Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 1.0e-105 386.7 191 100.0
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 1.3e-97 359.8 176 100.0
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 1.3e-97 359.8 176 100.0
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 3.0e-97 358.6 176 99.4
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 5.0e-97 357.8 177 98.9
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.5e-96 356.3 176 99.4
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 7.5e-93 344.0 176 95.5
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 1.9e-91 339.3 176 93.2
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 2.3e-89 332.4 176 90.9
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 5.1e-89 331.3 176 89.8
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 4.7e-87 324.7 176 88.6
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 1.1e-86 323.6 176 87.5
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 1.8e-86 322.8 181 85.6
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 3.1e-86 322.0 176 89.2
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 4.0e-86 321.6 176 87.5
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 2.6e-85 318.9 167 91.0
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 2.6e-85 318.9 176 85.8
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 3.4e-85 318.5 176 85.8
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 4.4e-85 318.2 176 86.4
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 2.9e-84 315.5 176 85.2
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 3.8e-84 315.1 180 85.0
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 8.4e-84 313.9 170 87.1
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 8.4e-84 313.9 176 87.5
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 1.9e-83 312.8 176 86.4
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 3.2e-83 312.0 176 86.4
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 3.2e-83 312.0 177 84.2
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 3.2e-83 312.0 177 84.7
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 2.1e-82 309.3 177 83.6
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 2.1e-82 309.3 176 85.2
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 3.5e-82 308.5 176 83.0
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 3.5e-82 308.5 177 85.3
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 3.5e-82 308.5 176 82.4
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 4.6e-82 308.1 177 85.3
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 4.6e-82 308.1 168 87.5
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 6.0e-82 307.8 176 85.2
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 7.8e-82 307.4 176 84.1
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 7.8e-82 307.4 175 85.1
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 1.0e-81 307.0 177 84.2
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.3e-81 306.6 176 84.1
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 3.0e-81 305.4 176 84.1
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 3.0e-81 305.4 166 88.6
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 6.6e-81 304.3 167 86.2
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 6.6e-81 304.3 181 83.4
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 8.6e-81 303.9 176 83.5
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 8.6e-81 303.9 176 83.5
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 8.6e-81 303.9 178 82.0
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 1.5e-80 303.1 177 83.1
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 3.3e-80 302.0 177 83.1
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 3.3e-80 302.0 176 83.5
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 4.3e-80 301.6 164 88.4
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 7.3e-80 300.8 177 82.5
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 1.2e-79 300.1 179 81.0
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 1.2e-79 300.1 177 81.4
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 1.2e-79 300.1 177 81.4
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 1.6e-79 299.7 176 83.5
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 2.8e-79 298.9 176 83.0
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 2.8e-79 298.9 176 81.2
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 3.6e-79 298.5 176 81.8
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 8.1e-79 297.4 178 81.5
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 1.1e-78 297.0 177 81.9
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 1.4e-78 296.6 167 88.0
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 1.8e-78 296.2 179 79.9
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 2.4e-78 295.8 176 80.1
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 3.1e-78 295.4 177 79.7
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.1e-78 295.4 176 81.8
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 5.2e-78 294.7 176 79.5
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 8.9e-78 293.9 176 79.5
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 1.2e-77 293.5 176 79.5
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 1.2e-77 293.5 167 86.2
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.2e-77 293.5 176 81.2
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 2.0e-77 292.7 176 79.5
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 4.4e-77 291.6 183 80.3
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 7.6e-77 290.8 176 79.0
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.7e-76 289.7 171 82.5
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 2.9e-76 288.9 154 90.3
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.9e-76 288.1 175 79.4
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 6.4e-76 287.7 175 79.4
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 6.4e-76 287.7 177 79.1
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 8.4e-76 287.3 175 79.4
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 8.4e-76 287.3 176 80.1
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.1e-75 287.0 175 78.9
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 1.4e-75 286.6 175 78.3
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.4e-75 286.6 178 78.7
