Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 8.4e-224 780.0 390 100.0
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 1.9e-223 778.9 390 99.7
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 1.1e-220 769.6 390 98.5
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 4.7e-182 641.3 426 78.9
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 3.1e-170 602.1 410 78.5
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 2.0e-161 572.8 403 73.7
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 2.1e-158 562.8 397 71.3
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 1.4e-157 560.1 394 71.8
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 5.2e-157 558.1 432 71.5
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 8.9e-157 557.4 397 73.3
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 8.3e-155 550.8 398 72.1
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 1.4e-154 550.1 397 72.5
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 5.4e-154 548.1 395 71.1
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 9.2e-154 547.4 396 70.7
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 3.5e-153 545.4 397 70.0
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 5.9e-153 544.7 397 70.0
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 7.8e-153 544.3 411 68.4
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 7.8e-153 544.3 396 69.7
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 1.3e-152 543.5 396 71.5
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 2.3e-152 542.7 411 68.4
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 1.5e-151 540.0 397 70.3
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 4.3e-151 538.5 395 71.1
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 9.5e-151 537.3 396 69.4
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 2.1e-150 536.2 397 70.3
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 2.8e-150 535.8 395 70.1
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.8e-150 535.8 396 70.5
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.8e-150 535.8 396 70.5
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 3.6e-150 535.4 396 69.4
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 6.1e-150 534.6 396 69.2
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 1.0e-149 533.9 400 68.5
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.4e-149 533.5 423 66.9
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 1.8e-149 533.1 395 68.1
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 3.1e-149 532.3 397 68.5
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 4.0e-149 531.9 398 70.6
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 2.0e-148 529.6 392 69.4
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.6e-148 529.3 398 70.4
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.6e-148 529.3 396 69.7
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 3.4e-148 528.9 395 68.6
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 4.4e-148 528.5 396 68.9
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 2.9e-147 525.8 396 67.9
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 4.9e-147 525.0 396 69.4
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 4.9e-147 525.0 412 68.4
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 1.4e-146 523.5 393 67.9
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 1.4e-146 523.5 396 68.9
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 1.9e-146 523.1 394 68.3
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 3.2e-146 522.3 387 69.0
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 7.0e-146 521.2 392 69.1
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 1.6e-145 520.0 395 68.1
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 2.0e-145 519.6 396 68.2
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 2.7e-145 519.2 397 68.3
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 3.5e-145 518.8 387 69.3
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 6.0e-145 518.1 392 67.3
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.0e-144 517.3 392 69.9
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 2.3e-144 516.2 392 68.1
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 3.9e-144 515.4 392 66.8
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 3.9e-144 515.4 396 68.7
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.5e-143 513.5 396 68.4
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 1.5e-143 513.5 395 66.8
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 1.5e-143 513.5 396 65.4
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 7.3e-143 511.1 390 68.5
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 7.3e-143 511.1 395 66.3
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 1.2e-142 510.4 391 68.8
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 2.1e-142 509.6 396 65.9
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 2.8e-142 509.2 403 66.3
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 4.7e-142 508.4 392 66.1
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 4.0e-141 505.4 410 65.1
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 1.5e-140 503.4 397 64.7
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 2.0e-140 503.1 423 63.8
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 2.0e-140 503.1 388 69.3
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 2.6e-140 502.7 397 66.2
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 7.5e-140 501.1 422 63.0
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 4.9e-139 498.4 399 64.2
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 5.4e-138 495.0 389 65.3
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 1.6e-137 493.4 385 65.7
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 2.7e-137 492.7 391 62.7
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 3.5e-137 492.3 396 64.6
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 1.3e-136 490.3 396 64.4
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 3.0e-136 489.2 392 63.8
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 1.5e-135 486.9 396 65.9
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 1.9e-135 486.5 440 60.2
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 3.3e-135 485.7 382 65.7
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 4.3e-135 485.3 392 63.5
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 1.4e-133 480.3 390 65.9
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.0e-133 478.8 356 70.8
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 6.8e-133 478.0 396 63.9
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 5.8e-132 474.9 403 63.5
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 2.9e-131 472.6 385 62.3
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 2.9e-131 472.6 400 63.2
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 1.4e-130 470.3 394 64.2
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 4.1e-130 468.8 390 64.6
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 3.5e-129 465.7 401 63.3
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 2.0e-124 449.9 408 59.8
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 8.4e-123 444.5 396 60.9
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 5.1e-120 435.3 388 58.2
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.5e-119 433.7 388 58.2
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 1.9e-119 433.3 389 58.9
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 7.3e-119 431.4 394 57.4
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 2.1e-118 429.9 307 72.6
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 2.6e-116 422.9 391 58.1
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 7.1e-114 414.8 396 55.6
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 1.2e-113 414.1 385 57.4
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 4.6e-113 412.1 375 60.0
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 1.0e-112 411.0 393 56.0
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 3.3e-111 406.0 392 56.1
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 1.3e-110 404.1 421 56.8
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 6.2e-110 401.7 396 56.3
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 6.4e-107 391.7 394 56.6
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 9.3e-106 387.9 269 70.3
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 8.4e-91 338.2 302 57.0
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 8.4e-91 338.2 399 48.9
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 3.2e-90 336.3 307 58.0
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 3.5e-89 332.8 383 47.5
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 2.6e-84 316.6 391 45.5
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 7.2e-82 308.5 375 45.1
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 4.8e-78 295.8 424 42.9
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 4.5e-76 289.3 294 54.4
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 1.7e-67 260.8 236 56.4
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 2.7e-57 226.9 254 47.6
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 1.2e-55 221.5 340 43.2
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 4.8e-54 216.1 354 41.8
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 1.4e-53 214.5 155 67.7
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 3.1e-53 213.4 159 73.6
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 6.4e-38 162.5 115 75.7
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.6e-33 147.9 110 70.9
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 4.7e-33 146.4 110 70.0
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 8.0e-33 145.6 110 70.9
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.8e-31 139.4 110 68.2
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 1.9e-26 124.4 96 69.8
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 9.5e-26 122.1 117 60.7
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 3.4e-23 113.6 125 48.8
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 7.5e-23 112.5 99 53.5
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 1.2e-20 105.1 70 74.3
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 5.6e-18 96.3 63 79.4
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 9.5e-18 95.5 79 58.2
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.3e-14 85.1 93 46.2
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 2.7e-12 77.4 346 25.1
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.5e-12 77.0 50 78.0
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 5.1e-11 73.2 67 53.7
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 6.6e-11 72.8 56 60.7
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 6.9e-08 62.8 45 62.2
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.7e-06 58.2 79 45.6


User provided reference genes

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