Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 1.9e-286 988.4 486 100.0
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 3.8e-282 974.2 486 98.6
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 9.4e-265 916.4 485 91.5
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 8.5e-234 813.5 477 84.1
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 4.0e-199 698.4 540 68.3
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 1.2e-195 686.8 491 68.4
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 1.3e-194 683.3 501 68.3
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 4.7e-192 674.9 499 66.7
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 1.1e-185 653.7 484 67.4
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 1.1e-185 653.7 493 66.1
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 7.3e-185 651.0 495 65.9
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 1.6e-184 649.8 496 64.9
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 4.0e-183 645.2 490 63.9
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 2.0e-182 642.9 496 65.3
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 2.0e-182 642.9 496 65.3
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 3.4e-182 642.1 440 70.9
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 8.4e-181 637.5 485 65.2
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 7.9e-179 630.9 494 62.3
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 1.3e-178 630.2 485 65.4
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 1.8e-178 629.8 491 64.0
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 8.7e-178 627.5 490 63.7
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 2.5e-177 625.9 495 64.4
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 5.6e-177 624.8 452 67.3
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 1.6e-176 623.2 498 62.2
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 2.8e-176 622.5 489 62.6
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 3.6e-176 622.1 495 64.4
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 3.6e-176 622.1 494 62.3
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 4.8e-176 621.7 496 63.1
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 1.4e-175 620.2 477 63.3
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 2.4e-175 619.4 538 58.2
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 6.9e-175 617.8 497 61.0
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 1.5e-174 616.7 429 66.7
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 2.0e-174 616.3 497 61.6
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 2.6e-174 615.9 492 61.6
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 2.6e-174 615.9 484 61.8
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 2.6e-174 615.9 418 67.9
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 3.4e-174 615.5 490 62.4
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 4.5e-174 615.1 464 64.9
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 5.8e-174 614.8 492 61.2
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 5.8e-174 614.8 481 64.2
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 9.9e-174 614.0 490 61.6
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 2.2e-173 612.8 491 61.9
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 2.2e-173 612.8 477 62.9
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 2.9e-173 612.5 498 62.7
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 4.9e-173 611.7 447 65.1
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 4.9e-173 611.7 484 64.3
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 6.4e-173 611.3 488 61.5
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 6.4e-173 611.3 424 67.5
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 8.4e-173 610.9 500 61.2
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 1.1e-172 610.5 491 62.1
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 1.4e-172 610.1 491 61.9
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.4e-172 610.1 427 72.8
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 2.4e-172 609.4 480 61.5
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 2.4e-172 609.4 495 62.8
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 5.5e-172 608.2 446 65.2
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 1.2e-171 607.1 495 62.6
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 2.1e-171 606.3 508 62.2
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 2.7e-171 605.9 482 61.8
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 4.6e-171 605.1 431 67.5
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 7.9e-171 604.4 503 60.6
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 7.9e-171 604.4 497 60.8
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.8e-170 603.2 487 62.4
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 3.0e-170 602.4 507 60.4
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 5.1e-170 601.7 457 62.6
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 5.1e-170 601.7 536 57.5
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 1.1e-169 600.5 487 62.6
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 4.3e-169 598.6 385 74.3
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 7.4e-169 597.8 495 60.8
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 1.6e-168 596.7 379 71.8
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 2.8e-168 595.9 439 65.1
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 6.2e-168 594.7 492 60.8
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 2.9e-165 585.9 490 60.6
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.5e-164 582.8 509 58.9
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 5.5e-164 581.6 465 61.5
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 2.1e-163 579.7 437 67.0
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 3.5e-163 578.9 400 67.0
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 6.0e-163 578.2 404 69.6
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 9.6e-161 570.9 429 63.2
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 3.1e-159 565.8 404 65.8
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 2.9e-157 559.3 496 58.5
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 3.2e-156 555.8 396 65.7
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 2.1e-155 553.1 389 68.4
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 5.1e-154 548.5 511 56.4
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 3.3e-153 545.8 457 59.3
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 9.7e-153 544.3 459 56.9
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 1.2e-150 537.3 482 56.8
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 3.8e-149 532.3 362 71.0
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 8.5e-149 531.2 403 63.5
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 8.8e-146 521.2 493 57.2
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 3.7e-144 515.8 305 78.0
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 1.4e-143 513.8 421 59.1
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 7.2e-140 501.5 510 53.3
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 5.3e-135 485.3 394 60.4
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 4.1e-127 459.1 417 54.0
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 3.5e-126 456.1 387 55.6
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 1.9e-124 450.3 327 65.1
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 4.7e-123 445.7 359 54.9
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 4.0e-122 442.6 392 60.2
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.6e-118 430.6 378 58.2
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 2.1e-115 420.2 330 57.0
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 8.6e-109 398.3 268 70.1
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 1.1e-92 344.7 312 55.1
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 9.9e-89 331.6 350 44.9
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.3e-88 331.3 401 44.6
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 1.7e-88 330.9 254 65.4
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 2.2e-88 330.5 254 65.4
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 7.1e-87 325.5 179 79.9
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 5.6e-84 315.8 240 64.2
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 5.6e-84 315.8 240 64.2
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 9.5e-84 315.1 250 64.4
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 1.2e-83 314.7 250 64.4
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 6.2e-83 312.4 289 53.6
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 2.0e-73 280.8 384 39.1
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 1.4e-63 248.1 225 55.6
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 1.9e-63 247.7 232 55.2
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 7.1e-63 245.7 330 38.8
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 2.6e-57 227.3 196 62.2
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 4.6e-54 216.5 216 52.8
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 6.0e-54 216.1 134 74.6
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 1.2e-41 175.3 106 74.5
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 3.9e-37 160.2 349 32.7
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 3.9e-37 160.2 98 69.4
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 4.5e-33 146.7 92 73.9
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 5.0e-32 143.3 339 31.0
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 3.0e-29 134.0 73 79.5
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 2.2e-19 101.3 55 76.4
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 3.7e-19 100.5 125 42.4
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 5.9e-17 93.2 377 24.9
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 9.1e-10 69.3 106 45.3
CBR_g24397 Chara braunii HOM05D005921 ORTHO05D132278 2.7e-06 57.8 83 31.3


User provided reference genes

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