Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 7.9e-123 444.1 282 100.0
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 4.8e-120 434.9 282 98.6
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 6.5e-117 424.5 282 96.5
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 8.2e-112 407.5 282 75.2
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 1.3e-101 373.6 204 90.7
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 1.6e-94 350.1 284 67.3
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 2.6e-94 349.4 284 69.0
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 8.3e-88 327.8 203 79.3
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 1.0e-85 320.9 180 85.6
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 2.2e-85 319.7 208 77.4
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 2.2e-85 319.7 180 85.6
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 3.8e-85 318.9 181 84.5
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 5.0e-85 318.5 187 81.3
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 6.5e-85 318.2 183 83.1
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 1.9e-84 316.6 220 73.6
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 4.2e-84 315.5 168 88.1
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 4.2e-84 315.5 204 75.5
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 7.2e-84 314.7 208 73.6
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 7.2e-84 314.7 180 84.4
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 9.4e-84 314.3 211 73.5
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 9.4e-84 314.3 181 83.4
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 2.1e-83 313.2 182 80.8
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 2.7e-83 312.8 179 84.9
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 2.7e-83 312.8 182 80.8
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 3.6e-83 312.4 180 82.2
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 4.7e-83 312.0 180 82.8
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 6.1e-83 311.6 213 74.6
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 8.0e-83 311.2 183 82.0
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 8.0e-83 311.2 178 83.7
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 1.0e-82 310.8 181 82.3
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 1.8e-82 310.1 232 67.7
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 1.8e-82 310.1 186 79.6
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 4.0e-82 308.9 180 80.6
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 5.2e-82 308.5 178 83.1
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 1.5e-81 307.0 180 81.1
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 2.0e-81 306.6 185 77.8
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 2.0e-81 306.6 282 66.0
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 3.4e-81 305.8 241 65.6
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 5.7e-81 305.1 240 65.4
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 5.7e-81 305.1 182 78.6
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 5.7e-81 305.1 182 78.6
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 5.7e-81 305.1 184 78.3
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 9.8e-81 304.3 179 79.3
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 1.3e-80 303.9 282 63.8
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 1.7e-80 303.5 183 78.1
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 1.7e-80 303.5 181 80.1
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 4.9e-80 302.0 180 77.8
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.8e-79 300.1 184 77.7
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 5.4e-79 298.5 190 75.3
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 5.4e-79 298.5 178 80.9
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 7.0e-79 298.1 181 79.6
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 9.1e-79 297.7 179 81.0
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 1.2e-78 297.4 183 76.0
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 1.6e-78 297.0 183 76.0
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 1.6e-78 297.0 184 76.1
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 2.0e-78 296.6 184 75.5
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 4.5e-78 295.4 184 77.2
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 7.7e-78 294.7 179 76.5
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 1.0e-77 294.3 183 76.0
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 1.0e-77 294.3 178 77.5
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 2.3e-77 293.1 184 74.5
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 2.9e-77 292.7 202 69.3
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 6.6e-77 291.6 168 80.4
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 1.5e-76 290.4 181 76.2
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 2.5e-76 289.7 184 73.9
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 2.5e-76 289.7 235 61.7
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 4.2e-76 288.9 281 55.9
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 2.1e-75 286.6 184 72.8
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 2.1e-75 286.6 184 72.8
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 8.0e-75 284.6 263 59.7
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.8e-74 283.5 170 79.4
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 1.8e-74 283.5 234 64.5
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.3e-74 283.1 169 79.9
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 3.0e-74 282.7 184 71.7
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 5.2e-74 282.0 213 68.5
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 6.8e-74 281.6 188 73.9
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 8.9e-74 281.2 210 66.7
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.7e-72 276.9 215 65.6
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 5.4e-71 271.9 148 83.8
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 2.7e-70 269.6 231 63.6
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 5.9e-70 268.5 212 64.6
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 5.0e-69 265.4 145 83.4
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 1.5e-68 263.8 232 57.8
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 1.9e-68 263.5 169 71.0
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 7.3e-68 261.5 150 80.7
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 2.3e-66 256.5 226 61.1
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 8.9e-66 254.6 164 76.2
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 2.0e-65 253.4 232 59.9
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 1.3e-64 250.8 196 64.8
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 1.7e-64 250.4 180 65.0
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 3.3e-60 236.1 200 60.5
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 4.3e-60 235.7 229 55.0
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 6.2e-59 231.9 320 45.6
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 1.1e-58 231.1 191 67.5
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 4.0e-58 229.2 190 67.4
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 5.2e-58 228.8 178 66.9
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 4.4e-57 225.7 228 54.4
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 3.7e-56 222.6 131 79.4
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 1.4e-55 220.7 125 82.4
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 2.3e-53 213.4 367 38.1
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 1.9e-52 210.3 154 68.8
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 1.8e-50 203.8 115 84.3
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 4.4e-49 199.1 193 52.8
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 8.6e-45 184.9 102 85.3
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 2.8e-43 179.9 98 85.7
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 3.5e-38 162.9 145 57.2
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 6.6e-37 158.7 114 63.2
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 2.5e-36 156.8 145 59.3
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 2.4e-31 140.2 81 80.2
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 5.5e-23 112.5 107 56.1
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 4.0e-18 96.3 99 53.5
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 2.6e-17 93.6 112 48.2
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 4.6e-14 82.8 61 63.9
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 7.6e-09 65.5 57 66.7
Ca_23889_v3 Cicer arietinum L. HOM05D006852 ORTHO05D008585 5.5e-07 59.3 29 89.7
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 9.3e-07 58.5 34 85.3


User provided reference genes

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