Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 0.0e+00 1169.5 576 100.0
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 0.0e+00 1083.2 560 95.9
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 1.2e-311 1072.4 557 95.7
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 6.4e-305 1050.0 584 88.4
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 1.9e-304 1048.5 575 89.7
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 4.9e-289 997.3 600 83.5
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 7.9e-271 936.8 542 85.8
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 3.9e-262 907.9 575 77.4
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 1.4e-259 899.4 575 76.2
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 1.4e-259 899.4 575 76.7
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 2.9e-257 891.7 575 76.3
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 6.5e-257 890.6 575 76.7
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 2.5e-256 888.6 575 75.3
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 4.2e-256 887.9 575 74.8
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 4.2e-256 887.9 575 75.3
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 7.2e-256 887.1 575 76.2
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 3.6e-255 884.8 573 76.3
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 3.6e-255 884.8 575 75.7
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.0e-254 883.2 575 74.8
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.4e-254 882.9 575 74.8
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 1.8e-254 882.5 575 76.0
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.8e-254 882.5 576 74.8
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 5.2e-254 880.9 576 74.0
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 6.7e-254 880.6 575 74.6
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.2e-253 879.8 575 74.4
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 1.5e-253 879.4 582 74.6
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 1.5e-253 879.4 573 76.4
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 2.6e-253 878.6 575 75.0
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 3.3e-253 878.2 575 74.6
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 4.4e-253 877.9 576 74.7
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 5.7e-253 877.5 575 75.1
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.7e-252 875.9 592 72.6
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 6.3e-252 874.0 574 74.0
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.4e-251 872.8 576 74.0
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 2.4e-251 872.1 575 74.4
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 2.4e-251 872.1 575 73.4
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 3.1e-251 871.7 575 74.8
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 2.0e-250 869.0 575 72.7
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 2.7e-250 868.6 579 74.3
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 4.5e-250 867.8 556 75.5
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 3.8e-249 864.8 575 73.2
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 5.0e-249 864.4 594 71.9
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 8.5e-249 863.6 575 73.7
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 1.1e-248 863.2 575 73.0
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 1.9e-248 862.4 576 72.7
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 3.2e-248 861.7 575 73.9
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 4.2e-248 861.3 575 73.4
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 5.5e-248 860.9 583 72.7
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 9.4e-248 860.1 575 73.7
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 1.2e-247 859.8 543 78.5
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 2.1e-247 859.0 576 72.4
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 8.0e-247 857.1 573 73.6
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 8.0e-247 857.1 575 73.2
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 1.0e-246 856.7 575 72.9
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 1.8e-246 855.9 571 72.9
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 1.8e-246 855.9 575 71.0
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 5.2e-246 854.4 575 72.0
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 7.5e-245 850.5 579 72.5
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 4.8e-244 847.8 574 71.8
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 1.4e-243 846.3 575 71.7
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 3.1e-243 845.1 575 72.9
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 3.1e-243 845.1 571 72.0
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 4.1e-243 844.7 551 75.5
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 7.0e-243 844.0 576 71.9
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 2.0e-242 842.4 576 71.5
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 2.7e-242 842.0 575 72.0
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 4.5e-242 841.3 575 71.3
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 1.0e-241 840.1 575 72.2
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 1.3e-241 839.7 573 70.7
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 2.3e-241 839.0 576 71.2
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 3.8e-241 838.2 575 71.7
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 5.0e-241 837.8 575 70.8
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 6.6e-241 837.4 574 71.3
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.6e-241 837.4 574 71.1
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.6e-241 837.4 574 71.1
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 6.6e-241 837.4 574 71.1
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 1.1e-240 836.6 574 70.6
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 7.2e-240 833.9 575 71.3
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 6.1e-239 830.9 575 71.1
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.4e-238 829.7 575 70.8
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.8e-238 829.3 559 72.8
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 2.3e-238 828.9 575 70.4
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 2.3e-238 828.9 580 70.5
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 5.2e-238 827.8 580 70.2
