Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 5.5e-176 620.9 329 100.0
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 3.3e-173 611.7 329 97.9
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 8.0e-159 563.9 331 89.4
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 4.4e-157 558.1 332 91.0
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 4.5e-154 548.1 329 87.2
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 8.0e-151 537.3 329 86.6
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 3.0e-113 412.5 337 71.2
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.1e-112 410.6 334 66.5
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 6.2e-111 404.8 332 65.4
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.4e-110 402.9 332 65.4
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 5.2e-110 401.7 325 66.8
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 1.4e-107 393.7 330 63.9
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 9.3e-107 391.0 328 62.5
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 3.5e-106 389.0 326 65.0
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 6.6e-105 384.8 334 62.3
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 3.3e-104 382.5 331 63.7
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 3.6e-103 379.0 330 62.1
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 8.1e-103 377.9 323 62.5
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.8e-102 376.7 324 61.7
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 3.1e-102 375.9 332 60.8
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 5.3e-102 375.2 330 62.4
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.2e-100 369.8 324 61.1
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.9e-100 369.4 324 60.8
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 3.8e-100 369.0 384 55.2
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 3.8e-100 369.0 332 58.7
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.4e-99 367.1 332 61.7
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 2.4e-99 366.3 332 60.2
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.6e-98 363.6 330 61.2
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.8e-97 360.1 323 60.7
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.8e-97 360.1 331 60.1
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.3e-97 359.8 330 58.8
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 3.9e-97 359.0 332 60.5
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 8.7e-97 357.8 330 58.5
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 5.6e-96 355.1 331 59.2
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.3e-95 354.0 333 60.4
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.6e-95 353.6 330 57.9
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.8e-94 350.1 330 59.1
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.8e-94 350.1 330 59.1
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 5.3e-94 348.6 330 57.9
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 2.0e-93 346.7 332 58.1
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 4.5e-93 345.5 332 57.2
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 1.1e-91 340.9 332 56.0
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 2.4e-91 339.7 326 56.7
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 3.2e-91 339.3 329 57.8
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 6.0e-90 335.1 331 58.0
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 1.1e-88 330.9 333 55.9
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 3.3e-88 329.3 325 54.8
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 2.8e-87 326.2 339 54.3
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 4.8e-87 325.5 337 56.1
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 3.4e-85 319.3 332 52.7
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 1.0e-84 317.8 329 56.2
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.3e-84 317.4 333 54.4
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 8.4e-84 314.7 338 54.4
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 1.1e-83 314.3 337 53.7
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 1.4e-83 313.9 332 54.8
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 1.9e-83 313.5 332 51.5
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 1.9e-83 313.5 331 55.6
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 2.5e-83 313.2 388 48.7
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 4.2e-83 312.4 332 54.5
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 7.1e-83 311.6 332 54.2
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 2.1e-82 310.1 339 55.5
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 3.5e-82 309.3 332 52.7
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 1.8e-81 307.0 338 53.6
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 2.3e-81 306.6 332 53.3
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 2.3e-81 306.6 338 53.6
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 3.9e-81 305.8 267 62.9
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 1.1e-80 304.3 319 55.5
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.3e-80 302.8 332 51.5
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 3.7e-79 299.3 331 51.1
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.8e-78 297.0 325 54.2
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 3.1e-78 296.2 332 52.7
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 5.3e-78 295.4 332 52.7
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 5.3e-78 295.4 319 54.5
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 1.5e-77 293.9 388 45.9
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 2.6e-77 293.1 404 45.0
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 1.7e-76 290.4 332 50.0
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.4e-75 287.3 278 56.1
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 5.5e-75 285.4 332 48.5
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 7.2e-75 285.0 278 55.4
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 6.1e-74 282.0 305 53.1
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.3e-73 280.0 329 50.8
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 6.7e-73 278.5 333 49.5
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 8.8e-73 278.1 332 50.0
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 1.9e-72 276.9 325 49.2
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.7e-71 273.9 332 47.3
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 2.2e-71 273.5 332 47.3
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 8.2e-71 271.6 275 54.9
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.5e-69 267.3 389 44.5
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 1.3e-68 264.2 327 49.8
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 2.2e-68 263.5 323 47.1
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 2.2e-68 263.5 329 49.5
