Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g076550.3 Solanum lycopersicum HOM05D002920 ORTHO05D003118 2.5e-273 944.9 488 100.0
Sopen04g030270 Solanum pennellii HOM05D002920 ORTHO05D003118 1.1e-262 909.4 474 99.4
Nitab4.5_0000131g0060 Nicotiana tabacum HOM05D002920 ORTHO05D003118 2.0e-238 828.9 482 89.2
CAN.G193.3 Capsicum annuum HOM05D002920 ORTHO05D003118 2.1e-232 808.9 474 89.2
Nitab4.5_0005345g0040 Nicotiana tabacum HOM05D002920 ORTHO05D003118 8.3e-229 797.0 450 91.1
Peaxi162Scf01112g00017 Petunia axillaris HOM05D002920 ORTHO05D003118 3.3e-209 731.9 462 82.0
Dinv44873 Davidia involucrata HOM05D002920 ORTHO05D003118 2.6e-182 642.5 478 70.3
Cc10_g08510 Coffea canephora HOM05D002920 ORTHO05D003118 2.9e-173 612.5 475 66.1
Migut.N02861 Erythranthe guttata HOM05D002920 ORTHO05D003118 8.4e-173 610.9 477 66.7
QL09p018218 Quercus lobata HOM05D002920 ORTHO05D003118 2.8e-168 595.9 477 63.9
GSVIVG01009199001 Vitis vinifera HOM05D002920 ORTHO05D003118 4.8e-168 595.1 476 63.7
MSTRG.24431 Avicennia marina HOM05D002920 ORTHO05D003118 1.1e-167 594.0 476 64.5
TWI12G0386 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 4.1e-167 592.0 477 63.1
Thecc.08G073100 Theobroma cacao HOM05D002920 ORTHO05D003118 5.3e-167 591.7 476 65.1
Ciclev10000004m.g Citrus clementina HOM05D002920 ORTHO05D003118 1.2e-166 590.5 481 63.4
Solyc12g088010.2 Solanum lycopersicum HOM05D002920 ORTHO05D003118 2.0e-166 589.7 481 62.6
Potri.002G110700 Populus trichocarpa HOM05D002920 ORTHO05D003118 3.4e-166 589.0 478 62.8
Atru.chr13.988 Acer truncatum HOM05D002920 ORTHO05D003118 5.9e-166 588.2 481 64.2
CiPaw.07G163600 Carya illinoinensis HOM05D002920 ORTHO05D003118 5.9e-166 588.2 476 63.2
TAR625G0757 Trochodendron aralioides HOM05D002920 ORTHO05D003118 7.7e-166 587.8 478 63.0
COL.COLO4_35270 Corchorus olitorius HOM05D002920 ORTHO05D003118 1.9e-164 583.2 480 62.9
Duzib116G0095 Durio zibethinus HOM05D002920 ORTHO05D003118 2.7e-163 579.3 476 62.0
TWI56G0278 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 2.7e-163 579.3 477 62.1
Cfa013811 Carpinus fangiana HOM05D002920 ORTHO05D003118 1.0e-162 577.4 477 61.8
Ca_16019_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 2.3e-162 576.2 501 60.3
ClCG08G011580 Citrullus lanatus HOM05D002920 ORTHO05D003118 2.3e-162 576.2 478 61.7
Psat5g047200 Pisum sativum HOM05D002920 ORTHO05D003118 3.9e-162 575.5 477 62.1
Glyma.06G098300 Glycine max HOM05D002920 ORTHO05D003118 6.7e-162 574.7 484 61.8
VMungo1309G0011 Vigna mungo HOM05D002920 ORTHO05D003118 8.8e-162 574.3 478 61.5
Sed0007128 Sechium edule HOM05D002920 ORTHO05D003118 1.5e-161 573.5 478 60.5
Phvul.009G035200 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 2.0e-161 573.2 476 61.3
Manes.18G056500 Manihot esculenta HOM05D002920 ORTHO05D003118 4.3e-161 572.0 478 61.5
TPR.G6371 Trifolium pratense HOM05D002920 ORTHO05D003118 5.7e-161 571.6 478 61.7
Medtr3g099880 Medicago truncatula HOM05D002920 ORTHO05D003118 3.7e-160 568.9 477 61.4
MELO3C011076.2 Cucumis melo HOM05D002920 ORTHO05D003118 6.3e-160 568.2 479 59.9
Lj1g0004035 Lotus japonicus HOM05D002920 ORTHO05D003118 1.1e-159 567.4 478 60.7