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 1.9e-75 286.2 176 77.3
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 3.2e-75 285.4 177 78.0
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 4.2e-75 285.0 170 78.8
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 4.2e-75 285.0 228 65.4
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 5.4e-75 284.6 161 87.0
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 5.4e-75 284.6 176 74.4
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 9.3e-75 283.9 168 81.5
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 1.2e-74 283.5 167 82.6
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 1.6e-74 283.1 174 78.7
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 2.1e-74 282.7 176 78.4
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 2.7e-74 282.3 168 81.5
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 4.6e-74 281.6 166 79.5
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 4.6e-74 281.6 176 74.4
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 7.8e-74 280.8 169 77.5
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 7.8e-74 280.8 175 77.7
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 1.3e-73 280.0 175 77.7
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 1.7e-73 279.6 169 78.1
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 2.3e-73 279.3 169 78.1
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 2.3e-73 279.3 169 78.1
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 2.3e-73 279.3 169 78.1
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 3.9e-73 278.5 176 76.7
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 5.1e-73 278.1 169 77.5
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.1e-72 276.9 175 77.1
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 2.5e-72 275.8 178 73.0
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.3e-72 275.4 171 77.8
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 3.3e-72 275.4 172 75.0
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 4.3e-72 275.0 164 79.9
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 9.6e-72 273.9 164 79.3
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 1.6e-71 273.1 166 78.9
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.6e-71 271.9 167 79.0
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 4.8e-71 271.6 172 73.8
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 8.1e-71 270.8 167 78.4
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 1.1e-70 270.4 176 75.0
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 1.4e-70 270.0 168 78.0
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 6.9e-70 267.7 178 73.6
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 1.2e-69 266.9 165 80.6
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 1.5e-69 266.5 177 72.9
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 5.8e-69 264.6 177 72.9
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 7.6e-69 264.2 156 82.7
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 1.3e-68 263.5 174 71.3
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 3.8e-68 261.9 177 72.9
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 2.4e-67 259.2 176 70.5
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 7.1e-67 257.7 170 72.4
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 7.9e-66 254.2 157 76.4
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 7.9e-66 254.2 158 77.2
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 7.9e-66 254.2 177 67.8
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 1.8e-65 253.1 166 73.5
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 3.3e-64 248.8 175 68.0
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 3.3e-64 248.8 174 69.0
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 3.6e-63 245.4 167 69.5
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 9.0e-62 240.7 123 92.7
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 9.0e-62 240.7 123 92.7
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 1.9e-59 233.0 171 67.3
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 3.2e-59 232.3 171 66.7
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 6.2e-55 218.0 139 77.0
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 1.8e-54 216.5 124 83.9
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 4.5e-53 211.8 123 81.3
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.3e-52 210.3 123 82.1
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 1.2e-50 203.8 114 85.1
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 6.7e-49 198.0 191 52.4
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 2.1e-47 193.0 116 81.0
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 1.6e-39 166.8 182 50.0
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.1e-38 164.1 98 76.5
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 1.1e-38 164.1 86 87.2
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.4e-38 162.9 105 73.3
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 6.9e-38 161.4 102 75.5
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 9.7e-32 141.0 95 74.7
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 5.7e-24 115.2 111 56.8
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 7.4e-24 114.8 185 36.2
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 2.2e-23 113.2 60 80.0
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 2.0e-21 106.7 118 47.5
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 4.5e-21 105.5 162 36.4
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 5.9e-21 105.1 117 49.6
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 7.7e-21 104.8 141 41.8
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-19 100.5 97 53.6
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 5.5e-19 98.6 54 87.0
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 4.0e-17 92.4 52 86.5
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.3e-15 87.4 59 72.9
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 2.4e-14 83.2 50 80.0
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 2.5e-11 73.2 63 65.1
QL03p001871 Quercus lobata HOM05D004471 ORTHO05D337354 5.4e-06 55.5 69 50.7
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 5.4e-06 55.5 35 68.6


User provided reference genes

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