Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g072270.1 Solanum lycopersicum HOM05D002270 ORTHO05D002866 2.1e-238 828.6 405 100.0
Sopen04g028450 Solanum pennellii HOM05D002270 ORTHO05D002866 1.2e-225 786.2 396 97.7
CAN.G1010.9 Capsicum annuum HOM05D002270 ORTHO05D002866 1.2e-185 653.3 400 81.0
Nitab4.5_0000433g0190 Nicotiana tabacum HOM05D002270 ORTHO05D002866 1.8e-181 639.4 405 78.5
Peaxi162Scf00226g00824 Petunia axillaris HOM05D002270 ORTHO05D002866 5.2e-168 594.7 392 75.0
Nitab4.5_0003025g0030 Nicotiana tabacum HOM05D002270 ORTHO05D002866 6.8e-144 514.6 338 76.0
Cc04_g01520 Coffea canephora HOM05D002270 ORTHO05D002866 4.2e-117 425.6 396 53.8
Dinv37885 Davidia involucrata HOM05D002270 ORTHO05D002866 1.4e-112 410.6 393 54.7
SGA_v2.0_scaffold71G23844 Striga asiatica HOM05D002270 ORTHO05D002866 1.9e-106 390.2 393 51.9
TAR636G1163 Trochodendron aralioides HOM05D002270 ORTHO05D002866 1.7e-102 377.1 398 49.5
Lsat_1_v5_gn_4_95020 Lactuca sativa HOM05D002270 ORTHO05D002866 2.2e-102 376.7 401 48.9
Atru.chr1.3813 Acer truncatum HOM05D002270 ORTHO05D002866 3.8e-102 375.9 397 49.4
COL.COLO4_30723 Corchorus olitorius HOM05D002270 ORTHO05D002866 2.5e-101 373.2 397 48.9
Nn8g38745 Nelumbo nucifera HOM05D002270 ORTHO05D002866 3.2e-101 372.9 403 46.2
Gohir.D10G058500 Gossypium hirsutum HOM05D002270 ORTHO05D002866 3.6e-100 369.4 397 48.6
MSTRG.10966 Avicennia marina HOM05D002270 ORTHO05D002866 4.6e-100 369.0 402 48.8
Gorai.011G062600 Gossypium raimondii HOM05D002270 ORTHO05D002866 6.1e-100 368.6 398 48.7
Aqoxy7G03985 Aquilegia oxysepala HOM05D002270 ORTHO05D002866 7.9e-100 368.2 400 46.8
Gohir.A10G056600 Gossypium hirsutum HOM05D002270 ORTHO05D002866 7.9e-100 368.2 397 48.9
SalBow6G4013 Salvia bowleyana HOM05D002270 ORTHO05D002866 1.0e-99 367.9 422 47.4
HanXRQChr09g0276661 Helianthus annuus HOM05D002270 ORTHO05D002866 2.3e-99 366.7 403 47.6
Atru.chr1.3816 Acer truncatum HOM05D002270 ORTHO05D002866 5.1e-99 365.5 394 49.0
Migut.H01763 Erythranthe guttata HOM05D002270 ORTHO05D002866 1.1e-98 364.4 401 49.9
Lsat_1_v5_gn_7_1960 Lactuca sativa HOM05D002270 ORTHO05D002866 1.1e-98 364.4 403 47.1
Lsat_1_v5_gn_7_1981 Lactuca sativa HOM05D002270 ORTHO05D002866 1.1e-98 364.4 403 47.4
Duzib235G1111 Durio zibethinus HOM05D002270 ORTHO05D002866 3.3e-98 362.8 394 47.7
Cfa003549 Carpinus fangiana HOM05D002270 ORTHO05D002866 1.3e-97 360.9 408 47.1
Potri.017G039100 Populus trichocarpa HOM05D002270 ORTHO05D002866 3.4e-95 352.8 397 47.4
Haze_16005 Corylus avellana HOM05D002270 ORTHO05D002866 1.3e-94 350.9 422 45.5
Rhsim07G0217300 Rhododendron simsii HOM05D002270 ORTHO05D002866 1.3e-94 350.9 436 45.2