THA.LOC104823692 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 1.8e-159 566.6 479 61.6
Sabra02G0087200 Salix brachista HOM05D002920 ORTHO05D003118 4.1e-159 565.5 483 60.7
Lalb_Chr08g0242591 Lupinus albus HOM05D002920 ORTHO05D003118 6.9e-159 564.7 478 60.0
arahy.Tifrunner.gnm1.ann1.WZJ2AS Arachis hypogaea HOM05D002920 ORTHO05D003118 1.2e-158 563.9 479 60.8
Peaxi162Scf00160g01034 Petunia axillaris HOM05D002920 ORTHO05D003118 2.6e-158 562.8 447 65.3
Nn1g05621 Nelumbo nucifera HOM05D002920 ORTHO05D003118 3.4e-158 562.4 478 60.0
CANSAT11G0038 Cannabis sativa HOM05D002920 ORTHO05D003118 1.7e-157 560.1 478 60.7
SGA_v2.0_scaffold235G43665 Striga asiatica HOM05D002920 ORTHO05D003118 1.1e-156 557.4 476 60.7
Sopen12g030040 Solanum pennellii HOM05D002920 ORTHO05D003118 2.5e-156 556.2 444 63.1
SalBow2G2368 Salvia bowleyana HOM05D002920 ORTHO05D003118 4.2e-156 555.4 465 61.3
Aqoxy5G01357 Aquilegia oxysepala HOM05D002920 ORTHO05D003118 7.2e-156 554.7 479 59.3
PSO170G4177 Papaver somniferum HOM05D002920 ORTHO05D003118 1.2e-155 553.9 486 59.3
PSO210G5781 Papaver somniferum HOM05D002920 ORTHO05D003118 2.7e-155 552.7 486 59.3
CsaV3_2G030160 Cucumis sativus L. HOM05D002920 ORTHO05D003118 3.6e-155 552.4 478 59.0
Thhalv10023209m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 3.9e-154 548.9 478 59.4
HanXRQChr02g0046051 Helianthus annuus HOM05D002920 ORTHO05D003118 3.9e-154 548.9 478 59.4
EL10Ac1g00492 Beta vulgaris HOM05D002920 ORTHO05D003118 6.7e-154 548.1 482 58.5
Gohir.A05G218800 Gossypium hirsutum HOM05D002920 ORTHO05D003118 2.6e-153 546.2 484 59.9
Lsat_1_v5_gn_1_1961 Lactuca sativa HOM05D002920 ORTHO05D003118 9.7e-153 544.3 483 59.2
Gorai.009G228700 Gossypium raimondii HOM05D002920 ORTHO05D003118 1.7e-152 543.5 484 59.9
MD08G1201800 Malus domestica HOM05D002920 ORTHO05D003118 3.7e-152 542.3 482 58.9
Gohir.D05G221500 Gossypium hirsutum HOM05D002920 ORTHO05D003118 4.8e-152 542.0 484 59.7
BcaB04g20194 Brassica carinata HOM05D002920 ORTHO05D003118 1.1e-151 540.8 481 58.6
Prupe.1G535700 Prunus persica HOM05D002920 ORTHO05D003118 1.1e-151 540.8 484 59.9
BcaC09g49498 Brassica carinata HOM05D002920 ORTHO05D003118 3.1e-151 539.3 481 59.0
Carub.0002s0632 Capsella rubella HOM05D002920 ORTHO05D003118 4.1e-151 538.9 478 58.8
C09p23100 Brassica napus HOM05D002920 ORTHO05D003118 5.3e-151 538.5 479 58.7
BolC9t55228H Brassica oleracea HOM05D002920 ORTHO05D003118 5.3e-151 538.5 479 58.7
A01p28350 Brassica napus HOM05D002920 ORTHO05D003118 7.0e-151 538.1 478 59.2
PGR042G2097 Punica granatum HOM05D002920 ORTHO05D003118 2.6e-150 536.2 479 58.2
AL2G18260 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 3.5e-150 535.8 481 58.4
ECA247G2620 Erigeron canadensis HOM05D002920 ORTHO05D003118 3.5e-150 535.8 483 58.4
Ah.05g171450 Amaranthus hybridus HOM05D002920 ORTHO05D003118 7.7e-150 534.6 483 56.3
A09p18500 Brassica napus HOM05D002920 ORTHO05D003118 1.0e-149 534.3 479 58.5
BraA09t37476Z Brassica rapa HOM05D002920 ORTHO05D003118 1.0e-149 534.3 479 58.5
AT1G58250 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 2.9e-149 532.7 479 58.0
MD15G1388100 Malus domestica HOM05D002920 ORTHO05D003118 3.8e-149 532.3 483 58.6
Sp2g05360 Schrenkiella parvula HOM05D002920 ORTHO05D003118 5.5e-148 528.5 479 57.8
