Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 2.7e-139 498.8 279 100.0
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 2.8e-136 488.8 279 94.6
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 1.5e-129 466.5 279 94.3
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 1.1e-116 423.7 277 83.0
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 1.1e-113 413.7 277 84.1
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 2.2e-109 399.4 264 81.8
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 5.8e-94 348.2 270 73.7
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 1.9e-76 290.0 260 63.1
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 1.1e-73 280.8 270 62.2
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 7.4e-73 278.1 263 60.5
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 3.2e-68 262.7 260 59.2
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 5.5e-68 261.9 264 59.1
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 1.4e-66 257.3 266 57.9
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 3.9e-66 255.8 262 58.4
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 5.2e-66 255.4 241 62.7
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 8.8e-66 254.6 277 53.8
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 1.1e-65 254.2 260 58.1
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 1.5e-65 253.8 277 55.2
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 2.2e-64 250.0 259 58.7
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 6.3e-64 248.4 271 56.8
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 8.2e-64 248.1 263 57.0
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 9.1e-63 244.6 263 56.3
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 1.2e-62 244.2 237 61.2
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 2.0e-62 243.4 247 61.1
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 4.5e-62 242.3 253 58.1
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 3.8e-61 239.2 264 54.9
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 1.1e-60 237.7 253 55.3
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 1.2e-59 234.2 259 56.0
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 2.7e-59 233.0 268 51.5
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 8.0e-59 231.5 273 52.4
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 1.4e-58 230.7 237 56.5
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 2.3e-58 229.9 247 61.1
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 3.0e-58 229.6 247 57.1
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 3.0e-58 229.6 251 53.0
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 4.0e-58 229.2 237 56.5
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 4.0e-58 229.2 244 58.6
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 6.7e-58 228.4 268 51.5
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 4.4e-57 225.7 271 52.4
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 1.7e-56 223.8 256 55.1
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 1.7e-56 223.8 265 54.3
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 2.8e-56 223.0 265 50.2
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 6.3e-56 221.9 265 53.2
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 6.3e-56 221.9 245 57.6
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 6.3e-56 221.9 237 54.9
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 1.1e-55 221.1 256 54.3
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 1.4e-55 220.7 263 53.2
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 1.8e-55 220.3 236 53.8
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 2.4e-55 219.9 244 58.2
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 4.1e-55 219.2 269 52.4
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 7.0e-55 218.4 245 51.8
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 9.1e-55 218.0 240 55.4
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 9.1e-55 218.0 242 53.7
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 2.0e-54 216.9 264 53.4
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 2.0e-54 216.9 266 53.0
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 2.0e-54 216.9 238 55.5
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 2.0e-54 216.9 266 53.8
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 2.7e-54 216.5 267 50.6
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 3.5e-54 216.1 244 53.7
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 5.9e-54 215.3 255 52.5
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 7.7e-54 214.9 244 51.2
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 8.5e-53 211.5 266 49.6
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 1.1e-52 211.1 235 54.0
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.5e-52 210.7 261 52.9
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 1.9e-52 210.3 245 56.3
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 9.4e-52 208.0 263 51.7
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 1.2e-51 207.6 315 45.7
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 4.7e-51 205.7 231 53.2
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 8.0e-51 204.9 235 53.2
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.0e-50 204.5 261 50.2
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 2.3e-50 203.4 245 52.7
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 3.0e-50 203.0 256 50.4
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 4.0e-50 202.6 256 50.0
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 1.2e-49 201.1 185 64.3
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 4.4e-49 199.1 250 50.8
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 2.2e-48 196.8 246 50.8
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 2.2e-48 196.8 189 63.0
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 1.4e-47 194.1 246 50.0
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 3.1e-47 193.0 229 51.5
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 9.1e-47 191.4 167 65.3
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 1.2e-46 191.0 251 47.4
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 5.9e-46 188.7 280 45.4
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 5.9e-46 188.7 280 45.7
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 1.0e-45 188.0 262 45.4
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 1.0e-45 188.0 232 50.9
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 1.3e-45 187.6 280 45.4
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 1.5e-44 184.1 307 44.0
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 9.5e-44 181.4 248 48.0
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 1.2e-43 181.0 264 47.3
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 2.8e-43 179.9 233 47.6
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 3.6e-43 179.5 230 49.6
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 4.7e-43 179.1 240 46.7
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 1.8e-42 177.2 230 49.1
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 1.8e-42 177.2 230 49.1
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 3.0e-42 176.4 234 46.6
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 3.0e-42 176.4 245 46.9
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 3.0e-42 176.4 245 46.9
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 6.8e-42 175.3 252 44.4
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 8.8e-42 174.9 245 46.9
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 1.2e-41 174.5 230 49.1
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 2.6e-41 173.3 238 48.3
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 3.4e-41 172.9 235 47.7
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 3.4e-41 172.9 230 48.7
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 4.4e-41 172.6 242 45.0
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 9.8e-41 171.4 236 48.7
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 1.3e-40 171.0 243 44.4
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 1.7e-40 170.6 260 44.2
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 6.3e-40 168.7 237 47.3
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 1.8e-39 167.2 245 43.7
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 3.8e-37 159.5 234 44.0
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 6.6e-37 158.7 250 42.8
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 1.5e-36 157.5 123 69.1
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 8.3e-32 141.7 276 38.8
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 1.8e-31 140.6 239 39.7
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 9.2e-31 138.3 182 51.6
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 3.3e-28 129.8 133 57.1
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 6.4e-24 115.5 165 45.5
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 2.4e-23 113.6 141 50.4
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 6.0e-22 109.0 144 48.6
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 1.1e-20 104.8 258 33.3
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 2.1e-19 100.5 133 45.9
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 8.1e-19 98.6 239 33.5
Actinidia31584 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.5e-17 94.4 224 36.2
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 8.6e-13 78.6 142 40.1
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 1.4e-10 71.2 229 30.6
GSVIVG01017622001 Vitis vinifera HOM05D005991 ORTHO05D007408 2.4e-07 60.5 64 45.3
Sabra10G0116500 Salix brachista HOM05D005991 ORTHO05D007408 3.2e-07 60.1 98 38.8
GSVIVG01017610001 Vitis vinifera HOM05D005991 ORTHO05D007408 3.2e-07 60.1 140 35.7


User provided reference genes

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