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 6.8e-238 827.4 574 70.4
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 6.8e-238 827.4 592 69.3
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 3.4e-237 825.1 574 70.4
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 9.8e-237 823.5 574 70.0
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 9.8e-237 823.5 576 70.1
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 8.3e-236 820.5 557 72.2
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 8.3e-236 820.5 571 70.4
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 7.0e-235 817.4 576 70.3
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 3.5e-234 815.1 576 70.0
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 5.9e-234 814.3 576 70.0
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 1.3e-233 813.1 574 69.0
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 9.5e-232 807.0 576 69.1
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 9.5e-232 807.0 575 68.2
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 6.1e-231 804.3 587 68.1
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 8.0e-231 803.9 575 67.8
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 1.5e-229 799.7 577 68.3
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 7.5e-229 797.3 570 69.1
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 3.5e-226 788.5 567 67.0
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 1.0e-225 786.9 576 67.5
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 6.6e-225 784.3 618 64.4
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 8.6e-225 783.9 571 69.0
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 2.5e-224 782.3 577 68.8
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 9.5e-224 780.4 567 67.4
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 3.7e-220 768.5 558 67.6
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 1.1e-219 766.9 580 65.7
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 5.6e-216 754.6 580 63.6
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 2.3e-214 749.2 571 63.2
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 6.8e-214 747.7 578 65.4
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 2.6e-213 745.7 575 64.7
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 1.3e-212 743.4 506 71.1
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 1.1e-211 740.3 506 71.7
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 2.3e-209 732.6 555 66.7
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 2.7e-202 709.1 556 64.9
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 6.6e-201 704.5 465 74.2
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.4e-198 696.8 567 60.5
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.8e-190 669.8 581 60.1
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 9.9e-181 637.5 566 56.2
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 2.4e-174 616.3 563 55.2
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.0e-173 613.2 451 68.7
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 4.6e-170 602.1 409 71.6
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.3e-169 600.5 409 72.9
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 2.8e-167 592.8 409 71.6
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 5.9e-165 585.1 567 52.7
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 7.7e-165 584.7 571 53.8
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.8e-158 563.5 502 56.2
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 1.7e-148 530.4 340 76.8
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.1e-139 501.1 295 80.0
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 5.7e-136 488.8 326 74.5
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 2.3e-129 466.8 339 67.6
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 8.8e-129 464.9 338 66.6
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 2.2e-127 460.3 354 64.7
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 3.4e-120 436.4 268 79.1
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 8.6e-116 421.8 309 67.0
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 8.6e-108 395.2 273 70.7
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 5.4e-102 375.9 238 76.5
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 2.6e-96 357.1 246 71.1
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 1.9e-86 324.3 233 68.7
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 5.8e-80 302.8 258 61.2
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 7.6e-80 302.4 266 57.9
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 8.7e-52 209.1 140 72.9
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 4.3e-51 206.8 155 67.7
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 4.8e-50 203.4 157 65.6
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 6.3e-50 203.0 156 66.0
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.4e-49 201.8 157 65.6
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 6.9e-49 199.5 180 57.2
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.7e-47 194.9 139 69.8
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 1.5e-35 155.2 98 72.4
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 4.4e-35 153.7 121 60.3
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 2.7e-24 117.9 106 58.5
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 1.0e-20 105.9 63 74.6
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 1.4e-20 105.5 63 74.6
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 5.2e-20 103.6 63 73.0
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 8.8e-20 102.8 71 64.8
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 2.0e-19 101.7 57 78.9
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 4.4e-19 100.5 67 70.1
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 5.7e-19 100.1 67 70.1
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 3.5e-16 90.9 245 27.3
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 2.9e-15 87.8 62 67.7
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 2.3e-12 78.2 515 23.3
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 2.3e-12 78.2 450 24.0
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 6.8e-12 76.6 54 64.8
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 9.8e-11 72.8 54 57.4
PRCOL_00006907 Prasinoderma coloniale HOM05D013921 ORTHO05D014814 1.7e-07 62.0 226 27.9
ECA247G1273 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.9e-06 58.5 61 44.3


User provided reference genes

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