Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g071700.3 Solanum lycopersicum HOM05D006546 ORTHO05D008362 7.8e-200 700.3 358 100.0
Sopen04g027680 Solanum pennellii HOM05D006546 ORTHO05D008362 4.7e-197 691.0 358 98.9
PGSC0003DMG400006373 Solanum tuberosum HOM05D006546 ORTHO05D008362 3.0e-191 671.8 358 95.5
Nitab4.5_0006961g0030 Nicotiana tabacum HOM05D006546 ORTHO05D008362 9.6e-174 613.6 358 87.4
Nitab4.5_0001649g0020 Nicotiana tabacum HOM05D006546 ORTHO05D008362 6.2e-165 584.3 358 84.4
Lj4A701T20 Lonicera japonica HOM05D006546 ORTHO05D008362 6.0e-152 541.2 354 79.1
Peaxi162Scf00079g02332 Petunia axillaris HOM05D006546 ORTHO05D008362 3.7e-149 531.9 359 78.0
MSTRG.1097 Avicennia marina HOM05D006546 ORTHO05D008362 4.8e-149 531.6 358 76.3
Cc10_g15070 Coffea canephora HOM05D006546 ORTHO05D008362 5.3e-148 528.1 363 75.2
CSS0026250 Camellia sinensis var. sinensis HOM05D006546 ORTHO05D008362 1.5e-147 526.6 363 75.2
SGA_v2.0_scaffold195G40788 Striga asiatica HOM05D006546 ORTHO05D008362 1.0e-146 523.9 366 74.6
CAN.G264.10 Capsicum annuum HOM05D006546 ORTHO05D008362 6.5e-146 521.2 281 91.8
Migut.C00976 Erythranthe guttata HOM05D006546 ORTHO05D008362 8.4e-146 520.8 360 74.4
SalBow7G0432 Salvia bowleyana HOM05D006546 ORTHO05D008362 1.6e-144 516.5 358 74.0
GSVIVG01034559001 Vitis vinifera HOM05D006546 ORTHO05D008362 4.6e-144 515.0 356 75.8
Actinidia17779 Actinidia chinensis HOM05D006546 ORTHO05D008362 1.3e-143 513.5 359 74.9
Lsat_1_v5_gn_1_5280 Lactuca sativa HOM05D006546 ORTHO05D008362 3.9e-143 511.9 344 76.7
HanXRQChr04g0115661 Helianthus annuus HOM05D006546 ORTHO05D008362 3.3e-142 508.8 328 80.2
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 3.3e-142 508.8 302 83.1
CANSAT25G3312 Cannabis sativa HOM05D006546 ORTHO05D008362 1.3e-141 506.9 337 76.3
Atru.chr13.2063_Atru.chr13.2062 Acer truncatum HOM05D006546 ORTHO05D008362 2.2e-141 506.1 333 76.9
vmacro01645 Vaccinium macrocarpon HOM05D006546 ORTHO05D008362 2.2e-141 506.1 347 75.2
Potri.005G194800 Populus trichocarpa HOM05D006546 ORTHO05D008362 1.8e-140 503.1 317 81.1
MD05G1030000 Malus domestica HOM05D006546 ORTHO05D008362 2.4e-140 502.7 337 77.4
Prupe.8G036900 Prunus persica HOM05D006546 ORTHO05D008362 3.1e-140 502.3 364 71.7
arahy.Tifrunner.gnm1.ann1.PKA9SD Arachis hypogaea HOM05D006546 ORTHO05D008362 9.0e-140 500.7 357 72.0
ECA247G1092 Erigeron canadensis HOM05D006546 ORTHO05D008362 7.6e-139 497.7 315 78.4
AUR62040584 Chenopodium quinoa HOM05D006546 ORTHO05D008362 1.0e-138 497.3 309 80.3
FAN20G1322 Fragaria x ananassa HOM05D006546 ORTHO05D008362 1.0e-138 497.3 317 77.6
VMungo0464G1775 Vigna mungo HOM05D006546 ORTHO05D008362 1.0e-138 497.3 328 76.8