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 2.2e-68 263.5 324 50.9
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 5.0e-68 262.3 333 47.4
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 5.5e-67 258.8 334 47.9
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 1.0e-65 254.6 284 48.9
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.0e-65 254.6 321 47.4
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 8.8e-65 251.5 321 49.8
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 4.4e-64 249.2 264 51.9
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 4.4e-64 249.2 334 48.2
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 2.4e-62 243.4 373 43.2
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 2.0e-61 240.4 341 44.6
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 2.6e-61 240.0 337 46.9
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 5.0e-60 235.7 339 45.4
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 6.5e-60 235.3 328 44.5
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.6e-58 230.7 389 39.6
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 4.7e-58 229.2 354 42.1
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 8.0e-58 228.4 309 46.0
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 8.8e-57 224.9 364 40.9
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 3.3e-56 223.0 257 49.0
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.3e-55 221.1 325 42.5
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.7e-55 220.7 310 45.8
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 2.8e-55 219.9 308 44.8
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 1.1e-54 218.0 330 43.0
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 2.4e-54 216.9 329 43.5
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 2.4e-54 216.9 329 43.5
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 2.6e-53 213.4 332 42.8
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 4.5e-53 212.6 256 47.7
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.3e-52 211.1 330 40.9
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 3.8e-52 209.5 305 42.3
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 1.1e-51 208.0 302 42.1
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 2.5e-51 206.8 331 40.8
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 7.2e-51 205.3 333 40.2
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 2.7e-50 203.4 360 38.6
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 2.7e-50 203.4 155 66.5
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 2.3e-49 200.3 330 41.8
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 2.3e-49 200.3 197 53.8
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 1.2e-48 198.0 297 39.1
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 2.0e-48 197.2 292 40.4
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 5.7e-48 195.7 294 41.2
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.1e-46 191.4 311 40.8
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 5.3e-46 189.1 294 40.8
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 2.7e-45 186.8 302 39.1
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 4.5e-45 186.0 173 57.2
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 7.7e-45 185.3 304 40.1
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 3.2e-43 179.9 210 49.0
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 4.2e-43 179.5 315 39.4
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 2.1e-42 177.2 146 63.7
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 6.1e-42 175.6 176 56.8
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 3.4e-40 169.9 152 61.8
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.4e-40 169.5 279 41.9
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.7e-39 166.4 372 33.3
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.0e-37 160.6 214 46.3
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.0e-37 160.6 142 59.2
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 3.5e-37 159.8 312 35.9
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 8.6e-36 155.2 151 58.9
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 3.6e-34 149.8 218 41.7
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 4.7e-34 149.4 159 47.8
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 4.7e-34 149.4 328 35.4
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 3.0e-33 146.7 263 41.1
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 6.8e-33 145.6 159 50.9
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 8.9e-33 145.2 159 50.9
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 4.4e-32 142.9 267 35.6
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 7.0e-30 135.6 133 58.6
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.2e-29 134.8 374 29.9
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 3.5e-29 133.3 134 59.0
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 7.8e-29 132.1 233 40.8
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 2.3e-28 130.6 112 61.6
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 3.8e-28 129.8 194 45.9
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 3.3e-27 126.7 294 33.3
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 3.6e-26 123.2 130 53.1
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 5.4e-22 109.4 262 31.3
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 1.7e-20 104.4 94 56.4
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 5.6e-19 99.4 221 35.7
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 5.6e-19 99.4 221 35.7
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 9.5e-19 98.6 324 29.9
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 1.8e-17 94.4 212 36.8
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 1.2e-16 91.7 204 34.8
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 4.4e-16 89.7 214 29.0
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 4.4e-16 89.7 48 81.2
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 5.8e-16 89.4 274 30.3
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 2.2e-15 87.4 195 31.3
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 6.4e-15 85.9 138 37.7
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 6.4e-15 85.9 138 37.7
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 6.4e-15 85.9 79 57.0
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 5.1e-12 76.3 84 51.2
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 3.3e-11 73.6 100 55.0
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 1.8e-09 67.8 60 61.7
MBI12_g20562_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.2e-08 65.1 50 64.0
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 3.7e-07 60.1 54 50.0
RcHm_v2.0_Chr5g0049341 Rosa chinensis HOM05D003707 ORTHO05D004309 1.4e-06 58.2 89 43.8
MBI07_g40370_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.2e-06 57.0 77 44.2


User provided reference genes

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