Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g071610.4 Solanum lycopersicum HOM05D002879 ORTHO05D002930 1.0e-45 186.8 126 100.0
Sopen04g027590 Solanum pennellii HOM05D002879 ORTHO05D002930 1.1e-36 156.8 100 100.0
PGSC0003DMG400006662 Solanum tuberosum HOM05D002879 ORTHO05D002930 8.9e-34 147.1 100 95.0
CAN.G264.2 Capsicum annuum HOM05D002879 ORTHO05D002930 4.7e-27 124.8 91 92.3
CAN.G264.3 Capsicum annuum HOM05D002879 ORTHO05D002930 1.8e-26 122.9 59 96.6
Nitab4.5_0001187g0090 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.2e-25 120.2 93 78.5
Nitab4.5_0002764g0010 Nicotiana tabacum HOM05D002879 ORTHO05D002930 2.2e-24 115.9 93 76.3
Sopen04g027560 Solanum pennellii HOM05D002879 ORTHO05D002930 4.9e-24 114.8 90 84.4
CAN.G264.1 Capsicum annuum HOM05D002879 ORTHO05D002930 8.4e-24 114.0 95 84.2
PGSC0003DMG400024093 Solanum tuberosum HOM05D002879 ORTHO05D002930 1.1e-23 113.6 88 86.4
Peaxi162Scf00599g00115 Petunia axillaris HOM05D002879 ORTHO05D002930 1.2e-22 110.2 91 76.9
Nitab4.5_0001187g0070 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.6e-22 109.8 82 92.7
Solyc04g071600.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 1.6e-22 109.8 98 79.6
Peaxi162Scf00599g00009 Petunia axillaris HOM05D002879 ORTHO05D002930 4.6e-22 108.2 80 91.2
Solyc04g071590.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 1.5e-20 103.2 90 80.0
Nitab4.5_0002764g0050 Nicotiana tabacum HOM05D002879 ORTHO05D002930 2.5e-20 102.4 78 83.3
Sopen04g027570 Solanum pennellii HOM05D002879 ORTHO05D002930 2.5e-20 102.4 88 80.7
Sopen04g027580 Solanum pennellii HOM05D002879 ORTHO05D002930 2.5e-20 102.4 98 75.5
Solyc04g071580.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 9.6e-20 100.5 81 74.1
Peaxi162Scf01294g00118 Petunia axillaris HOM05D002879 ORTHO05D002930 1.3e-19 100.1 88 75.0
Cfa018310 Carpinus fangiana HOM05D002879 ORTHO05D002930 4.8e-19 98.2 93 77.4
TAR625G0538 Trochodendron aralioides HOM05D002879 ORTHO05D002930 1.8e-18 96.3 95 57.9
PGSC0003DMG400006663 Solanum tuberosum HOM05D002879 ORTHO05D002930 4.0e-18 95.1 88 79.5
FvH4_2g13410 Fragaria vesca HOM05D002879 ORTHO05D002930 9.0e-18 94.0 95 74.7
Haze_17773 Corylus avellana HOM05D002879 ORTHO05D002930 2.0e-17 92.8 103 61.2
Lalb_Chr03g0035371 Lupinus albus HOM05D002879 ORTHO05D002930 2.6e-17 92.4 94 64.9
Hund17173 Selenicereus undatus HOM05D002879 ORTHO05D002930 3.4e-17 92.0 95 69.5
Ah.05g168050 Amaranthus hybridus HOM05D002879 ORTHO05D002930 4.4e-17 91.7 89 75.3
QL02p029929 Quercus lobata HOM05D002879 ORTHO05D002930 9.9e-17 90.5 91 73.6
AUR62026685 Chenopodium quinoa HOM05D002879 ORTHO05D002930 2.2e-16 89.4 54 77.8
arahy.Tifrunner.gnm1.ann1.HS8YG8 Arachis hypogaea HOM05D002879 ORTHO05D002930 4.9e-16 88.2 89 70.8
HPP92_009298 Vanilla planifolia HOM05D002879 ORTHO05D002930 1.1e-15 87.0 94 73.4
Atru.chr13.2082 Acer truncatum HOM05D002879 ORTHO05D002930 1.4e-15 86.7 97 72.2
Haze_17772 Corylus avellana HOM05D002879 ORTHO05D002930 1.9e-15 86.3 103 60.2
MBI09_g23868_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 1.9e-15 86.3 95 72.6