CiPaw.16G009700 Carya illinoinensis HOM05D006546 ORTHO05D008362 1.7e-138 496.5 364 70.6
Gorai.002G231100 Gossypium raimondii HOM05D006546 ORTHO05D008362 2.2e-138 496.1 367 70.3
FvH4_2g13270 Fragaria vesca HOM05D006546 ORTHO05D008362 3.8e-138 495.4 317 77.0
Rhsim11G0111500 Rhododendron simsii HOM05D006546 ORTHO05D008362 6.5e-138 494.6 341 74.2
Cfa018304 Carpinus fangiana HOM05D006546 ORTHO05D008362 8.5e-138 494.2 365 69.9
Nn5g28792 Nelumbo nucifera HOM05D006546 ORTHO05D008362 4.2e-137 491.9 368 70.7
Medtr6g037530 Medicago truncatula HOM05D006546 ORTHO05D008362 1.2e-136 490.3 325 76.6
Ca_03250_v3 Cicer arietinum L. HOM05D006546 ORTHO05D008362 2.7e-136 489.2 312 78.5
Psat1g100360 Pisum sativum HOM05D006546 ORTHO05D008362 2.7e-136 489.2 368 69.6
PGR042G3407 Punica granatum HOM05D006546 ORTHO05D008362 2.7e-136 489.2 365 70.7
TWI34G0343 Tripterygium wilfordii HOM05D006546 ORTHO05D008362 3.6e-136 488.8 360 70.3
Manes.18G093500 Manihot esculenta HOM05D006546 ORTHO05D008362 4.6e-136 488.4 351 73.2
Glyma.16G164900 Glycine max HOM05D006546 ORTHO05D008362 1.3e-135 486.9 353 71.4
Phvul.004G092300 Phaseolus vulgaris HOM05D006546 ORTHO05D008362 1.3e-135 486.9 325 76.0
COL.COLO4_03565 Corchorus olitorius HOM05D006546 ORTHO05D008362 3.0e-135 485.7 322 76.7
Haze_17787 Corylus avellana HOM05D006546 ORTHO05D008362 3.0e-135 485.7 367 70.0
PSO541G2164 Papaver somniferum HOM05D006546 ORTHO05D008362 6.7e-135 484.6 352 71.6
Hund17460 Selenicereus undatus HOM05D006546 ORTHO05D008362 8.7e-135 484.2 304 79.3
TAR625G0865 Trochodendron aralioides HOM05D006546 ORTHO05D008362 8.7e-135 484.2 362 70.2
Sc26g0002400 Simmondsia chinensis HOM05D006546 ORTHO05D008362 1.1e-134 483.8 332 75.9
Lj2g0010381 Lotus japonicus HOM05D006546 ORTHO05D008362 1.9e-134 483.0 317 77.9
FAN15G0764 Fragaria x ananassa HOM05D006546 ORTHO05D008362 3.3e-134 482.3 325 75.1
Oeu002061.1 Olea europaea HOM05D006546 ORTHO05D008362 5.7e-134 481.5 303 80.2
Thecc.08G155700 Theobroma cacao HOM05D006546 ORTHO05D008362 9.7e-134 480.7 361 69.0
Cpa.g.sc49.98 Carica papaya HOM05D006546 ORTHO05D008362 3.7e-133 478.8 366 69.7
Duzib093G0633 Durio zibethinus HOM05D006546 ORTHO05D008362 1.1e-132 477.2 319 75.5
QL02p037672 Quercus lobata HOM05D006546 ORTHO05D008362 1.1e-132 477.2 314 77.7
AT1G76730 Arabidopsis thaliana HOM05D006546 ORTHO05D008362 1.4e-132 476.9 326 73.9
MELO3C008332.2 Cucumis melo HOM05D006546 ORTHO05D008362 1.4e-132 476.9 321 74.5
BraA07t30475Z Brassica rapa HOM05D006546 ORTHO05D008362 3.1e-132 475.7 310 76.1
A07p28390 Brassica napus HOM05D006546 ORTHO05D008362 4.1e-132 475.3 310 76.1
Aqoxy6G00397 Aquilegia oxysepala HOM05D006546 ORTHO05D008362 5.3e-132 474.9 362 68.8
