Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 5.1e-117 424.5 220 100.0
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 5.1e-117 424.5 220 100.0
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 5.1e-117 424.5 220 100.0
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 1.5e-113 412.9 220 97.3
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 7.1e-87 324.3 194 86.6
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 2.7e-78 295.8 222 71.2
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 5.7e-76 288.1 194 77.8
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 1.1e-71 273.9 207 67.1
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 5.5e-71 271.6 200 66.0
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 7.2e-71 271.2 201 68.2
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 9.3e-71 270.8 194 69.6
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 1.0e-69 267.3 192 69.3
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 3.0e-69 265.8 195 67.2
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 1.1e-68 263.8 194 67.5
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 4.3e-68 261.9 197 65.0
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.1e-66 257.3 194 67.5
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 1.4e-66 256.9 194 67.0
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 1.4e-66 256.9 194 65.5
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 4.1e-66 255.4 201 64.7
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 5.3e-66 255.0 203 64.0
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 9.0e-66 254.2 201 61.7
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 1.2e-65 253.8 196 63.3
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 2.6e-65 252.7 194 69.1
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 3.4e-65 252.3 195 63.6
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 3.4e-65 252.3 197 64.0
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 3.4e-65 252.3 201 64.2
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 3.4e-65 252.3 207 58.9
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 3.4e-65 252.3 145 89.0
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 1.0e-64 250.8 201 63.7
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 2.2e-64 249.6 194 60.8
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 2.5e-63 246.1 201 62.7
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 3.2e-63 245.7 198 64.1
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 7.2e-63 244.6 198 65.7
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 1.6e-62 243.4 201 60.7
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 1.6e-62 243.4 195 63.6
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 1.6e-62 243.4 200 59.0
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 2.1e-62 243.0 205 58.0
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 2.7e-62 242.7 194 69.6
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 3.6e-62 242.3 197 64.0
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 7.9e-62 241.1 200 63.5
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.0e-61 240.7 197 62.4
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.0e-61 240.7 201 62.7
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 1.4e-61 240.4 203 60.6
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 2.3e-61 239.6 201 59.7
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 2.3e-61 239.6 202 60.4
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 3.0e-61 239.2 196 61.7
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 3.9e-61 238.8 195 60.5
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 5.1e-61 238.4 201 59.2
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 8.8e-61 237.7 196 61.7
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.1e-60 237.3 201 59.2
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 2.6e-60 236.1 198 62.1
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 2.6e-60 236.1 203 59.6
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 3.3e-60 235.7 201 61.7
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 3.3e-60 235.7 163 69.9
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 5.7e-60 235.0 195 58.5
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 1.1e-58 230.7 214 56.1
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 9.1e-58 227.6 206 53.9
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 1.5e-57 226.9 215 53.5
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 5.9e-57 224.9 202 56.9
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 5.9e-57 224.9 197 55.8
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 5.0e-56 221.9 200 57.5
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 2.5e-55 219.5 165 63.6
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 4.7e-54 215.3 204 53.9
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 1.1e-52 210.7 164 62.2
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 2.0e-52 209.9 201 50.7
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 4.4e-52 208.8 201 52.7
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 6.3e-51 204.9 195 62.1
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 6.3e-51 204.9 199 48.7
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 1.1e-50 204.1 195 50.3
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.4e-50 203.8 207 51.2
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 4.1e-50 202.2 202 50.5
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 4.1e-50 202.2 195 49.7
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 7.0e-50 201.4 198 51.5
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 9.1e-50 201.1 202 50.5
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 9.1e-50 201.1 202 50.5
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 1.2e-49 200.7 202 50.0
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 1.6e-49 200.3 202 50.5
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 2.6e-49 199.5 202 49.5
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 3.5e-49 199.1 200 50.0
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 1.3e-48 197.2 199 49.2
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 5.0e-48 195.3 200 51.5
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 5.0e-48 195.3 202 48.5
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 1.5e-47 193.7 200 51.0
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 2.5e-47 193.0 194 53.1
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 3.2e-47 192.6 182 52.7
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 2.1e-46 189.9 167 58.7
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 1.0e-45 187.6 149 59.1
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 2.3e-45 186.4 140 64.3
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 3.0e-45 186.0 196 48.5
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 6.7e-45 184.9 194 49.5
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 6.7e-45 184.9 194 47.9
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.2e-44 184.1 202 47.0
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 4.4e-44 182.2 194 44.8
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 5.7e-44 181.8 220 45.9
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 4.8e-43 178.7 194 46.4
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.4e-42 176.4 202 46.5
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 2.7e-41 172.9 195 47.7
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 1.0e-40 171.0 187 44.4
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.2e-40 169.9 199 42.2
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 6.5e-40 168.3 251 38.6
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.0e-37 161.0 189 42.9
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 2.3e-37 159.8 204 43.1
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 4.0e-37 159.1 174 47.7
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.2e-36 157.5 201 45.3
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 3.4e-36 156.0 184 46.7
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-35 154.1 190 45.3
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 2.8e-35 152.9 187 43.3
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 8.3e-35 151.4 139 52.5
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 3.5e-33 146.0 115 58.3
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-32 144.1 187 42.8
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 1.1e-31 141.0 110 60.9
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 3.2e-31 139.4 124 52.4
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 6.1e-30 135.2 151 43.7
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 1.0e-29 134.4 155 47.1
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 2.0e-28 130.2 121 52.1
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 1.6e-25 120.6 147 43.5
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 3.8e-24 115.9 153 40.5
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 5.6e-23 112.1 108 50.0
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 4.7e-22 109.0 138 41.3
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 1.4e-21 107.5 106 50.9
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 4.0e-21 105.9 108 50.9
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 5.2e-21 105.5 104 45.2
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 2.0e-20 103.6 123 42.3
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 9.8e-20 101.3 111 46.8
CAN.G564.24 Capsicum annuum HOM05D005414 ORTHO05D006844 4.6e-17 92.4 114 50.0
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 1.7e-16 90.5 108 40.7
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 3.0e-16 89.7 119 41.2
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 3.0e-16 89.7 119 41.2
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.9e-15 87.0 81 48.1
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 3.3e-15 86.3 110 45.5
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 4.4e-12 75.9 103 40.8
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-11 74.3 71 47.9
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 4.9e-11 72.4 74 48.6
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 6.4e-11 72.0 71 45.1
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 5.4e-10 68.9 189 27.5
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 2.5e-07 60.1 67 49.3


User provided reference genes

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