Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 0.0e+00 1639.4 893 100.0
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 0.0e+00 1343.6 830 86.4
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 0.0e+00 1242.6 828 82.5
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 0.0e+00 1177.9 830 78.6
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 0.0e+00 1146.7 830 78.3
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 1.8e-306 1055.8 830 69.2
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.7e-304 1049.3 826 71.7
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 5.5e-303 1044.3 829 70.2
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 2.7e-302 1042.0 830 68.4
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 2.3e-301 1038.9 834 71.1
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.6e-299 1032.7 847 69.4
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 1.7e-291 1006.1 837 66.5
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 3.7e-291 1005.0 832 67.7
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 1.2e-289 1000.0 825 67.6
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 5.0e-288 994.6 834 66.4
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 8.5e-288 993.8 833 66.4
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 6.1e-286 987.6 833 65.8
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 1.4e-285 986.5 840 66.3
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 1.4e-285 986.5 835 65.0
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 2.6e-284 982.2 834 64.7
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.3e-284 981.9 831 64.5
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 3.7e-283 978.4 839 65.7
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 2.4e-282 975.7 838 63.8
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.4e-282 975.7 841 63.5
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 2.4e-282 975.7 832 64.5
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 2.2e-280 969.1 832 64.5
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 3.2e-279 965.3 832 62.1
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 9.4e-279 963.8 862 63.2
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 1.1e-276 956.8 838 62.3
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 2.6e-276 955.7 834 63.3
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 9.7e-276 953.7 828 62.4
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 1.3e-275 953.4 836 62.4
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.7e-275 953.0 841 61.4
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 3.7e-275 951.8 835 61.8
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 3.7e-275 951.8 833 62.1
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 6.3e-275 951.0 837 64.9
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.4e-274 949.9 830 61.3
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 1.8e-274 949.5 830 62.4
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 2.4e-274 949.1 839 61.3
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 3.1e-274 948.7 835 61.7
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 3.1e-274 948.7 836 60.9
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 5.3e-274 948.0 836 61.8
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 1.2e-273 946.8 832 61.4
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 7.7e-273 944.1 831 62.5
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 1.3e-272 943.3 829 62.1
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.7e-272 943.0 835 61.0
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 1.7e-272 943.0 836 60.9
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 2.9e-272 942.2 841 61.7
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 8.5e-272 940.6 835 63.5
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 1.5e-271 939.9 834 62.7
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 3.6e-270 935.3 837 61.1
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 8.0e-270 934.1 839 60.9
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 1.0e-269 933.7 830 61.9
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 1.0e-269 933.7 839 61.3
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 3.0e-269 932.2 834 63.3
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 4.0e-269 931.8 836 60.2
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 2.0e-268 929.5 824 61.3
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 4.4e-268 928.3 835 60.1
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 1.1e-266 923.7 829 61.0
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 5.3e-266 921.4 829 62.5
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 2.0e-265 919.5 841 61.8
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 5.0e-264 914.8 831 60.2
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.3e-261 906.0 841 61.0
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 4.0e-261 905.2 836 61.0
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 5.2e-261 904.8 842 58.4
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 2.2e-259 899.4 921 56.4
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.1e-258 895.2 841 59.9
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 5.9e-257 891.3 843 61.3
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 5.5e-255 884.8 840 62.3
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 9.5e-255 884.0 832 62.4
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 1.2e-254 883.6 829 60.1
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 7.5e-252 874.4 873 57.6
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 2.8e-251 872.5 831 60.9
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.3e-248 863.6 783 61.7
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 8.9e-245 850.9 840 57.6
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 4.9e-243 845.1 825 56.8
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 1.7e-235 820.1 839 54.2
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 2.9e-235 819.3 840 55.2
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 2.7e-233 812.8 815 57.3
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 2.7e-233 812.8 815 57.3
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 3.5e-233 812.4 815 55.6
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 1.7e-232 810.1 815 56.9
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 3.0e-232 809.3 836 55.4
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 1.9e-231 806.6 854 52.8
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 2.5e-231 806.2 831 54.5
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 9.5e-231 804.3 812 57.9
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 9.5e-231 804.3 812 57.9
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 2.8e-230 802.7 829 54.2
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 8.1e-230 801.2 808 56.3
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 4.0e-229 798.9 811 54.9
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 5.2e-229 798.5 852 52.3
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 2.9e-227 792.7 835 55.1
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 6.6e-224 781.6 831 54.5
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 3.5e-217 759.2 832 52.4
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.1e-213 747.7 447 88.1
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 1.4e-213 747.3 837 50.8
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 1.1e-205 721.1 681 58.1
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 1.5e-204 717.2 804 50.6
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 1.4e-202 710.7 685 58.2
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 4.5e-196 689.1 593 60.7
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 1.3e-195 687.6 845 47.7
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 8.2e-190 668.3 601 62.7
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 7.9e-185 651.7 626 61.5
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.1e-184 649.0 558 61.1
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 3.5e-164 583.2 855 41.4
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 2.8e-150 537.0 287 99.3
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 5.4e-149 532.7 834 45.1
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.3e-144 517.3 504 61.7
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 6.3e-142 509.2 879 40.3
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 3.4e-135 486.9 826 40.7
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 5.9e-132 476.1 448 65.0
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 4.3e-130 469.9 376 65.4
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 5.6e-130 469.5 325 81.2
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 5.2e-120 436.4 387 61.0
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 2.8e-113 414.1 935 32.8
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.2e-113 412.9 302 70.2
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 2.6e-103 380.9 200 99.5
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 4.4e-103 380.2 427 51.1
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 8.4e-86 322.8 446 44.6
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 1.0e-83 315.8 285 66.3
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 4.0e-80 303.9 334 50.6
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 3.8e-78 297.4 239 66.9
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 6.5e-78 296.6 155 97.4
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.1e-77 295.8 236 66.9
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 7.9e-68 263.1 229 59.8
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 1.5e-66 258.8 820 30.4
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 6.5e-62 243.4 269 56.5
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 9.4e-61 239.6 214 59.8
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 6.1e-60 236.9 193 63.2
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 6.5e-54 216.9 149 70.5
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.6e-50 204.9 182 60.4
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.2e-44 186.0 176 71.0
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 1.8e-43 182.2 127 99.2
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 1.3e-41 176.0 205 51.2
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.2e-41 175.3 150 62.0
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 2.7e-39 168.3 170 57.6
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 5.2e-35 154.1 106 74.5
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 6.8e-35 153.7 598 26.3
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 3.5e-31 141.4 516 25.6
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.3e-30 139.4 176 46.0
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 1.8e-27 129.0 281 37.4
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 9.8e-26 123.2 279 36.9
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 3.7e-25 121.3 78 66.7
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.4e-24 119.4 600 25.2
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 1.8e-24 119.0 286 35.7
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 6.6e-22 110.5 115 53.0
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.9e-21 109.0 76 69.7
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 2.5e-21 108.6 102 54.9
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 1.2e-12 79.7 177 41.8
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.1e-11 75.1 115 46.1
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.2e-11 74.3 50 68.0
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 1.2e-10 73.2 202 40.1
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 1.5e-10 72.8 55 56.4
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 2.6e-10 72.0 65 56.9
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 3.4e-10 71.6 205 39.5
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.8e-10 70.9 73 49.3
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 9.2e-08 63.5 148 29.1
Hma1.2p1_0468F.1_g158750 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 3.5e-07 61.6 88 71.6
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 3.9e-06 58.2 85 41.2


User provided reference genes

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