Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 5.3e-168 594.3 318 100.0
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 2.2e-166 589.0 318 98.7
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.2e-164 583.2 318 97.8
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 2.5e-157 558.9 318 95.0
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 4.0e-155 551.6 318 93.4
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 9.8e-154 547.0 318 91.8
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 1.3e-153 546.6 318 92.5
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.4e-152 543.1 318 91.5
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 1.7e-142 509.6 318 87.7
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 1.5e-141 506.5 318 87.4
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.3e-134 482.6 281 92.5
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 2.5e-133 479.2 319 79.3
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 5.2e-131 471.5 319 79.0
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 6.8e-131 471.1 318 78.0
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 9.8e-130 467.2 318 77.4
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 1.3e-129 466.8 318 76.7
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 1.3e-129 466.8 318 76.7
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.7e-129 466.5 319 78.1
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 2.2e-129 466.1 318 77.7
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 6.4e-129 464.5 319 77.7
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 5.4e-128 461.5 318 77.7
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 9.2e-128 460.7 318 76.4
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 4.6e-127 458.4 318 76.1
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 8.6e-126 454.1 318 76.1
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 8.6e-126 454.1 319 75.5
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.9e-125 453.0 318 76.1
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 4.3e-125 451.8 318 75.2
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 9.5e-125 450.7 319 75.2
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 1.6e-124 449.9 318 75.5
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 2.1e-124 449.5 319 75.2
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 2.8e-124 449.1 363 69.1
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 3.6e-124 448.7 319 76.2
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 3.6e-124 448.7 318 74.2
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.4e-123 446.8 319 74.9
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 3.1e-123 445.7 319 74.9
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 6.8e-123 444.5 318 74.5
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 8.9e-123 444.1 318 73.6
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 1.2e-122 443.7 318 75.2
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 2.0e-122 443.0 319 73.7
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 3.4e-122 442.2 319 74.9
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 5.8e-122 441.4 318 73.0
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 5.8e-122 441.4 318 74.5
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 1.3e-121 440.3 318 73.0
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 1.3e-121 440.3 319 73.7
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 1.7e-121 439.9 319 74.3
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 1.7e-121 439.9 319 73.7
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 2.2e-121 439.5 319 74.3
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 3.7e-121 438.7 319 73.4
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 1.4e-120 436.8 319 73.0
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 2.4e-120 436.0 318 72.6
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 3.2e-120 435.6 318 72.3
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 4.1e-120 435.3 319 73.4
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 4.1e-120 435.3 319 72.7
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 5.4e-120 434.9 318 74.2
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 7.1e-120 434.5 318 73.3
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 9.2e-120 434.1 318 72.3
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.2e-119 433.7 318 73.0
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.2e-119 433.7 319 73.4
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.6e-119 433.3 319 73.4
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 2.7e-119 432.6 318 72.6
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 6.0e-119 431.4 319 73.0
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 1.3e-118 430.3 318 71.7
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 2.3e-118 429.5 318 73.3
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 3.9e-118 428.7 318 72.0
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 3.9e-118 428.7 318 74.2
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 6.6e-118 427.9 320 72.5
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 8.6e-118 427.6 319 72.7
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 1.5e-117 426.8 318 73.3
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 2.5e-117 426.0 320 71.6
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 1.2e-116 423.7 318 70.4
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 1.6e-116 423.3 318 70.4
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 2.1e-116 422.9 315 70.5
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 2.8e-116 422.5 320 71.9
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 6.2e-116 421.4 319 71.5
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 1.8e-115 419.9 318 70.4
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 1.8e-115 419.9 318 70.8
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 8.9e-115 417.5 319 70.2
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.2e-114 417.2 318 70.4
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 1.5e-114 416.8 320 70.0
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 2.0e-114 416.4 319 70.5
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 2.0e-114 416.4 319 69.9
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.3e-113 413.7 318 70.8
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.3e-113 413.7 318 69.5
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.7e-113 413.3 318 72.0
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 2.2e-113 412.9 318 69.8
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 6.4e-113 411.4 321 68.5
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.2e-111 407.1 318 68.2
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 3.0e-110 402.5 318 68.6
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.5e-109 400.2 354 62.7
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.2e-108 397.1 320 67.8
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.6e-108 396.7 320 67.5
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 2.1e-108 396.4 319 66.8
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.8e-108 396.0 319 69.0
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 3.6e-108 395.6 302 70.2
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 3.6e-108 395.6 321 67.0
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 6.2e-108 394.8 302 69.9
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 8.1e-108 394.4 302 69.5
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 1.4e-107 393.7 317 65.0
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 1.8e-107 393.3 294 72.8
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 1.8e-107 393.3 319 66.1
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 5.2e-107 391.7 318 67.0
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 9.0e-107 391.0 305 68.9
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 9.0e-107 391.0 286 74.1
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 2.6e-106 389.4 280 75.4
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.7e-102 376.7 318 68.2
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 3.0e-102 375.9 320 63.8
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 3.9e-102 375.6 294 68.4
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 6.6e-102 374.8 294 67.7
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 1.8e-99 366.7 288 67.7
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 4.0e-99 365.5 256 74.2
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 1.2e-98 364.0 270 70.7
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.7e-97 360.1 270 69.3
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.9e-97 359.4 391 59.6
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 6.0e-95 351.7 319 61.8
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.0e-94 350.9 265 71.7
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 3.9e-94 349.0 318 61.9
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 6.7e-94 348.2 318 64.2
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 9.6e-93 344.4 320 59.1
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 1.1e-91 340.9 318 64.2
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 7.6e-90 334.7 271 64.9
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 3.2e-88 329.3 242 70.7
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.1e-84 316.6 231 74.9
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 5.3e-83 312.0 318 55.3
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 2.8e-76 289.7 228 66.2
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 6.7e-70 268.5 749 31.5
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 1.5e-69 267.3 327 48.9
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 3.4e-66 256.1 314 49.4
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.2e-63 247.7 322 44.1
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 3.7e-60 236.1 181 77.3
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 1.0e-57 228.0 295 47.1
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 2.8e-52 209.9 192 64.6
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.8e-51 207.2 125 93.6
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 2.2e-49 200.3 160 72.5
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.1e-47 193.7 150 73.3
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 2.0e-45 187.2 274 47.4
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 5.5e-40 169.1 109 87.2
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 2.8e-36 156.8 151 60.9
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 8.3e-36 155.2 121 62.8
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 1.1e-35 154.8 252 40.5
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 6.6e-33 145.6 275 40.7
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 1.9e-32 144.1 313 33.9
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.4e-30 137.9 112 66.1
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 9.8e-29 131.7 91 71.4
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 2.3e-25 120.6 93 69.9
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 2.9e-25 120.2 135 56.3
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 1.1e-24 118.2 99 61.6
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 9.5e-24 115.2 128 59.4
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.2e-21 108.2 89 59.6
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 4.4e-21 106.3 111 58.6
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 1.1e-16 91.7 397 27.0
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.5e-16 91.3 67 65.7
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.0e-14 83.2 57 75.4
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.1e-08 65.1 92 45.7
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 2.5e-08 63.9 126 34.9
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 1.4e-06 58.2 42 61.9
HanXRQChr16g0528961 Helianthus annuus HOM05D004764 ORTHO05D005580 1.8e-06 57.8 90 41.1


User provided reference genes

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