AL2G36880 Arabidopsis lyrata HOM05D006546 ORTHO05D008362 5.3e-132 474.9 333 72.7
Sabra05G0148300 Salix brachista HOM05D006546 ORTHO05D008362 3.4e-131 472.2 398 66.3
Aa31LG4G6800 Aethionema arabicum HOM05D006546 ORTHO05D008362 4.5e-131 471.9 345 70.4
CsaV3_6G005120 Cucumis sativus L. HOM05D006546 ORTHO05D008362 5.9e-131 471.5 340 71.2
BcaC08g45513 Brassica carinata HOM05D006546 ORTHO05D008362 1.3e-130 470.3 301 77.1
Carub.0002s2364 Capsella rubella HOM05D006546 ORTHO05D008362 1.3e-130 470.3 313 74.8
C06p31830 Brassica napus HOM05D006546 ORTHO05D008362 2.9e-130 469.2 301 77.4
BolC6t38311H Brassica oleracea HOM05D006546 ORTHO05D008362 2.9e-130 469.2 301 77.4
Sp5g31870 Schrenkiella parvula HOM05D006546 ORTHO05D008362 3.8e-130 468.8 364 67.9
Thhalv10018779m.g Eutrema salsugineum HOM05D006546 ORTHO05D008362 5.0e-130 468.4 313 74.8
QL02p038646 Quercus lobata HOM05D006546 ORTHO05D008362 6.5e-130 468.0 315 76.8
Sed0023841 Sechium edule HOM05D006546 ORTHO05D008362 3.2e-129 465.7 298 77.2
AUR62026675 Chenopodium quinoa HOM05D006546 ORTHO05D008362 2.6e-126 456.1 297 77.1
ATR0584G152 Amborella trichopoda HOM05D006546 ORTHO05D008362 3.3e-126 455.7 360 66.4
BcaB02g07073 Brassica carinata HOM05D006546 ORTHO05D008362 1.1e-124 450.7 285 77.9
EL10Ac1g01586 Beta vulgaris HOM05D006546 ORTHO05D008362 1.4e-124 450.3 351 68.1
Zm00001eb407750 Zea mays HOM05D006546 ORTHO05D008362 1.4e-119 433.7 300 72.0
ClCG08G007080 Citrullus lanatus HOM05D006546 ORTHO05D008362 9.7e-118 427.6 441 54.6
HPP92_004409 Vanilla planifolia HOM05D006546 ORTHO05D008362 8.2e-117 424.5 299 70.6
AagrBONN_evm.TU.Sc2ySwM_228.4531 Anthoceros agrestis HOM05D006546 ORTHO05D008362 1.2e-115 420.6 306 68.6
Mapoly0007s0250 Marchantia polymorpha HOM05D006546 ORTHO05D008362 1.6e-115 420.2 302 69.9
CBR_g53679 Chara braunii HOM05D006546 ORTHO05D008362 2.0e-115 419.9 307 69.4
Pp3c18_17520 Physcomitrium patens HOM05D006546 ORTHO05D008362 1.7e-114 416.8 321 66.0
MBI19_g24720_MAGBIO Magnolia biondii HOM05D006546 ORTHO05D008362 2.5e-113 412.9 509 49.7
Os12g0168000 Oryza sativa ssp. japonica HOM05D006546 ORTHO05D008362 3.2e-113 412.5 300 69.0
SMO340G0128 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 7.5e-110 401.4 288 69.1
arahy.Tifrunner.gnm1.ann1.AD4V0Z Arachis hypogaea HOM05D006546 ORTHO05D008362 8.5e-106 387.9 458 49.6
Ciclev10001828m.g Citrus clementina HOM05D006546 ORTHO05D008362 7.2e-105 384.8 289 70.6
Cre13.g587450 Chlamydomonas reinhardtii HOM05D006546 ORTHO05D008362 2.7e-99 366.3 305 62.6
Eucgr.F02694 Eucalyptus grandis HOM05D006546 ORTHO05D008362 3.5e-99 365.9 212 84.9
FAN27G2273 Fragaria x ananassa HOM05D006546 ORTHO05D008362 1.6e-91 340.5 217 78.8
