Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 2.9e-103 378.6 201 100.0
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 1.7e-63 246.5 200 65.5
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 1.8e-57 226.5 198 59.1
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 2.7e-56 222.6 200 58.0
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 1.0e-55 220.7 199 57.8
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 1.0e-55 220.7 200 58.0
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 3.8e-55 218.8 201 54.7
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 5.6e-54 214.9 189 59.8
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 9.5e-54 214.2 199 55.8
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 1.2e-53 213.8 199 55.8
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 2.8e-53 212.6 199 53.8
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.0e-52 210.7 198 54.0
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 1.8e-52 209.9 199 54.8
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 4.0e-52 208.8 199 52.8
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 2.0e-51 206.5 201 53.2
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 2.6e-51 206.1 199 53.8
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 7.5e-51 204.5 199 51.8
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 6.4e-50 201.4 199 50.8
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 6.4e-50 201.4 201 51.2
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 1.9e-49 199.9 200 52.0
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 2.4e-49 199.5 199 54.3
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 5.4e-49 198.4 107 100.0
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 1.2e-48 197.2 200 51.0
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.7e-48 196.1 199 50.3
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 4.6e-48 195.3 199 50.3
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 7.8e-48 194.5 198 53.0
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 1.0e-47 194.1 199 52.3
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 1.7e-47 193.4 200 50.5
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 3.0e-47 192.6 199 47.7
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 3.0e-47 192.6 199 50.3
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 8.6e-47 191.0 200 51.0
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 2.5e-46 189.5 199 47.2
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.5e-46 189.5 201 49.3
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.3e-46 189.1 201 49.3
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.3e-46 189.1 201 49.3
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 2.1e-45 186.4 198 50.5
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 6.2e-45 184.9 199 49.7
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 8.0e-45 184.5 198 48.0
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 1.4e-44 183.7 201 47.8
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 3.1e-44 182.6 199 46.7
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 3.1e-44 182.6 199 45.7
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 3.1e-44 182.6 198 47.0
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 8.9e-44 181.0 200 46.5
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.2e-43 180.6 198 47.5
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 3.4e-43 179.1 200 46.5
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 2.2e-42 176.4 195 49.2
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 2.2e-42 176.4 200 47.0
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 2.9e-42 176.0 195 46.2
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 4.9e-42 175.3 188 48.9
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 2.4e-41 172.9 199 44.7
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 3.2e-41 172.6 214 45.8
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 1.7e-39 166.8 190 44.7
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 5.1e-39 165.2 189 46.0
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 5.1e-39 165.2 200 43.5
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 6.6e-39 164.9 197 47.7
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 6.6e-39 164.9 195 44.1
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 4.3e-38 162.2 271 37.6
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 2.1e-37 159.8 198 42.9
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 4.7e-37 158.7 165 58.2
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 1.7e-34 150.2 197 46.2
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 9.2e-33 144.4 195 38.5
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 7.8e-32 141.4 145 57.9
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 1.3e-31 140.6 195 37.4
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 6.6e-31 138.3 197 41.6
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 1.9e-30 136.7 201 39.8
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 5.6e-30 135.2 195 36.9
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 5.6e-30 135.2 195 36.9
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 5.6e-30 135.2 198 34.8
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 6.2e-29 131.7 201 39.3
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 1.1e-28 131.0 94 68.1
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 4.0e-28 129.0 195 35.9
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 1.2e-27 127.5 199 38.2
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 5.8e-27 125.2 194 41.2
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 1.7e-26 123.6 198 37.4
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 4.9e-26 122.1 196 35.7
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 1.9e-25 120.2 60 98.3
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 2.7e-24 116.3 198 38.9
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 4.6e-24 115.5 195 33.8
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 1.9e-22 110.2 107 55.1
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 1.9e-22 110.2 107 57.0
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 4.3e-22 109.0 159 40.9
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 5.6e-22 108.6 107 55.1
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 9.6e-22 107.8 86 58.1
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 2.8e-21 106.3 144 45.1
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 4.7e-21 105.5 74 68.9
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 1.1e-20 104.4 107 56.1
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 1.4e-20 104.0 184 33.7
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 2.4e-20 103.2 86 53.5
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 6.9e-20 101.7 107 52.3
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 9.0e-20 101.3 107 53.3
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 1.2e-19 100.9 102 52.9
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.5e-19 100.5 107 53.3
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.5e-19 100.5 107 52.3
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 2.0e-19 100.1 107 48.6
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 3.4e-19 99.4 92 45.7
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 5.8e-19 98.6 163 41.1
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 1.3e-18 97.4 184 34.8
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 2.2e-18 96.7 107 45.8
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 6.4e-18 95.1 137 40.9
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 8.4e-18 94.7 109 47.7
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 2.4e-17 93.2 82 52.4
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 2.4e-17 93.2 58 74.1
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 7.1e-17 91.7 108 50.0
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 9.3e-17 91.3 82 51.2
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 2.1e-16 90.1 107 43.0
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.5e-16 89.4 107 43.9
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 3.5e-16 89.4 68 60.3
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 6.0e-16 88.6 107 46.7
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 1.7e-15 87.0 59 71.2
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.3e-15 86.7 107 43.0
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 5.1e-15 85.5 56 69.6
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 6.6e-15 85.1 62 62.9
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 1.1e-14 84.3 107 43.0
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 1.1e-14 84.3 61 60.7
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 1.1e-14 84.3 107 42.1
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.5e-14 84.0 107 42.1
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 1.5e-14 84.0 72 55.6
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 3.3e-14 82.8 58 62.1
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 5.6e-14 82.0 107 42.1
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 9.6e-14 81.3 62 62.9
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 1.3e-13 80.9 84 41.7
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 1.6e-13 80.5 107 43.0
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 1.6e-13 80.5 53 71.7
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 1.6e-13 80.5 53 71.7
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 2.1e-13 80.1 107 42.1
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 2.8e-13 79.7 60 66.7
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 8.1e-13 78.2 87 48.3
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 4.0e-12 75.9 127 37.8
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 6.9e-12 75.1 66 54.5
Migut.D01629 Erythranthe guttata HOM05D004264 ORTHO05D004680 2.6e-11 73.2 100 42.0
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 3.4e-11 72.8 106 36.8
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 9.9e-11 71.2 191 28.8
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 6.4e-10 68.6 100 38.0
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 8.4e-10 68.2 100 37.0
Migut.J00117 Erythranthe guttata HOM05D004264 ORTHO05D004680 1.1e-09 67.8 107 39.3
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 1.9e-09 67.0 136 33.1
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.9e-09 67.0 100 37.0
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 4.2e-09 65.9 126 34.1
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 6.0e-08 62.0 117 35.0
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 7.9e-08 61.6 104 35.6
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 3.9e-07 59.3 72 41.7
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 7.4e-06 55.1 100 35.0


User provided reference genes

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