Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 3.6e-124 448.4 243 100.0
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 4.7e-124 448.0 243 99.6
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 1.7e-121 439.5 243 97.5
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 8.9e-115 417.2 258 88.4
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.9e-112 409.5 258 86.8
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 3.3e-109 398.7 234 90.2
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 1.5e-93 346.7 244 75.8
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 1.3e-92 343.6 244 75.8
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 9.0e-91 337.4 243 73.3
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 2.0e-90 336.3 243 74.1
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 1.1e-88 330.5 243 73.7
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 1.4e-88 330.1 243 72.8
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 3.2e-88 328.9 245 72.2
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 7.1e-88 327.8 243 72.8
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 1.2e-87 327.0 243 72.8
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.5e-87 325.5 243 72.4
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 4.6e-87 325.1 244 71.3
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 7.9e-87 324.3 243 69.5
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.0e-86 323.9 244 70.9
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 1.0e-86 323.9 243 72.8
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 2.3e-86 322.8 243 72.4
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 2.3e-86 322.8 243 72.4
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 3.0e-86 322.4 243 70.0
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 3.0e-86 322.4 243 70.8
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 8.7e-86 320.9 243 71.6
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 8.7e-86 320.9 243 72.4
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 1.5e-85 320.1 243 71.2
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 1.9e-85 319.7 244 72.1
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 1.9e-85 319.7 243 71.6
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 4.3e-85 318.5 244 73.0
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 5.6e-85 318.2 243 71.2
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 5.6e-85 318.2 243 71.6
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 7.4e-85 317.8 244 71.7
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 7.4e-85 317.8 243 71.2
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 9.6e-85 317.4 243 69.5
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 9.6e-85 317.4 243 71.2
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 1.6e-84 316.6 243 70.4
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 1.6e-84 316.6 243 69.1
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.1e-84 316.2 243 71.2
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.1e-84 316.2 243 71.2
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 4.8e-84 315.1 243 70.4
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 4.8e-84 315.1 243 69.1
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 4.8e-84 315.1 242 69.8
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 8.1e-84 314.3 243 68.7
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 2.4e-83 312.8 243 69.5
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 4.0e-83 312.0 243 70.0
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 4.0e-83 312.0 243 70.8
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 4.0e-83 312.0 244 73.4
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 5.3e-83 311.6 243 70.4
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 5.3e-83 311.6 243 69.1
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 5.3e-83 311.6 243 68.3
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 6.9e-83 311.2 239 71.1
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 9.0e-83 310.8 243 69.5
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 1.2e-82 310.5 243 69.1
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 2.6e-82 309.3 243 68.3
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 3.4e-82 308.9 243 68.7
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 5.8e-82 308.1 243 70.0
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 9.9e-82 307.4 245 69.8
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 1.3e-81 307.0 240 71.7
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.3e-81 307.0 243 70.4
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 4.9e-81 305.1 243 67.1
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 8.4e-81 304.3 243 66.7
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 1.4e-80 303.5 243 67.5
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 1.4e-80 303.5 240 70.4
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 1.4e-80 303.5 244 69.3
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.4e-80 303.5 243 67.1
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.9e-80 303.1 245 67.3
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 2.5e-80 302.8 243 70.0
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 2.5e-80 302.8 243 66.3
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 2.5e-80 302.8 317 57.1
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 3.2e-80 302.4 243 65.0
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 3.2e-80 302.4 244 69.3
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 3.2e-80 302.4 239 69.0
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 4.2e-80 302.0 243 66.7
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 4.2e-80 302.0 243 66.7
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 9.3e-80 300.8 243 66.7
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 1.2e-79 300.4 246 68.7
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.2e-79 300.4 243 66.7
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 1.2e-79 300.4 244 67.6
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 1.6e-79 300.1 244 67.2
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 2.1e-79 299.7 243 66.7
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 2.1e-79 299.7 244 67.2
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 3.5e-79 298.9 279 62.0
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 4.6e-79 298.5 225 69.3
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 6.0e-79 298.1 284 60.9
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 1.0e-78 297.4 243 67.9
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 1.0e-78 297.4 229 68.1
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.0e-78 297.4 244 65.6
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 1.3e-78 297.0 243 65.4
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 1.3e-78 297.0 243 65.4
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.8e-78 296.6 243 66.3
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 2.3e-78 296.2 244 66.4
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 2.3e-78 296.2 247 64.4
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 2.3e-78 296.2 245 65.3
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 3.0e-78 295.8 243 65.8
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 6.7e-78 294.7 243 64.2
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 8.7e-78 294.3 245 65.3
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 8.7e-78 294.3 243 63.4
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 8.7e-78 294.3 222 71.6
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 1.5e-77 293.5 222 68.9
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 5.6e-77 291.6 243 64.2
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 9.6e-77 290.8 282 60.6
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 9.6e-77 290.8 247 67.6
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 1.6e-76 290.0 243 63.0
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 3.1e-75 285.8 244 65.2
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 1.2e-74 283.9 225 68.9
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 3.4e-74 282.3 197 76.6
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 1.0e-73 280.8 196 74.0
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 1.3e-73 280.4 279 58.1
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 2.9e-73 279.3 223 68.2
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 8.4e-73 277.7 292 55.8
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 1.1e-72 277.3 245 63.3
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 1.1e-72 277.3 245 63.3
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 1.4e-72 276.9 196 75.0
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 1.6e-71 273.5 196 73.5
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.1e-71 273.1 203 72.4
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 2.7e-71 272.7 226 65.0
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 3.5e-71 272.3 203 71.9
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 3.5e-71 272.3 244 63.1
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 7.9e-71 271.2 203 71.9
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.8e-70 270.0 203 71.4
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 3.9e-70 268.9 196 74.0
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 6.7e-70 268.1 196 70.9
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 7.4e-69 264.6 225 64.0
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 1.6e-68 263.5 238 60.1
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 2.2e-68 263.1 155 89.7
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.5e-66 256.9 196 69.4
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 2.9e-65 252.7 196 65.3
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 3.2e-64 249.2 175 76.0
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 1.5e-61 240.4 244 58.2
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 1.4e-59 233.8 188 66.0
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 9.1e-59 231.1 181 67.4
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 5.5e-56 221.9 222 58.6
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.3e-52 210.7 196 62.2
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 2.3e-46 189.9 225 52.4
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 8.2e-44 181.4 135 65.9
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 4.1e-43 179.1 155 61.3
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 9.4e-40 167.9 97 88.7
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 3.7e-36 156.0 132 64.4
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 2.0e-34 150.2 112 73.2
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 5.0e-33 145.6 170 52.9
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 3.0e-30 136.3 149 52.3
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 1.5e-29 134.0 226 43.4
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 9.8e-29 131.3 210 40.0
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 5.4e-27 125.6 206 36.9
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 4.2e-24 115.9 214 35.0
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.2e-21 107.8 234 38.5
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 3.4e-21 106.3 82 64.6
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 4.4e-21 105.9 194 35.1
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 5.7e-21 105.5 206 35.0
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 4.1e-19 99.4 243 36.2
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 1.3e-17 94.4 63 79.4
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 1.5e-13 80.9 54 70.4
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 5.4e-11 72.4 64 65.6
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.0e-09 68.2 179 35.2
SMO367G0772 Selaginella moellendorffii HOM05D002293 ORTHO05D005475 1.9e-08 63.9 216 27.3
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 3.6e-07 59.7 40 82.5
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 4.7e-07 59.3 50 68.0


User provided reference genes

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