Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g076890.4 Solanum lycopersicum HOM05D005492 ORTHO05D006911 5.6e-112 407.5 191 100.0
Sopen04g030660 Solanum pennellii HOM05D005492 ORTHO05D006911 1.4e-102 376.3 175 100.0
PGSC0003DMG400006380 Solanum tuberosum HOM05D005492 ORTHO05D006911 1.4e-102 376.3 175 100.0
Nitab4.5_0005557g0040 Nicotiana tabacum HOM05D005492 ORTHO05D006911 1.8e-102 375.9 188 92.6
CAN.G723.31 Capsicum annuum HOM05D005492 ORTHO05D006911 8.9e-102 373.6 175 98.3
Nitab4.5_0000377g0170 Nicotiana tabacum HOM05D005492 ORTHO05D006911 1.5e-101 372.9 178 96.6
Gohir.A05G264075 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.2e-98 363.2 175 94.9
Gohir.D05G266500 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.2e-98 363.2 175 94.9
Gorai.009G278400 Gossypium raimondii HOM05D005492 ORTHO05D006911 1.2e-98 363.2 175 94.9
COL.COLO4_35339 Corchorus olitorius HOM05D005492 ORTHO05D006911 6.0e-98 360.9 175 93.7
Dinv44895 Davidia involucrata HOM05D005492 ORTHO05D006911 6.0e-98 360.9 175 93.1
HanXRQChr01g0001771 Helianthus annuus HOM05D005492 ORTHO05D006911 7.8e-98 360.5 175 94.3
Gohir.D06G028400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.0e-97 360.1 175 93.7
MD08G1209200 Malus domestica HOM05D005492 ORTHO05D006911 1.3e-97 359.8 175 92.6
Thecc.08G078100 Theobroma cacao HOM05D005492 ORTHO05D006911 1.3e-97 359.8 175 93.1
MSTRG.24417 Avicennia marina HOM05D005492 ORTHO05D006911 1.7e-97 359.4 174 92.5
CARHR027130 Cardamine hirsuta HOM05D005492 ORTHO05D006911 1.7e-97 359.4 175 92.6
CANSAT35G2015 Cannabis sativa HOM05D005492 ORTHO05D006911 2.3e-97 359.0 175 92.6
Gohir.A06G029400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 2.3e-97 359.0 175 93.1
Oeu002945.1 Olea europaea HOM05D005492 ORTHO05D006911 2.3e-97 359.0 175 92.0
Prupe.1G541400 Prunus persica HOM05D005492 ORTHO05D006911 2.3e-97 359.0 175 93.1
CSS0048416 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 3.0e-97 358.6 175 92.0
RcHm_v2.0_Chr7g0232851 Rosa chinensis HOM05D005492 ORTHO05D006911 3.0e-97 358.6 175 92.6
Ciclev10002666m.g Citrus clementina HOM05D005492 ORTHO05D006911 3.9e-97 358.2 175 93.1
Oeu026363.1 Olea europaea HOM05D005492 ORTHO05D006911 3.9e-97 358.2 175 92.0
TWI12G1341 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 3.9e-97 358.2 175 92.6
Gorai.010G031300 Gossypium raimondii HOM05D005492 ORTHO05D006911 5.0e-97 357.8 175 93.1
MD15G1393200 Malus domestica HOM05D005492 ORTHO05D006911 5.0e-97 357.8 175 92.6
CiPaw.15G151700 Carya illinoinensis HOM05D005492 ORTHO05D006911 6.6e-97 357.5 175 92.0
Duzib041G0144 Durio zibethinus HOM05D005492 ORTHO05D006911 6.6e-97 357.5 175 93.1
PGR083G0175 Punica granatum HOM05D005492 ORTHO05D006911 6.6e-97 357.5 175 90.9
Cfa020694 Carpinus fangiana HOM05D005492 ORTHO05D006911 8.6e-97 357.1 175 92.0
Haze_18999 Corylus avellana HOM05D005492 ORTHO05D006911 8.6e-97 357.1 175 92.0
CsaV3_3G048290 Cucumis sativus L. HOM05D005492 ORTHO05D006911 8.6e-97 357.1 175 91.4
Lsat_1_v5_gn_9_81101 Lactuca sativa HOM05D005492 ORTHO05D006911 8.6e-97 357.1 174 93.1