C01p35910 Brassica napus HOM05D002920 ORTHO05D003118 1.6e-147 526.9 503 56.7
BolC1t03549H Brassica oleracea HOM05D002920 ORTHO05D003118 1.6e-147 526.9 503 56.7
BraA01t02963Z Brassica rapa HOM05D002920 ORTHO05D003118 4.7e-147 525.4 500 56.6
BcaC04g22122 Brassica carinata HOM05D002920 ORTHO05D003118 6.1e-147 525.0 479 57.8
Sed0001865 Sechium edule HOM05D002920 ORTHO05D003118 1.8e-146 523.5 481 57.4
MBI16_g06013_MAGBIO Magnolia biondii HOM05D002920 ORTHO05D003118 1.1e-145 520.8 480 58.3
Sc26g0003000 Simmondsia chinensis HOM05D002920 ORTHO05D003118 1.1e-145 520.8 480 57.7
Lj4C86G6 Lonicera japonica HOM05D002920 ORTHO05D003118 1.7e-144 516.9 493 58.4
Actinidia19621 Actinidia chinensis HOM05D002920 ORTHO05D003118 4.8e-144 515.4 478 60.3
AUR62014366 Chenopodium quinoa HOM05D002920 ORTHO05D003118 6.3e-144 515.0 462 56.3
FvH4_5g34390 Fragaria vesca HOM05D002920 ORTHO05D003118 1.1e-143 514.2 487 57.3
FAN18G2688 Fragaria x ananassa HOM05D002920 ORTHO05D003118 3.1e-143 512.7 487 57.1
AUR62019108 Chenopodium quinoa HOM05D002920 ORTHO05D003118 5.3e-143 511.9 458 56.3
FAN08G1437 Fragaria x ananassa HOM05D002920 ORTHO05D003118 1.6e-142 510.4 487 56.9
Nitab4.5_0000354g0140 Nicotiana tabacum HOM05D002920 ORTHO05D003118 1.0e-141 507.7 437 61.8
arahy.Tifrunner.gnm1.ann1.3DHU48 Arachis hypogaea HOM05D002920 ORTHO05D003118 5.0e-141 505.4 583 49.6
CARHR053740 Cardamine hirsuta HOM05D002920 ORTHO05D003118 5.0e-141 505.4 485 55.3
FAN04G1888 Fragaria x ananassa HOM05D002920 ORTHO05D003118 6.5e-141 505.0 487 56.7
Aa31LG2G10870 Aethionema arabicum HOM05D002920 ORTHO05D003118 8.5e-141 504.6 493 55.8
DCAR_024958 Daucus carota HOM05D002920 ORTHO05D003118 1.2e-139 500.7 446 61.7
Rhsim07G0212900 Rhododendron simsii HOM05D002920 ORTHO05D003118 7.5e-137 491.5 577 49.7
CDE07G0230 Ceratophyllum demersum HOM05D002920 ORTHO05D003118 2.8e-136 489.6 478 55.9
Hund26821 Selenicereus undatus HOM05D002920 ORTHO05D003118 4.0e-130 469.2 531 49.0
Lalb_Chr10g0102771 Lupinus albus HOM05D002920 ORTHO05D003118 3.5e-126 456.1 478 51.3
MD08G1202500 Malus domestica HOM05D002920 ORTHO05D003118 2.9e-125 453.0 419 58.2
Rhsim06G0070200 Rhododendron simsii HOM05D002920 ORTHO05D003118 2.9e-125 453.0 509 51.1
LjContig00408g0017356 Lotus japonicus HOM05D002920 ORTHO05D003118 8.6e-125 451.4 477 50.1
ATR0767G155 Amborella trichopoda HOM05D002920 ORTHO05D003118 2.1e-123 446.8 504 48.8
Nn7g36727 Nelumbo nucifera HOM05D002920 ORTHO05D003118 2.8e-123 446.4 484 51.0
Nitab4.5_0005065g0010 Nicotiana tabacum HOM05D002920 ORTHO05D003118 4.7e-123 445.7 452 53.8
CAN.G1104.6 Capsicum annuum HOM05D002920 ORTHO05D003118 1.0e-122 444.5 374 63.4
Glyma.02G215800 Glycine max HOM05D002920 ORTHO05D003118 4.4e-121 439.1 481 48.6
Duzib041G0528 Durio zibethinus HOM05D002920 ORTHO05D003118 1.3e-117 427.6 484 49.8
Psat2g064080 Pisum sativum HOM05D002920 ORTHO05D003118 3.6e-115 419.5 484 48.1
HanXRQChr14g0447811 Helianthus annuus HOM05D002920 ORTHO05D003118 6.4e-112 408.7 487 49.1
HPP92_024863 Vanilla planifolia HOM05D002920 ORTHO05D003118 4.6e-110 402.5 488 44.9
ECA232G1296 Erigeron canadensis HOM05D002920 ORTHO05D003118 3.9e-109 399.4 480 46.9