QL05p009063 Quercus lobata HOM05D002270 ORTHO05D002866 7.2e-93 345.1 399 47.9
Prupe.3G044200 Prunus persica HOM05D002270 ORTHO05D002866 3.6e-92 342.8 392 45.4
Lj5C40G12 Lonicera japonica HOM05D002270 ORTHO05D002866 1.0e-91 341.3 391 45.8
Manes.04G142500 Manihot esculenta HOM05D002270 ORTHO05D002866 1.0e-91 341.3 398 48.0
ECA232G4141 Erigeron canadensis HOM05D002270 ORTHO05D002866 1.5e-90 337.4 407 45.0
Ciclev10024676m.g Citrus clementina HOM05D002270 ORTHO05D002866 2.0e-90 337.0 406 45.6
FAN05G0510 Fragaria x ananassa HOM05D002270 ORTHO05D002866 2.6e-90 336.7 402 44.0
RcHm_v2.0_Chr2g0144641 Rosa chinensis HOM05D002270 ORTHO05D002866 7.4e-90 335.1 402 45.0
TWI09G1355 Tripterygium wilfordii HOM05D002270 ORTHO05D002866 7.4e-90 335.1 399 47.1
FvH4_6g34300 Fragaria vesca HOM05D002270 ORTHO05D002866 9.7e-90 334.7 402 43.8
FAN14G4121 Fragaria x ananassa HOM05D002270 ORTHO05D002866 9.7e-90 334.7 402 43.8
vmacro22219 Vaccinium macrocarpon HOM05D002270 ORTHO05D002866 9.7e-90 334.7 361 49.9
FAN02G3927 Fragaria x ananassa HOM05D002270 ORTHO05D002866 1.7e-89 334.0 402 43.5
Glyma.07G035600 Glycine max HOM05D002270 ORTHO05D002866 3.7e-89 332.8 401 44.6
MD05G1009600 Malus domestica HOM05D002270 ORTHO05D002866 1.1e-88 331.3 408 44.6
Lj3g0006373 Lotus japonicus HOM05D002270 ORTHO05D002866 2.4e-88 330.1 402 46.0
ClCG09G000860 Citrullus lanatus HOM05D002270 ORTHO05D002866 3.1e-88 329.7 398 46.5
Sed0013702 Sechium edule HOM05D002270 ORTHO05D002866 4.1e-88 329.3 399 45.4
arahy.Tifrunner.gnm1.ann1.B3D1QM Arachis hypogaea HOM05D002270 ORTHO05D002866 5.3e-88 328.9 402 44.3
CANSAT56G0650 Cannabis sativa HOM05D002270 ORTHO05D002866 9.1e-88 328.2 426 43.4
arahy.Tifrunner.gnm1.ann1.VXKY2I Arachis hypogaea HOM05D002270 ORTHO05D002866 2.6e-87 326.6 402 43.8
CsaV3_7G034610 Cucumis sativus L. HOM05D002270 ORTHO05D002866 1.7e-86 323.9 396 45.2
PGR142G3590 Punica granatum HOM05D002270 ORTHO05D002866 2.9e-86 323.2 395 44.6
Glyma.16G004800 Glycine max HOM05D002270 ORTHO05D002866 1.9e-85 320.5 400 44.8
COL.COLO4_12569 Corchorus olitorius HOM05D002270 ORTHO05D002866 7.2e-85 318.5 392 44.1
Phvul.010G134100 Phaseolus vulgaris HOM05D002270 ORTHO05D002866 1.2e-84 317.8 405 44.0
Oeu047969.1 Olea europaea HOM05D002270 ORTHO05D002866 3.6e-84 316.2 389 46.3
PSO144G0138 Papaver somniferum HOM05D002270 ORTHO05D002866 4.7e-84 315.8 396 46.0
PSO423G0075 Papaver somniferum HOM05D002270 ORTHO05D002866 2.0e-82 310.5 396 45.5
AL2G25500 Arabidopsis lyrata HOM05D002270 ORTHO05D002866 7.4e-82 308.5 402 41.5
HPP92_008118 Vanilla planifolia HOM05D002270 ORTHO05D002866 2.8e-81 306.6 402 42.0
Sabra17G0026200 Salix brachista HOM05D002270 ORTHO05D002866 8.2e-81 305.1 502 39.0