Thecc.08G154600 Theobroma cacao HOM05D002879 ORTHO05D002930 2.4e-15 85.9 55 72.7
Rhsim11G0084500 Rhododendron simsii HOM05D002879 ORTHO05D002930 3.2e-15 85.5 98 60.2
Hund26910 Selenicereus undatus HOM05D002879 ORTHO05D002930 4.2e-15 85.1 95 72.6
Actinidia29536 Actinidia chinensis HOM05D002879 ORTHO05D002930 5.4e-15 84.7 52 73.1
arahy.Tifrunner.gnm1.ann1.4DJY3R Arachis hypogaea HOM05D002879 ORTHO05D002930 5.4e-15 84.7 55 70.9
arahy.Tifrunner.gnm1.ann1.MV46JJ Arachis hypogaea HOM05D002879 ORTHO05D002930 5.4e-15 84.7 55 70.9
CSS0043717 Camellia sinensis var. sinensis HOM05D002879 ORTHO05D002930 7.1e-15 84.3 95 70.5
Glyma.10G224300 Glycine max HOM05D002879 ORTHO05D002930 7.1e-15 84.3 89 71.9
Sc26g0002520 Simmondsia chinensis HOM05D002879 ORTHO05D002930 7.1e-15 84.3 51 76.5
TAR625G0963 Trochodendron aralioides HOM05D002879 ORTHO05D002930 9.3e-15 84.0 95 50.5
Rhsim11G0085100 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.2e-14 83.6 93 69.9
vmacro12405 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.6e-14 83.2 97 64.9
AUR62040595 Chenopodium quinoa HOM05D002879 ORTHO05D002930 2.1e-14 82.8 55 70.9
Migut.N01983 Erythranthe guttata HOM05D002879 ORTHO05D002930 2.1e-14 82.8 78 70.5
Potri.005G193901 Populus trichocarpa HOM05D002879 ORTHO05D002930 2.1e-14 82.8 59 66.1
Actinidia29538 Actinidia chinensis HOM05D002879 ORTHO05D002930 2.7e-14 82.4 59 66.1
Eucgr.E02058 Eucalyptus grandis HOM05D002879 ORTHO05D002930 2.7e-14 82.4 94 69.1
THA.LOC104809205 Tarenaya hassleriana HOM05D002879 ORTHO05D002930 3.5e-14 82.0 88 54.5
Sc26g0002530 Simmondsia chinensis HOM05D002879 ORTHO05D002930 4.6e-14 81.6 51 74.5
EL10Ac1g01576 Beta vulgaris HOM05D002879 ORTHO05D002930 7.9e-14 80.9 101 67.3
Migut.I00192 Erythranthe guttata HOM05D002879 ORTHO05D002930 7.9e-14 80.9 80 76.2
Hund26690 Selenicereus undatus HOM05D002879 ORTHO05D002930 1.0e-13 80.5 49 75.5
PGSC0003DMG400006661 Solanum tuberosum HOM05D002879 ORTHO05D002930 1.0e-13 80.5 87 71.3
EL10Ac1g01570 Beta vulgaris HOM05D002879 ORTHO05D002930 3.0e-13 79.0 49 77.6
Os02g0543000 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 3.0e-13 79.0 47 76.6
Migut.N02014 Erythranthe guttata HOM05D002879 ORTHO05D002930 3.9e-13 78.6 75 53.3
Rhsim11G0084200 Rhododendron simsii HOM05D002879 ORTHO05D002930 3.9e-13 78.6 95 65.3
vmacro01469 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 5.1e-13 78.2 94 71.3
Lj5g0010855 Lotus japonicus HOM05D002879 ORTHO05D002930 6.6e-13 77.8 48 70.8
arahy.Tifrunner.gnm1.ann1.4FY7U3 Arachis hypogaea HOM05D002879 ORTHO05D002930 8.7e-13 77.4 88 73.9
SEGI_09931 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 8.7e-13 77.4 61 65.6
Ah.05g168060 Amaranthus hybridus HOM05D002879 ORTHO05D002930 1.1e-12 77.0 91 64.8
EL10Ac1g01577 Beta vulgaris HOM05D002879 ORTHO05D002930 1.1e-12 77.0 49 65.3
Rhsim11G0084100 Rhododendron simsii HOM05D000132 ORTHO05D000058 1.1e-12 77.0 88 72.7
Rhsim11G0084700 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.1e-12 77.0 90 65.6