Gorai.009G279000 Gossypium raimondii HOM05D002920 ORTHO05D003118 8.6e-109 398.3 506 46.2
Medtr5g066650 Medicago truncatula HOM05D002920 ORTHO05D003118 1.9e-108 397.1 459 46.4
Gohir.D05G266900 Gossypium hirsutum HOM05D002920 ORTHO05D003118 2.5e-108 396.7 506 46.0
unitig_578.g16182 Utricularia gibba HOM05D002920 ORTHO05D003118 1.7e-104 384.0 494 46.6
Eucgr.F00435 Eucalyptus grandis HOM05D002920 ORTHO05D003118 3.7e-104 382.9 347 57.6
Haze_22482 Corylus avellana HOM05D002920 ORTHO05D003118 7.1e-103 378.6 414 52.7
TPR.G30876 Trifolium pratense HOM05D002920 ORTHO05D003118 7.1e-103 378.6 489 43.6
Thhalv10000004m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 2.1e-102 377.1 473 44.0
CARHR259160 Cardamine hirsuta HOM05D002920 ORTHO05D003118 3.5e-102 376.3 476 44.3
AL8G23560 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 4.6e-102 375.9 476 43.3
AT5G49680 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 6.6e-101 372.1 476 43.3
Sp4g01560 Schrenkiella parvula HOM05D002920 ORTHO05D003118 1.1e-100 371.3 465 42.8
THA.LOC104817630 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 3.3e-100 369.8 477 44.2
TPR.G26343 Trifolium pratense HOM05D002920 ORTHO05D003118 4.7e-99 365.9 464 44.0
arahy.Tifrunner.gnm1.ann1.GN9VME Arachis hypogaea HOM05D002920 ORTHO05D003118 6.8e-98 362.1 522 40.0
arahy.Tifrunner.gnm1.ann1.LW385E Arachis hypogaea HOM05D002920 ORTHO05D003118 8.9e-98 361.7 514 40.9
Carub.0008s0955 Capsella rubella HOM05D002920 ORTHO05D003118 8.4e-96 355.1 475 42.7
Aa31LG4G11400 Aethionema arabicum HOM05D002920 ORTHO05D003118 3.5e-94 349.7 477 42.1
Phvul.008G183000 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 1.7e-93 347.4 488 42.4
vmacro04640 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 2.4e-90 337.0 301 61.1
BolC4t26752H Brassica oleracea HOM05D002920 ORTHO05D003118 7.6e-89 332.0 466 40.6
A04p17040 Brassica napus HOM05D002920 ORTHO05D003118 4.9e-88 329.3 468 40.4
BraA04t17332Z Brassica rapa HOM05D002920 ORTHO05D003118 6.4e-88 328.9 465 40.2
C04p51730 Brassica napus HOM05D002920 ORTHO05D003118 2.1e-86 323.9 468 39.5
Actinidia29660 Actinidia chinensis HOM05D002920 ORTHO05D003118 3.8e-72 276.6 227 66.5
Manes.05G189400 Manihot esculenta HOM05D002920 ORTHO05D003118 3.8e-72 276.6 258 52.7
RcHm_v2.0_Chr7g0235031 Rosa chinensis HOM05D002920 ORTHO05D003118 1.9e-71 274.2 243 62.1
Glyma.04G096600 Glycine max HOM05D002920 ORTHO05D003118 1.3e-69 268.1 233 57.5
DCAR_032088 Daucus carota HOM05D002920 ORTHO05D003118 4.0e-66 256.5 260 52.3
SMO116G0207 Selaginella moellendorffii HOM05D002920 ORTHO05D003118 3.2e-63 246.9 476 33.4
Pp3c12_12980 Physcomitrium patens HOM05D002920 ORTHO05D003118 1.2e-62 245.0 541 31.6
VMungo0647G0360 Vigna mungo HOM05D002920 ORTHO05D003118 1.1e-58 231.9 329 39.5
RcHm_v2.0_Chr7g0235041 Rosa chinensis HOM05D002920 ORTHO05D003118 4.1e-58 229.9 180 63.3
A08p06260 Brassica napus HOM05D002920 ORTHO05D003118 2.0e-57 227.6 479 34.0
AagrBONN_evm.TU.Sc2ySwM_344.1562 Anthoceros agrestis HOM05D002920 ORTHO05D003118 8.5e-56 222.2 499 31.9
BraA08t32630Z Brassica rapa HOM05D002920 ORTHO05D003118 8.5e-56 222.2 467 33.6
C08p07090 Brassica napus HOM05D002920 ORTHO05D003118 2.5e-55 220.7 481 32.8