CsaV3_6G005110 Cucumis sativus L. HOM05D006546 ORTHO05D008362 5.2e-87 325.5 335 54.9
MCO03G555 Micromonas commoda HOM05D006546 ORTHO05D008362 6.8e-87 325.1 322 55.0
CARHR070270 Cardamine hirsuta HOM05D006546 ORTHO05D008362 4.4e-86 322.4 200 80.0
Dinv41054 Davidia involucrata HOM05D006546 ORTHO05D008362 4.3e-81 305.8 170 89.4
Gohir.A01G197500 Gossypium hirsutum HOM05D006546 ORTHO05D008362 1.1e-76 291.2 251 62.9
Ah.14g079510 Amaranthus hybridus HOM05D006546 ORTHO05D008362 3.2e-76 289.7 203 72.9
Gohir.D01G187700 Gossypium hirsutum HOM05D006546 ORTHO05D008362 5.4e-76 288.9 251 62.5
TPR.G28004 Trifolium pratense HOM05D006546 ORTHO05D008362 2.3e-74 283.5 357 49.0
TPR.G39968 Trifolium pratense HOM05D006546 ORTHO05D008362 2.3e-74 283.5 166 83.1
SMO137G0185 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 4.3e-73 279.3 257 53.3
Ah.00g001170 Amaranthus hybridus HOM05D006546 ORTHO05D008362 2.3e-71 273.5 194 72.2
Ah.14g079490 Amaranthus hybridus HOM05D006546 ORTHO05D008362 5.2e-71 272.3 194 71.6
FAN24G0701 Fragaria x ananassa HOM05D006546 ORTHO05D008362 2.0e-70 270.4 189 74.1
RcHm_v2.0_Chr6g0274681 Rosa chinensis HOM05D006546 ORTHO05D008362 8.3e-69 265.0 167 79.0
THA.LOC104810664 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 1.3e-66 257.7 149 83.9
Glyma.02G080402 Glycine max HOM05D006546 ORTHO05D008362 2.4e-60 236.9 144 76.4
SMO182G0010 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 1.6e-59 234.2 259 47.9
THA.LOC104803355 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 4.6e-59 232.6 207 61.8
Eucgr.K02158 Eucalyptus grandis HOM05D006546 ORTHO05D008362 1.0e-58 231.5 188 63.8
THA.LOC104820721 Tarenaya hassleriana HOM05D006546 ORTHO05D008362 2.9e-53 213.4 141 73.8
Ah.04g160680 Amaranthus hybridus HOM05D006546 ORTHO05D008362 1.6e-40 171.0 108 77.8
SEGI_13550 Sequoiadendron giganteum HOM05D006546 ORTHO05D008362 1.1e-36 158.3 97 74.2
CDE08G0315 Ceratophyllum demersum HOM05D006546 ORTHO05D008362 8.2e-32 142.1 144 56.9
MCO02G484 Micromonas commoda HOM05D006546 ORTHO05D008362 8.2e-32 142.1 238 35.7
ECA247G1774 Erigeron canadensis HOM05D006546 ORTHO05D000004 1.4e-28 131.3 80 80.0
SMO063G0001 Selaginella moellendorffii HOM05D006546 ORTHO05D008362 2.2e-24 117.5 102 55.9
Hund17461 Selenicereus undatus HOM05D000185 ORTHO05D000105 9.0e-23 112.1 258 32.6
Medtr6g037560 Medicago truncatula HOM05D006546 ORTHO05D008362 1.5e-14 84.7 49 73.5
AagrBONN_evm.TU.Sc2ySwM_228.4528 Anthoceros agrestis HOM05D006546 ORTHO05D008362 3.6e-11 73.6 58 63.8
Sabra02G0052700 Salix brachista HOM05D003387 ORTHO05D005400 1.7e-08 64.7 71 49.3


User provided reference genes

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