AT1G67120 Arabidopsis thaliana HOM05D002270 ORTHO05D002866 3.1e-80 303.1 408 40.9
Hund05751 Selenicereus undatus HOM05D002270 ORTHO05D002866 5.3e-80 302.4 411 41.4
TPR.G29953 Trifolium pratense HOM05D002270 ORTHO05D002866 7.7e-79 298.5 425 41.6
Medtr8g018890 Medicago truncatula HOM05D002270 ORTHO05D002866 1.0e-78 298.1 402 42.8
Rhsim08G0236800 Rhododendron simsii HOM05D002270 ORTHO05D002866 1.7e-78 297.4 456 40.1
Carub.0002s1342 Capsella rubella HOM05D002270 ORTHO05D002866 2.2e-78 297.0 410 41.0
Psat4g180280 Pisum sativum HOM05D002270 ORTHO05D002866 5.5e-77 292.4 425 40.9
CARHR059570 Cardamine hirsuta HOM05D002270 ORTHO05D002866 9.4e-77 291.6 393 41.5
Aa31LG2G3520 Aethionema arabicum HOM05D002270 ORTHO05D002866 6.1e-76 288.9 408 40.2
Thhalv10017991m.g Eutrema salsugineum HOM05D002270 ORTHO05D002866 6.1e-76 288.9 416 38.9
Sp5g22070 Schrenkiella parvula HOM05D002270 ORTHO05D002866 6.1e-76 288.9 409 39.4
QL01p053604 Quercus lobata HOM05D002270 ORTHO05D002866 8.0e-76 288.5 398 43.5
GSVIVG01016794001 Vitis vinifera HOM05D002270 ORTHO05D002866 5.2e-75 285.8 404 41.1
BraA02t06460Z Brassica rapa HOM05D002270 ORTHO05D002866 2.6e-74 283.5 405 38.0
C02p22490 Brassica napus HOM05D002270 ORTHO05D002866 7.5e-74 282.0 405 39.3
A02p14000 Brassica napus HOM05D002270 ORTHO05D002866 1.3e-73 281.2 405 38.5
ATR0736G170 Amborella trichopoda HOM05D002270 ORTHO05D002866 9.1e-72 275.0 409 39.9
Actinidia32171 Actinidia chinensis HOM05D002270 ORTHO05D002866 1.2e-71 274.6 382 43.2
Ca_23356_v3 Cicer arietinum L. HOM05D002270 ORTHO05D002866 3.6e-68 263.1 338 44.7
Zm00001eb290580 Zea mays HOM05D002270 ORTHO05D002866 4.7e-68 262.7 398 38.4
THA.LOC104807245 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 6.8e-67 258.8 397 40.3
Lalb_Chr20g0113881 Lupinus albus HOM05D002270 ORTHO05D002866 3.4e-66 256.5 319 44.2
TPR.G9777 Trifolium pratense HOM05D002270 ORTHO05D002866 5.7e-66 255.8 398 39.4
Ah.08g216540 Amaranthus hybridus HOM05D002270 ORTHO05D002866 2.8e-65 253.4 439 35.8
QL01p053642 Quercus lobata HOM05D002270 ORTHO05D002866 2.9e-62 243.4 362 41.4
THA.LOC104805560 Tarenaya hassleriana HOM05D002270 ORTHO05D002866 5.0e-62 242.7 377 39.3
EL10Ac7g16387 Beta vulgaris HOM05D002270 ORTHO05D002866 4.2e-61 239.6 339 42.2
CDE12G0416 Ceratophyllum demersum HOM05D002270 ORTHO05D002866 1.3e-57 228.0 394 35.3
CSS0023775 Camellia sinensis var. sinensis HOM05D002270 ORTHO05D002866 1.4e-56 224.6 236 51.3
AUR62009863 Chenopodium quinoa HOM05D002270 ORTHO05D002866 6.6e-54 215.7 381 35.2
Os10g0456950 Oryza sativa ssp. japonica HOM05D002270 ORTHO05D002866 1.9e-53 214.2 298 39.3