Carub.0001s2610 Capsella rubella HOM05D005492 ORTHO05D006911 1.1e-96 356.7 175 91.4
SGA_v2.0_scaffold28G11869 Striga asiatica HOM05D005492 ORTHO05D006911 1.1e-96 356.7 174 92.0
Glyma.06G091400 Glycine max HOM05D005492 ORTHO05D006911 1.5e-96 356.3 172 92.4
vmacro21373 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 1.5e-96 356.3 175 92.6
AL1G40960 Arabidopsis lyrata HOM05D005492 ORTHO05D006911 1.9e-96 355.9 175 91.4
AT1G27530 Arabidopsis thaliana HOM05D005492 ORTHO05D006911 1.9e-96 355.9 175 91.4
Dinv22020 Davidia involucrata HOM05D005492 ORTHO05D006911 2.5e-96 355.5 175 92.0
Duzib041G0066 Durio zibethinus HOM05D005492 ORTHO05D006911 2.5e-96 355.5 175 92.6
Lj1g0026792 Lotus japonicus HOM05D005492 ORTHO05D006911 2.5e-96 355.5 175 91.4
Sabra02G0084500 Salix brachista HOM05D005492 ORTHO05D006911 2.5e-96 355.5 175 92.0
Migut.N02829 Erythranthe guttata HOM05D005492 ORTHO05D006911 3.3e-96 355.1 174 90.8
Migut.O00437 Erythranthe guttata HOM05D005492 ORTHO05D006911 3.3e-96 355.1 174 90.8
Eucgr.F00462 Eucalyptus grandis HOM05D005492 ORTHO05D006911 3.3e-96 355.1 175 92.0
FAN08G0693 Fragaria x ananassa HOM05D005492 ORTHO05D006911 3.3e-96 355.1 175 91.4
FAN18G0360 Fragaria x ananassa HOM05D005492 ORTHO05D006911 3.3e-96 355.1 175 91.4
Lj4A81T75 Lonicera japonica HOM05D005492 ORTHO05D006911 3.3e-96 355.1 173 93.1
Ah.00g000130 Amaranthus hybridus HOM05D005492 ORTHO05D006911 4.3e-96 354.8 175 92.6
arahy.Tifrunner.gnm1.ann1.7IN1UY Arachis hypogaea HOM05D005492 ORTHO05D006911 4.3e-96 354.8 175 91.4
arahy.Tifrunner.gnm1.ann1.EMS59G Arachis hypogaea HOM05D005492 ORTHO05D006911 4.3e-96 354.8 175 91.4
C07p17680 Brassica napus HOM05D005492 ORTHO05D006911 4.3e-96 354.8 175 92.0
THA.LOC104800327 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 4.3e-96 354.8 175 92.0
vmacro04619 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 4.3e-96 354.8 174 90.8
VMungo1309G2191 Vigna mungo HOM05D005492 ORTHO05D006911 4.3e-96 354.8 175 91.4
Thhalv10008910m.g Eutrema salsugineum HOM05D005492 ORTHO05D006911 5.6e-96 354.4 175 91.4
FAN04G2818 Fragaria x ananassa HOM05D005492 ORTHO05D006911 5.6e-96 354.4 175 90.9
Potri.002G107600 Populus trichocarpa HOM05D005492 ORTHO05D006911 5.6e-96 354.4 175 91.4
BolC3t19680H Brassica oleracea HOM05D005492 ORTHO05D006911 7.3e-96 354.0 175 91.4
Duzib116G0911 Durio zibethinus HOM05D005492 ORTHO05D006911 7.3e-96 354.0 177 91.5
ECA232G4293 Erigeron canadensis HOM05D005492 ORTHO05D006911 7.3e-96 354.0 175 92.0
A07p11710 Brassica napus HOM05D005492 ORTHO05D006911 9.5e-96 353.6 175 91.4
A08p26210 Brassica napus HOM05D005492 ORTHO05D006911 9.5e-96 353.6 175 91.4
BolC7t42275H Brassica oleracea HOM05D005492 ORTHO05D006911 9.5e-96 353.6 175 91.4
BraA07t28956Z Brassica rapa HOM05D005492 ORTHO05D006911 9.5e-96 353.6 175 91.4
BraA08t34572Z Brassica rapa HOM05D005492 ORTHO05D006911 9.5e-96 353.6 175 91.4
BcaC01g06944 Brassica carinata HOM05D005492 ORTHO05D006911 1.2e-95 353.2 175 90.9
