Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 1.2e-101 373.2 203 100.0
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.0e-79 300.4 200 85.5
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 6.6e-79 297.7 190 89.5
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 9.0e-44 181.0 208 57.7
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 2.0e-43 179.9 192 54.7
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 2.1e-40 169.9 200 56.5
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 3.3e-30 136.0 169 49.1
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 1.0e-26 124.4 159 49.1
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 1.6e-24 117.1 165 47.9
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.0e-23 114.4 193 40.4
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.5e-22 110.5 198 41.9
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.9e-22 110.2 100 55.0
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 7.4e-22 108.2 183 39.9
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 1.3e-21 107.5 191 36.1
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 1.3e-21 107.5 190 37.9
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 2.2e-21 106.7 191 36.1
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 8.2e-21 104.8 72 68.1
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.2e-21 104.8 191 40.8
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 2.4e-20 103.2 171 42.7
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 4.1e-20 102.4 73 64.4
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 4.1e-20 102.4 251 31.9
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 5.3e-20 102.1 210 32.9
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 6.9e-20 101.7 70 64.3
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 9.0e-20 101.3 65 72.3
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 1.2e-19 100.9 95 54.7
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 1.2e-19 100.9 110 47.3
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 2.0e-19 100.1 77 59.7
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 4.5e-19 99.0 79 55.7
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.0e-18 97.8 182 41.2
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 1.0e-18 97.8 108 47.2
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 1.0e-18 97.8 75 58.7
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.7e-18 97.1 77 57.1
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 2.2e-18 96.7 78 57.7
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 2.9e-18 96.3 95 52.6
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 5.0e-18 95.5 84 56.0
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 6.5e-18 95.1 78 57.7
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 8.5e-18 94.7 79 57.0
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 8.5e-18 94.7 79 57.0
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 1.4e-17 94.0 81 55.6
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.4e-17 94.0 78 57.7
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 1.9e-17 93.6 81 55.6
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.9e-17 93.6 84 52.4
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 3.2e-17 92.8 81 56.8
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.2e-17 92.8 84 52.4
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 3.2e-17 92.8 77 55.8
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 4.2e-17 92.4 102 48.0
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 4.2e-17 92.4 78 52.6
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 4.2e-17 92.4 77 55.8
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 5.5e-17 92.0 122 45.9
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 5.5e-17 92.0 97 49.5
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.2e-17 91.7 190 36.3
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 7.2e-17 91.7 150 38.0
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 7.2e-17 91.7 96 46.9
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 9.4e-17 91.3 81 55.6
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 9.4e-17 91.3 81 55.6
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 9.4e-17 91.3 81 55.6
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 9.4e-17 91.3 134 41.8
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 1.2e-16 90.9 131 40.5
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.6e-16 90.5 137 43.1
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 1.6e-16 90.5 132 41.7
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 1.6e-16 90.5 132 41.7
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 1.6e-16 90.5 53 77.4
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 1.6e-16 90.5 80 56.2
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.6e-16 90.5 76 57.9
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 2.1e-16 90.1 140 42.1
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 2.1e-16 90.1 81 55.6
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 2.1e-16 90.1 73 61.6
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 4.6e-16 89.0 165 35.8
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 4.6e-16 89.0 81 54.3
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 4.6e-16 89.0 123 43.1
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 6.1e-16 88.6 97 49.5
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 7.9e-16 88.2 79 55.7
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 7.9e-16 88.2 72 55.6
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 1.0e-15 87.8 73 53.4
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 1.0e-15 87.8 78 56.4
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 1.4e-15 87.4 67 61.2
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 1.4e-15 87.4 67 61.2
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 1.8e-15 87.0 65 58.5
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 1.8e-15 87.0 65 58.5
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.8e-15 87.0 76 50.0
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 1.8e-15 87.0 67 59.7
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 1.8e-15 87.0 114 42.1
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.3e-15 86.7 82 52.4
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 3.0e-15 86.3 149 40.9
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 3.0e-15 86.3 78 52.6
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 5.1e-15 85.5 151 37.7
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 5.1e-15 85.5 70 55.7
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 8.8e-15 84.7 77 55.8
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 8.8e-15 84.7 77 55.8
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 1.5e-14 84.0 76 51.3
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 2.5e-14 83.2 105 41.0
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 2.5e-14 83.2 80 48.8
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 4.3e-14 82.4 74 52.7
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 5.7e-14 82.0 72 52.8
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 7.4e-14 81.6 75 49.3
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 9.7e-14 81.3 95 41.1
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 9.7e-14 81.3 84 51.2
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 1.7e-13 80.5 75 46.7
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 2.2e-13 80.1 71 53.5
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 2.2e-13 80.1 75 52.0
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 2.8e-13 79.7 69 55.1
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.8e-13 79.7 130 38.5
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 2.8e-13 79.7 84 50.0
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 3.7e-13 79.3 67 58.2
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 3.7e-13 79.3 67 58.2
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 8.2e-13 78.2 126 39.7
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.4e-12 77.4 83 50.6
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 1.4e-12 77.4 83 50.6
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.4e-12 76.6 67 53.7
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 2.4e-12 76.6 67 53.7
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 4.1e-12 75.9 118 39.0
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 5.3e-12 75.5 93 41.9
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 6.9e-12 75.1 94 46.8
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 9.1e-12 74.7 76 46.1
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.5e-11 73.9 76 46.1
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.5e-11 73.9 129 41.1
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.0e-11 73.6 76 46.1
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 2.0e-11 73.6 83 49.4
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 3.4e-11 72.8 76 44.7
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 4.5e-11 72.4 138 36.2
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 5.9e-11 72.0 78 44.9
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.7e-11 71.6 73 45.2
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.0e-10 71.2 83 50.6
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 1.3e-10 70.9 79 44.3
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.7e-10 70.5 90 43.3
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 2.9e-10 69.7 62 51.6
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 5.0e-10 68.9 44 70.5
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 8.5e-10 68.2 76 47.4
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 8.5e-10 68.2 64 53.1
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 1.9e-09 67.0 87 41.4
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 3.2e-09 66.2 119 34.5
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 4.2e-09 65.9 68 50.0
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 5.5e-09 65.5 88 44.3
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 9.4e-09 64.7 68 50.0
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 1.2e-08 64.3 115 37.4
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 2.1e-08 63.5 95 41.1
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 3.6e-08 62.8 74 41.9
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 4.7e-08 62.4 82 45.1
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 4.7e-08 62.4 105 31.4
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 7.9e-08 61.6 57 54.4
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 7.9e-08 61.6 57 54.4
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 3.0e-07 59.7 110 30.0
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 3.9e-07 59.3 97 38.1
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 3.9e-07 59.3 97 38.1
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 3.9e-07 59.3 77 37.7
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 1.1e-06 57.8 57 52.6
PGSC0003DMG400046169 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.1e-06 57.8 94 41.5
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.5e-06 57.4 111 29.7
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 7.4e-06 55.1 117 30.8
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 9.7e-06 54.7 79 35.4


User provided reference genes

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