Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 5.4e-111 404.4 221 100.0
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 2.3e-109 399.1 221 98.2
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.3e-104 383.3 224 93.8
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 3.2e-95 352.1 220 85.9
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 6.0e-94 347.8 221 85.5
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 4.2e-79 298.5 231 72.7
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 4.6e-78 295.0 219 75.3
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 3.3e-68 262.3 214 69.6
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 9.1e-66 254.2 214 65.9
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 4.5e-65 251.9 214 65.9
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 5.0e-64 248.4 214 64.0
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 1.9e-63 246.5 214 64.0
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 2.5e-63 246.1 212 67.0
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 5.5e-63 245.0 213 64.3
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 5.5e-63 245.0 214 64.0
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 7.2e-63 244.6 214 63.6
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 9.4e-63 244.2 216 63.9
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 9.4e-63 244.2 215 64.7
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 8.0e-62 241.1 214 63.1
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 1.8e-61 240.0 215 61.9
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 2.0e-60 236.5 210 62.9
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 4.4e-60 235.3 217 64.5
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 9.7e-60 234.2 210 62.9
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 2.4e-58 229.6 210 62.4
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 2.4e-58 229.6 214 59.8
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 5.9e-57 224.9 200 64.5
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 2.9e-56 222.6 216 59.7
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 3.8e-56 222.2 223 56.5
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 6.5e-56 221.5 213 59.6
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 6.5e-56 221.5 207 62.3
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 8.5e-56 221.1 220 57.3
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 1.1e-55 220.7 213 59.6
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 1.1e-55 220.7 215 59.1
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 1.5e-55 220.3 215 59.1
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 1.9e-55 219.9 210 61.0
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 2.5e-55 219.5 213 59.2
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 2.5e-55 219.5 217 60.8
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 4.2e-55 218.8 211 59.2
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 4.2e-55 218.8 213 59.6
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 7.2e-55 218.0 210 60.0
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 2.1e-54 216.5 211 59.2
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 1.8e-53 213.4 220 55.5
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 2.3e-53 213.0 213 59.2
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 8.8e-53 211.1 183 66.1
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 1.2e-52 210.7 207 58.0
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 4.4e-52 208.8 211 55.5
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 5.7e-52 208.4 217 54.4
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 2.2e-51 206.5 214 56.1
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 2.2e-51 206.5 223 54.3
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 2.8e-51 206.1 213 55.9
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 1.1e-50 204.1 217 52.5
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 3.1e-50 202.6 213 56.8
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 4.1e-50 202.2 211 56.4
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 5.4e-50 201.8 216 54.6
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 7.0e-50 201.4 213 54.5
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 7.0e-50 201.4 217 51.6
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 7.0e-50 201.4 208 55.3
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 9.1e-50 201.1 211 55.9
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 1.2e-49 200.7 219 54.8
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 2.7e-49 199.5 202 57.9
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 3.5e-49 199.1 213 54.9
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 7.7e-49 198.0 210 52.4
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 1.3e-48 197.2 203 54.7
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 2.9e-48 196.1 209 54.5
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 5.5e-47 191.8 214 52.3
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 7.2e-47 191.4 210 55.7
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 7.2e-47 191.4 216 50.9
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 7.2e-47 191.4 216 51.4
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 1.6e-46 190.3 215 53.5
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 3.6e-46 189.1 209 50.2
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 1.8e-45 186.8 212 51.9
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 5.2e-45 185.3 225 48.4
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 6.8e-45 184.9 211 51.7
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.2e-44 184.1 210 53.3
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 1.5e-44 183.7 210 51.4
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 1.5e-44 183.7 211 51.2
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 2.0e-44 183.3 210 53.3
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 2.6e-44 183.0 216 51.9
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 4.4e-44 182.2 211 51.7
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 7.5e-44 181.4 211 50.7
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 1.7e-43 180.3 216 50.5
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 1.7e-43 180.3 213 51.2
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 2.8e-43 179.5 212 52.8
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 6.3e-43 178.3 212 52.4
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 8.3e-43 177.9 212 51.9
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 1.1e-42 177.6 213 50.7
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 3.1e-42 176.0 212 49.1
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 4.1e-42 175.6 212 49.5
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 5.9e-41 171.8 212 47.2
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 7.7e-41 171.4 210 48.6
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 2.3e-40 169.9 210 48.6
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 3.8e-40 169.1 213 46.9
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 6.6e-40 168.3 221 48.4
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 2.5e-39 166.4 213 47.4
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 7.3e-39 164.9 206 47.6
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 1.2e-38 164.1 209 47.8
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 2.1e-38 163.3 212 46.7
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 2.1e-38 163.3 209 47.4
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 3.6e-38 162.5 199 49.2
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 8.0e-38 161.4 216 47.7
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 2.3e-37 159.8 214 46.7
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 3.0e-37 159.5 213 45.5
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 3.0e-37 159.5 200 47.5
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 5.2e-37 158.7 165 55.2
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 6.8e-37 158.3 224 46.4
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 3.4e-36 156.0 207 44.9
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 3.4e-36 156.0 219 45.7
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 4.4e-36 155.6 206 46.1
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.7e-35 153.7 219 43.4
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 1.1e-34 151.0 210 44.3
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.8e-34 150.2 215 44.7
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 5.4e-34 148.7 216 41.2
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 9.2e-34 147.9 218 42.7
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 9.2e-34 147.9 215 44.2
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 1.2e-33 147.5 221 43.9
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 1.6e-33 147.1 213 43.7
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.6e-33 147.1 214 44.4
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 2.7e-33 146.4 208 44.7
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 7.8e-33 144.8 199 45.2
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 7.8e-33 144.8 208 45.7
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.0e-32 144.4 142 57.7
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 3.0e-32 142.9 214 43.0
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 8.6e-32 141.4 201 44.3
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.1e-31 141.0 190 47.4
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 4.7e-30 135.6 203 43.8
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 6.2e-30 135.2 207 42.5
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.4e-29 134.0 142 54.9
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 3.1e-29 132.9 193 45.1
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 3.1e-29 132.9 193 45.1
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 4.0e-29 132.5 193 45.6
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 1.2e-28 131.0 193 45.1
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 2.0e-28 130.2 198 43.9
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 2.6e-28 129.8 217 39.2
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 9.8e-28 127.9 197 42.6
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 2.2e-27 126.7 187 44.9
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.4e-26 124.0 200 42.5
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 9.2e-26 121.3 216 40.7
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 9.2e-26 121.3 216 40.7
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 2.0e-25 120.2 139 50.4
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 2.0e-25 120.2 142 49.3
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 2.7e-25 119.8 115 59.1
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 7.8e-25 118.2 214 38.8
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 3.9e-24 115.9 213 38.0
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 3.9e-24 115.9 220 36.8
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 6.6e-24 115.2 209 37.8
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 4.3e-23 112.5 215 37.7
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 2.6e-20 103.2 187 39.6
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 3.4e-20 102.8 206 37.4
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 1.1e-18 97.8 118 50.0
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 9.2e-18 94.7 138 42.0
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 1.2e-17 94.4 208 35.1
CSS0037477 Camellia sinensis var. sinensis HOM05D000739 ORTHO05D109703 2.9e-11 73.2 104 45.2
Phvul.008G182701 Phaseolus vulgaris HOM05D004648 ORTHO05D307582 1.4e-10 70.9 99 44.4


User provided reference genes

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