vmacro01464 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.1e-12 77.0 89 70.8
vmacro23419 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.1e-12 77.0 89 70.8
Haze_17769 Corylus avellana HOM05D002879 ORTHO05D002930 1.9e-12 76.3 51 74.5
vmacro23421 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.9e-12 76.3 48 68.8
CiPaw.15G015000 Carya illinoinensis HOM05D002879 ORTHO05D002930 2.5e-12 75.9 102 64.7
Ca_23081_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 2.5e-12 75.9 94 68.1
Sc02g0003910 Simmondsia chinensis HOM05D002879 ORTHO05D002930 2.5e-12 75.9 94 68.1
TPR.G22164 Trifolium pratense HOM05D002879 ORTHO05D002930 2.5e-12 75.9 55 60.0
vmacro01468 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 2.5e-12 75.9 51 66.7
Migut.C00982 Erythranthe guttata HOM05D002879 ORTHO05D002930 4.3e-12 75.1 47 68.1
Actinidia04759 Actinidia chinensis HOM05D002879 ORTHO05D002930 5.6e-12 74.7 89 65.2
Sc26g0002500 Simmondsia chinensis HOM05D002879 ORTHO05D002930 5.6e-12 74.7 90 70.0
Actinidia17783 Actinidia chinensis HOM05D002879 ORTHO05D002930 7.4e-12 74.3 47 66.0
Migut.N01982 Erythranthe guttata HOM05D002879 ORTHO05D002930 7.4e-12 74.3 74 51.4
Migut.N02015 Erythranthe guttata HOM05D002879 ORTHO05D002930 7.4e-12 74.3 74 51.4
TWI34G0242 Tripterygium wilfordii HOM05D002879 ORTHO05D002930 7.4e-12 74.3 41 80.5
Ciclev10002644m.g Citrus clementina HOM05D002879 ORTHO05D002930 9.6e-12 73.9 52 67.3
Migut.C00983 Erythranthe guttata HOM05D002879 ORTHO05D002930 9.6e-12 73.9 80 75.0
FAN24G2761 Fragaria x ananassa HOM05D002879 ORTHO05D002930 9.6e-12 73.9 95 67.4
Rhsim11G0084400 Rhododendron simsii HOM05D002879 ORTHO05D002930 9.6e-12 73.9 90 65.6
SEGI_40905 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 1.6e-11 73.2 58 63.8
Potri.005G193800 Populus trichocarpa HOM05D002879 ORTHO05D002930 2.1e-11 72.8 74 51.4
GSVIVG01034550001 Vitis vinifera HOM05D002879 ORTHO05D002930 2.1e-11 72.8 59 64.4
Manes.02G180800 Manihot esculenta HOM05D002879 ORTHO05D002930 3.6e-11 72.0 99 41.4
Oeu046047.1 Olea europaea HOM05D002879 ORTHO05D002930 3.6e-11 72.0 87 62.1
Cc10_g14940 Coffea canephora HOM05D002879 ORTHO05D002930 6.2e-11 71.2 98 65.3
Rhsim11G0084800 Rhododendron simsii HOM05D002879 ORTHO05D002930 6.2e-11 71.2 52 63.5
vmacro02691 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 6.2e-11 71.2 59 59.3
MBI09_g20569_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 8.1e-11 70.9 95 65.3
MBI09_g23867_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 8.1e-11 70.9 95 65.3
Sc26g0002490 Simmondsia chinensis HOM05D002879 ORTHO05D002930 8.1e-11 70.9 83 43.4
Rhsim11G0084300 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.4e-10 70.1 90 64.4
AUR62026684 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.8e-10 69.7 98 59.2
Medtr1g098680 Medicago truncatula HOM05D002879 ORTHO05D002930 1.8e-10 69.7 95 61.1
Rhsim11G0084600 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.8e-10 69.7 52 63.5
Migut.C00980 Erythranthe guttata HOM05D002879 ORTHO05D002930 2.4e-10 69.3 71 54.9