Cpa.g.sc160.3 Carica papaya HOM05D005492 ORTHO05D006911 1.2e-95 353.2 175 90.9
C03p74220 Brassica napus HOM05D005492 ORTHO05D006911 1.6e-95 352.8 175 90.9
Hma1.2p1_1548F.1_g290020 Hydrangea macrophylla HOM05D005492 ORTHO05D006911 1.6e-95 352.8 173 90.8
unitig_8.g4867 Utricularia gibba HOM05D002193 ORTHO05D002631 1.6e-95 352.8 171 90.6
GSVIVG01009242001 Vitis vinifera HOM05D005492 ORTHO05D006911 1.6e-95 352.8 175 92.0
BcaC01g01601 Brassica carinata HOM05D005492 ORTHO05D006911 2.8e-95 352.1 175 90.9
Cc10_g08150 Coffea canephora HOM05D005492 ORTHO05D006911 2.8e-95 352.1 173 93.1
Medtr3g111110 Medicago truncatula HOM05D005492 ORTHO05D006911 2.8e-95 352.1 175 90.3
Sp1g23790 Schrenkiella parvula HOM05D005492 ORTHO05D006911 2.8e-95 352.1 175 90.3
TAR628G0115 Trochodendron aralioides HOM05D005492 ORTHO05D006911 2.8e-95 352.1 175 89.7
Manes.18G054601 Manihot esculenta HOM05D005492 ORTHO05D006911 3.6e-95 351.7 175 89.7
QL12p040192 Quercus lobata HOM05D005492 ORTHO05D006911 3.6e-95 351.7 174 89.7
BcaC05g26754 Brassica carinata HOM05D005492 ORTHO05D006911 4.7e-95 351.3 175 90.9
Glyma.04G089600 Glycine max HOM05D005492 ORTHO05D006911 4.7e-95 351.3 172 91.3
Psat5g017920 Pisum sativum HOM05D005492 ORTHO05D006911 4.7e-95 351.3 175 90.3
TWI32G1091 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 4.7e-95 351.3 175 89.7
Actinidia19266 Actinidia chinensis HOM05D005492 ORTHO05D006911 6.2e-95 350.9 175 89.7
Aqoxy5G01947 Aquilegia oxysepala HOM05D005492 ORTHO05D006911 6.2e-95 350.9 175 90.9
Lalb_Chr08g0242711 Lupinus albus HOM05D005492 ORTHO05D006911 6.2e-95 350.9 175 90.3
MBI16_g26726_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 6.2e-95 350.9 176 89.2
Sed0023469 Sechium edule HOM05D005492 ORTHO05D006911 6.2e-95 350.9 175 91.4
BcaC06g35300 Brassica carinata HOM05D005492 ORTHO05D006911 8.1e-95 350.5 175 90.9
CDE04G0412 Ceratophyllum demersum HOM05D005492 ORTHO05D006911 1.1e-94 350.1 175 88.6
AUR62035408 Chenopodium quinoa HOM05D005492 ORTHO05D006911 1.1e-94 350.1 172 93.0
AUR62035696 Chenopodium quinoa HOM05D005492 ORTHO05D006911 1.1e-94 350.1 172 93.0
Ca_15548_v3 Cicer arietinum L. HOM05D005492 ORTHO05D006911 1.1e-94 350.1 175 89.7
Actinidia10257 Actinidia chinensis HOM05D005492 ORTHO05D006911 1.4e-94 349.7 175 89.7
PSO210G2227 Papaver somniferum HOM05D005492 ORTHO05D006911 1.4e-94 349.7 175 90.3
PSO761G0095 Papaver somniferum HOM05D005492 ORTHO05D006911 1.4e-94 349.7 175 90.3
BcaB03g13980 Brassica carinata HOM05D005492 ORTHO05D006911 1.8e-94 349.4 175 90.3
Rhsim07G0214900 Rhododendron simsii HOM05D005492 ORTHO05D006911 1.8e-94 349.4 177 89.3
Sc02g0008380 Simmondsia chinensis HOM05D005492 ORTHO05D006911 4.0e-94 348.2 175 89.7
TPR.G12370 Trifolium pratense HOM05D005492 ORTHO05D006911 5.2e-94 347.8 175 89.1
Aa31LG7G10120 Aethionema arabicum HOM05D005492 ORTHO05D006911 1.2e-93 346.7 174 90.2
MSTRG.22188 Avicennia marina HOM05D005492 ORTHO05D006911 4.4e-93 344.7 173 91.3
Atru.BG.248.p Acer truncatum HOM05D005492 ORTHO05D006911 3.7e-92 341.7 174 89.1
