.9
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 6.9e-55 218.8 356 41.6
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 1.5e-54 217.6 206 53.9
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 2.0e-54 217.2 362 42.3
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 1.2e-51 208.0 266 45.9
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 3.6e-51 206.5 332 41.6
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 2.3e-50 203.8 363 39.7
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 8.7e-50 201.8 244 48.8
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.1e-49 201.4 243 48.6
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 1.3e-48 198.0 358 40.8
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 1.1e-47 194.9 366 38.5
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 5.3e-47 192.6 341 42.5
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 1.3e-45 188.0 365 38.9
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 5.0e-45 186.0 200 53.5
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 1.9e-44 184.1 362 39.8
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 4.2e-44 183.0 203 52.2
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 3.6e-43 179.9 293 42.0
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 8.8e-42 175.3 181 51.4
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 1.5e-41 174.5 197 51.8
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 5.7e-41 172.6 368 36.7
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 8.2e-40 168.7 358 37.7
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 5.3e-39 166.0 351 37.3
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 2.6e-38 163.7 197 50.3
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 4.5e-38 162.9 360 38.1
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 3.8e-37 159.8 355 33.8
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 5.5e-36 156.0 355 34.1
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 1.2e-35 154.8 280 39.3
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 6.1e-35 152.5 121 59.5
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 2.2e-32 144.1 301 37.2
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 8.0e-27 125.6 123 58.5
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 8.2e-24 115.5 229 38.9
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 3.8e-21 106.7 107 57.0
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 1.9e-20 104.4 151 39.7
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 3.2e-20 103.6 151 39.1
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 8.8e-18 95.5 87 59.8
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 2.0e-17 94.4 344 32.0
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 2.5e-12 77.4 139 37.4
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.5e-12 77.4 165 32.1
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 4.7e-11 73.2 350 26.0
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.3e-10 70.9 166 31.9
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 6.8e-10 69.3 165 30.3
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 8.8e-10 68.9 90 44.4
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.8e-08 63.9 165 29.1
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 7.0e-07 59.3 69 52.2
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 9.2e-07 58.9 163 28.8
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 9.2e-07 58.9 163 28.8
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 9.2e-07 58.9 163 28.8
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 9.2e-07 58.9 163 28.8
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 9.2e-07 58.9 163 28.8
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 2.0e-06 57.8 163 27.6
Actinidia08859 Actinidia chinensis HOM05D001735 ORTHO05D001640 2.7e-06 57.4 141 29.8


User provided reference genes

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