Prupe.8G034100 Prunus persica HOM05D002879 ORTHO05D002930 2.4e-10 69.3 93 63.4
Rhsim11G0085000 Rhododendron simsii HOM05D002879 ORTHO05D002930 2.4e-10 69.3 44 72.7
Psat1g101880 Pisum sativum HOM05D002879 ORTHO05D002930 4.0e-10 68.6 61 62.3
Rhsim13G0037600 Rhododendron simsii HOM05D002879 ORTHO05D002930 4.0e-10 68.6 62 54.8
TPR.G31183 Trifolium pratense HOM05D002879 ORTHO05D002930 5.3e-10 68.2 88 46.6
vmacro02690 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 6.9e-10 67.8 47 72.3
AUR62014500 Chenopodium quinoa HOM05D002879 ORTHO05D002930 9.0e-10 67.4 51 62.7
AUR62026686 Chenopodium quinoa HOM05D002879 ORTHO05D002930 9.0e-10 67.4 105 58.1
AUR62038035 Chenopodium quinoa HOM05D002879 ORTHO05D002930 9.0e-10 67.4 51 62.7
AUR62038038 Chenopodium quinoa HOM05D002879 ORTHO05D002930 9.0e-10 67.4 51 62.7
Eucgr.E02063 Eucalyptus grandis HOM05D002879 ORTHO05D002930 9.0e-10 67.4 51 62.7
SEGI_08871 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 9.0e-10 67.4 53 64.2
vmacro12406 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 9.0e-10 67.4 47 66.0
Aqoxy5G02058 Aquilegia oxysepala HOM05D002879 ORTHO05D002930 1.2e-09 67.0 47 61.7
AUR62026683 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.2e-09 67.0 85 68.2
Duzib116G0596 Durio zibethinus HOM05D002879 ORTHO05D002930 1.2e-09 67.0 93 46.2
Nitab4.5_0001187g0080 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.2e-09 67.0 47 68.1
CiPaw.16G010900 Carya illinoinensis HOM05D002879 ORTHO05D002930 1.5e-09 66.6 92 65.2
AUR62035549 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.5e-09 66.6 89 66.3
AUR62038034 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.5e-09 66.6 89 66.3
AUR62038037 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.5e-09 66.6 89 66.3
Os01g0959100 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 1.5e-09 66.6 79 70.9
Eucgr.F04219 Eucalyptus grandis HOM05D002879 ORTHO05D002930 2.0e-09 66.2 93 64.5
QL02p029894 Quercus lobata HOM05D002255 ORTHO05D002288 2.6e-09 65.9 97 62.9
Sc26g0003520 Simmondsia chinensis HOM05D002879 ORTHO05D002930 2.6e-09 65.9 85 68.2
EL10Ac1g00648 Beta vulgaris HOM05D002879 ORTHO05D002930 5.8e-09 64.7 57 61.4
Cpa.g.sc21.214 Carica papaya HOM05D002879 ORTHO05D002930 5.8e-09 64.7 87 57.5
Eucgr.E02068 Eucalyptus grandis HOM05D002879 ORTHO05D002930 5.8e-09 64.7 55 60.0
Ca_12311_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 7.6e-09 64.3 101 61.4
vmacro02689 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 7.6e-09 64.3 47 68.1
FAN15G0525 Fragaria x ananassa HOM05D002879 ORTHO05D002930 9.9e-09 63.9 95 62.1
Cc10_g14960 Coffea canephora HOM05D002879 ORTHO05D002930 1.3e-08 63.5 84 69.0
Sed0017062 Sechium edule HOM05D002879 ORTHO05D002930 1.7e-08 63.2 90 60.0
AUR62014501 Chenopodium quinoa HOM05D002879 ORTHO05D002930 2.2e-08 62.8 49 63.3
COL.COLO4_29859 Corchorus olitorius HOM05D002879 ORTHO05D002930 2.2e-08 62.8 90 63.3
Eucgr.F02697 Eucalyptus grandis HOM05D002879 ORTHO05D002930 2.2e-08 62.8 92 59.8