TAR381G0934 Trochodendron aralioides HOM05D005492 ORTHO05D006911 4.1e-91 338.2 175 88.6
HPP92_010753 Vanilla planifolia HOM05D005492 ORTHO05D006911 6.6e-89 330.9 175 85.1
Hund05232 Selenicereus undatus HOM05D005492 ORTHO05D006911 2.5e-88 328.9 244 67.6
SEGI_29138 Sequoiadendron giganteum HOM05D005492 ORTHO05D006911 1.6e-87 326.2 175 82.9
Os10g0205200 Oryza sativa ssp. japonica HOM05D005492 ORTHO05D006911 5.2e-86 321.2 174 81.0
Zm00001eb010950 Zea mays HOM05D005492 ORTHO05D006911 1.2e-85 320.1 174 79.9
ATR0767G107 Amborella trichopoda HOM05D005492 ORTHO05D006911 4.9e-84 314.7 173 82.1
Peaxi162Scf00626g00718 Petunia axillaris HOM05D005492 ORTHO05D006911 1.6e-82 309.7 181 82.9
Mapoly0013s0107 Marchantia polymorpha HOM05D005492 ORTHO05D006911 2.7e-82 308.9 168 81.0
ClCG11G014860 Citrullus lanatus HOM05D005492 ORTHO05D006911 5.1e-81 304.7 150 90.0
CBR_g37394 Chara braunii HOM05D005492 ORTHO05D006911 3.3e-80 302.0 173 78.0
Pp3c16_2350 Physcomitrium patens HOM05D005492 ORTHO05D006911 3.6e-79 298.5 175 75.4
PRCOL_00001807 Prasinoderma coloniale HOM05D005492 ORTHO05D006911 3.5e-74 282.0 165 72.7
DCAR_009548 Daucus carota HOM05D005492 ORTHO05D006911 5.6e-72 274.6 132 93.2
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 1.3e-71 273.5 167 78.4
Phvul.009G146200 Phaseolus vulgaris HOM05D005492 ORTHO05D006911 1.4e-70 270.0 131 91.6
TAR381G1662 Trochodendron aralioides HOM05D005492 ORTHO05D006911 6.9e-70 267.7 131 90.1
Cre02.g142350 Chlamydomonas reinhardtii HOM05D005492 ORTHO05D006911 3.2e-67 258.8 164 69.5
Atru.chr13.934 Acer truncatum HOM05D005492 ORTHO05D006911 5.3e-62 241.5 125 87.2
MELO3C003490.2 Cucumis melo HOM05D005492 ORTHO05D006911 5.5e-59 231.5 124 84.7
Duzib093G0511 Durio zibethinus HOM05D005492 ORTHO05D006911 1.1e-56 223.8 119 84.0
FvH4_5g33720 Fragaria vesca HOM05D005492 ORTHO05D006911 1.1e-56 223.8 112 89.3
THA.LOC104807850 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 1.1e-54 217.2 125 79.2
MBI16_g14677_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 3.4e-53 212.2 114 86.0
Haze_27628 Corylus avellana HOM05D005492 ORTHO05D006911 5.8e-53 211.5 171 55.6
AagrBONN_evm.TU.Sc2ySwM_369.477 Anthoceros agrestis HOM05D005492 ORTHO05D006911 8.4e-52 207.6 112 80.4
Prupe.7G085600 Prunus persica HOM05D005492 ORTHO05D006911 2.3e-49 199.5 104 87.5
Nn2g14030 Nelumbo nucifera HOM05D005492 ORTHO05D006911 7.6e-45 184.5 141 64.5
CSS0004398 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 2.9e-44 182.6 95 88.4
MD08G1145300 Malus domestica HOM05D005492 ORTHO05D006911 1.7e-36 156.8 88 80.7
Dinv07042 Davidia involucrata HOM05D005492 ORTHO05D185078 6.5e-36 154.8 177 51.4
MD16G1251000 Malus domestica HOM05D005492 ORTHO05D245813 8.2e-31 137.9 109 62.4
MD05G1007500 Malus domestica HOM05D005492 ORTHO05D006911 1.2e-29 134.0 114 59.6
Nn5g29750 Nelumbo nucifera HOM05D005492 ORTHO05D006911 3.4e-29 132.5 66 89.4
MD00G1203800 Malus domestica HOM05D005492 ORTHO05D247194 9.1e-22 107.8 92 55.4


User provided reference genes

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