Carub.0002s1105 Capsella rubella HOM05D002270 ORTHO05D002866 4.3e-53 213.0 294 41.5
BcaC03g14803 Brassica carinata HOM05D002270 ORTHO05D002866 1.9e-48 197.6 393 31.8
Thecc.06G117100 Theobroma cacao HOM05D002270 ORTHO05D002866 1.0e-46 191.8 208 46.2
Cpa.g.sc30.16 Carica papaya HOM05D002270 ORTHO05D002866 3.9e-46 189.9 205 45.4
Pp3c8_22130 Physcomitrium patens HOM05D002270 ORTHO05D002866 1.1e-43 181.8 424 32.5
Mapoly0033s0024 Marchantia polymorpha HOM05D002270 ORTHO05D002866 2.3e-43 180.6 409 32.5
BcaC05g27865 Brassica carinata HOM05D001285 ORTHO05D000199 5.2e-43 179.5 278 37.1
AUR62001507 Chenopodium quinoa HOM05D002270 ORTHO05D002866 8.9e-43 178.7 329 36.5
Cpa.g.sc30.17 Carica papaya HOM05D002270 ORTHO05D002866 9.8e-42 175.3 174 50.6
SEGI_23610 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 1.4e-40 171.4 264 39.4
QL93p0107_0362 Quercus lobata HOM05D002270 ORTHO05D002866 4.3e-37 159.8 153 54.2
VMungo0331G1745 Vigna mungo HOM05D000103 ORTHO05D000049 1.6e-36 157.9 206 40.3
VMungo0464G1016 Vigna mungo HOM05D002270 ORTHO05D002866 6.4e-33 146.0 157 50.3
C05p38670 Brassica napus HOM05D002270 ORTHO05D002866 7.8e-31 139.0 168 42.9
MELO3C024369.2 Cucumis melo HOM05D002270 ORTHO05D002866 3.1e-27 127.1 163 45.4
Eucgr.J02836 Eucalyptus grandis HOM05D002270 ORTHO05D002866 1.2e-26 125.2 169 39.6
unitig_22.g5235 Utricularia gibba HOM05D002270 ORTHO05D002866 7.6e-26 122.5 155 43.9
CBR_g742 Chara braunii HOM05D002270 ORTHO05D002866 8.4e-25 119.0 427 23.7
Nitab4.5_0003025g0040 Nicotiana tabacum HOM05D002270 ORTHO05D002866 4.3e-21 106.7 58 91.4
DCAR_014031 Daucus carota HOM05D002270 ORTHO05D002866 7.3e-21 105.9 132 46.2
SEGI_35812 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 9.6e-21 105.5 169 39.1
QL01p054873 Quercus lobata HOM05D002270 ORTHO05D002866 4.7e-20 103.2 126 44.4
QL93p0381_0021 Quercus lobata HOM05D002270 ORTHO05D002866 6.9e-19 99.4 124 41.1
SEGI_39038 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 2.2e-17 94.4 165 36.4
AagrBONN_evm.TU.Sc2ySwM_117.1506 Anthoceros agrestis HOM05D002270 ORTHO05D002866 2.4e-16 90.9 130 38.5
TPR.G36181 Trifolium pratense HOM05D002270 ORTHO05D002866 9.3e-16 89.0 129 41.9
Psat4g184160 Pisum sativum HOM05D002270 ORTHO05D002866 7.8e-15 85.9 157 31.2
AagrBONN_evm.TU.Sc2ySwM_344.4174 Anthoceros agrestis HOM05D002270 ORTHO05D002866 2.4e-11 74.3 135 36.3
SEGI_19104 Sequoiadendron giganteum HOM05D002270 ORTHO05D002866 6.4e-09 66.2 154 31.8
CiPaw.01G221300 Carya illinoinensis HOM05D002270 ORTHO05D002866 1.1e-08 65.5 46 67.4
Psat4g187880 Pisum sativum HOM05D002270 ORTHO05D002866 1.2e-07 62.0 43 67.4


User provided reference genes

Program Settings