Lj2g0004069 Lotus japonicus HOM05D002879 ORTHO05D002930 2.2e-08 62.8 97 57.7
MELO3C025026.2 Cucumis melo HOM05D002879 ORTHO05D002930 2.9e-08 62.4 91 46.2
MD10G1029000 Malus domestica HOM05D002879 ORTHO05D002930 2.9e-08 62.4 48 62.5
Oeu046050.1 Olea europaea HOM05D002879 ORTHO05D002930 2.9e-08 62.4 75 73.3
QL02p029925 Quercus lobata HOM05D002879 ORTHO05D002930 2.9e-08 62.4 63 76.2
Eucgr.E02071 Eucalyptus grandis HOM05D002879 ORTHO05D002930 3.8e-08 62.0 83 43.4
Actinidia04758 Actinidia chinensis HOM05D002879 ORTHO05D002930 4.9e-08 61.6 55 58.2
Actinidia29537 Actinidia chinensis HOM05D002879 ORTHO05D002930 4.9e-08 61.6 55 60.0
vmacro01467 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 6.4e-08 61.2 45 60.0
CAN.G264.4 Capsicum annuum HOM05D002879 ORTHO05D002930 8.4e-08 60.8 89 57.3
Zm00001eb263060 Zea mays HOM05D002879 ORTHO05D002930 8.4e-08 60.8 47 55.3
Lsat_1_v5_gn_9_41200 Lactuca sativa HOM05D002879 ORTHO05D002930 1.1e-07 60.5 47 59.6
Dinv41066 Davidia involucrata HOM05D002879 ORTHO05D002930 1.4e-07 60.1 89 50.6
Hma1.2p1_0240F.1_g100350 Hydrangea macrophylla HOM05D002879 ORTHO05D002930 3.2e-07 58.9 72 66.7
Eucgr.E02069 Eucalyptus grandis HOM05D002879 ORTHO05D002930 4.2e-07 58.5 87 41.4
AUR62040599 Chenopodium quinoa HOM05D002879 ORTHO05D002930 5.5e-07 58.2 52 57.7
Zm00001eb362480 Zea mays HOM05D002879 ORTHO05D002930 5.5e-07 58.2 46 54.3
arahy.Tifrunner.gnm1.ann1.BF4CMP Arachis hypogaea HOM05D002879 ORTHO05D002930 7.1e-07 57.8 48 60.4
EL10Ac1g01574 Beta vulgaris HOM05D002879 ORTHO05D002930 7.1e-07 57.8 58 51.7
Ciclev10002747m.g Citrus clementina HOM05D002879 ORTHO05D002930 7.1e-07 57.8 52 55.8
Ciclev10002749m.g Citrus clementina HOM05D002879 ORTHO05D002930 7.1e-07 57.8 52 55.8
MD05G1028100 Malus domestica HOM05D002879 ORTHO05D002930 7.1e-07 57.8 51 54.9
Medtr0583s0010 Medicago truncatula HOM05D002879 ORTHO05D002930 7.1e-07 57.8 48 62.5
TAR381G1351 Trochodendron aralioides HOM05D002879 ORTHO05D002930 7.1e-07 57.8 106 56.6
Eucgr.E02065 Eucalyptus grandis HOM05D002879 ORTHO05D002930 1.2e-06 57.0 87 40.2
Eucgr.E02070 Eucalyptus grandis HOM05D002879 ORTHO05D002930 1.6e-06 56.6 87 40.2
Manes.02G181000 Manihot esculenta HOM05D002879 ORTHO05D002930 2.1e-06 56.2 99 37.4
arahy.Tifrunner.gnm1.ann1.HFKS8W Arachis hypogaea HOM05D002879 ORTHO05D002930 2.7e-06 55.8 93 59.1
Hund17450 Selenicereus undatus HOM05D056215 ORTHO05D002930 2.7e-06 55.8 54 51.9
Eucgr.E02064 Eucalyptus grandis HOM05D002879 ORTHO05D002930 3.5e-06 55.5 94 41.5
vmacro23422 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 3.5e-06 55.5 52 50.0
Rhsim13G0015600 Rhododendron simsii HOM05D002879 ORTHO05D002930 4.6e-06 55.1 58 46.6
CsaV3_6G002580 Cucumis sativus L. HOM05D002879 ORTHO05D002930 6.0e-06 54.7 91 60.4
AUR62040592 Chenopodium quinoa HOM05D002879 ORTHO05D002930 7.9e-06 54.3 85 63.5
SMO277G0001 Selaginella moellendorffii HOM05D030254 ORTHO05D002930 7.9e-06 54.3 47 55.3
SEGI_17221 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 7.9e-06 54.3 44 56.8


User provided reference genes

Program Settings