BolC8t47553H Brassica oleracea HOM05D002920 ORTHO05D003118 2.5e-55 220.7 481 32.8
Cpa.g.sc21.37 Carica papaya HOM05D002920 ORTHO05D003118 2.5e-55 220.7 163 63.2
Glyma.04G096666 Glycine max HOM05D002920 ORTHO05D003118 7.2e-55 219.2 148 75.0
CSS0043684 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 8.7e-53 212.2 158 63.9
BcaC07g37279 Brassica carinata HOM05D002920 ORTHO05D003118 2.2e-48 197.6 444 31.8
BcaC02g08647 Brassica carinata HOM05D002920 ORTHO05D003118 2.7e-46 190.7 317 37.9
vmacro21354 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 4.1e-42 176.8 166 53.0
SHI01002 Sapria himalayana HOM05D002920 ORTHO05D003118 9.1e-42 175.6 338 36.7
Mapoly0099s0021 Marchantia polymorpha HOM05D002920 ORTHO05D003118 2.6e-41 174.1 507 28.8
TAR381G0245 Trochodendron aralioides HOM05D002920 ORTHO05D003118 2.5e-39 167.5 126 62.7
Cpa.g.sc21.38 Carica papaya HOM05D002920 ORTHO05D003118 5.2e-37 159.8 163 53.4
Hund17268 Selenicereus undatus HOM05D002920 ORTHO05D003118 8.8e-37 159.1 298 34.2
Lsat_1_v5_gn_9_80721 Lactuca sativa HOM05D002920 ORTHO05D003118 1.5e-36 158.3 152 55.9
SEGI_25281 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 9.7e-36 155.6 148 54.7
SEGI_34078 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 1.7e-35 154.8 258 39.9
Sp1g33855 Schrenkiella parvula HOM05D002920 ORTHO05D003118 2.8e-35 154.1 367 31.3
MD08G1208100 Malus domestica HOM05D002920 ORTHO05D003118 3.7e-35 153.7 118 66.9
Psat2g086080 Pisum sativum HOM05D002920 ORTHO05D003118 9.4e-31 139.0 132 55.3
HPP92_018503 Vanilla planifolia HOM05D002920 ORTHO05D003118 5.2e-29 133.3 209 38.8
HPP92_018504 Vanilla planifolia HOM05D002920 ORTHO05D003118 6.3e-27 126.3 142 47.9
vmacro21356 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 1.2e-25 122.1 87 72.4
Hund17266 Selenicereus undatus HOM05D002920 ORTHO05D003118 2.0e-25 121.3 127 51.2
Zm00001eb394580 Zea mays HOM05D002920 ORTHO05D003118 1.0e-24 119.0 166 38.0
Os03g0681201 Oryza sativa ssp. japonica HOM05D002920 ORTHO05D003118 3.8e-24 117.1 91 64.8
vmacro21355 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 1.5e-23 115.2 181 39.8
CBR_g40338 Chara braunii HOM05D002920 ORTHO05D003118 1.0e-21 109.0 278 29.5
Psat3g154520 Pisum sativum HOM05D004511 ORTHO05D005348 5.0e-16 90.1 97 46.4
SEGI_17287 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 1.0e-13 82.4 84 48.8
Ca_05461_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 2.3e-13 81.3 80 46.2
Actinidia29661 Actinidia chinensis HOM05D002920 ORTHO05D003118 3.0e-13 80.9 62 66.1
SHI01001 Sapria himalayana HOM05D000105 ORTHO05D003118 4.9e-11 73.6 78 47.4
CAN.G1104.5 Capsicum annuum HOM05D002920 ORTHO05D003118 2.4e-10 71.2 46 69.6
Zm00001eb051870 Zea mays HOM05D002920 ORTHO05D003118 9.2e-10 69.3 65 50.8
CSS0046161 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 2.7e-09 67.8 75 50.7
SHI00998 Sapria himalayana HOM05D002920 ORTHO05D000002 5.9e-09 66.6 95 40.0
Hund17267 Selenicereus undatus HOM05D002920 ORTHO05D003118 2.3e-08 64.7 91 37.4
SHI01003 Sapria himalayana HOM05D002876 ORTHO05D003118 5.6e-07 60.1 44 61.4


User provided reference genes

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