Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g071600.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 6.7e-38 160.6 109 100.0
Sopen04g027580 Solanum pennellii HOM05D002879 ORTHO05D002930 2.7e-34 148.7 109 94.5
PGSC0003DMG400006663 Solanum tuberosum HOM05D002879 ORTHO05D002930 6.1e-31 137.5 98 98.0
Solyc04g071590.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 1.0e-30 136.7 109 87.2
Sopen04g027570 Solanum pennellii HOM05D002879 ORTHO05D002930 7.0e-27 124.0 109 82.6
CAN.G264.1 Capsicum annuum HOM05D002879 ORTHO05D002930 7.2e-24 114.0 106 81.1
Peaxi162Scf00599g00115 Petunia axillaris HOM05D002879 ORTHO05D002930 6.1e-23 110.9 108 73.1
Sopen04g027560 Solanum pennellii HOM05D002879 ORTHO05D002930 1.8e-22 109.4 110 75.5
Solyc04g071610.4 Solanum lycopersicum HOM05D002879 ORTHO05D002930 5.2e-22 107.8 98 79.6
Sopen04g027590 Solanum pennellii HOM05D002879 ORTHO05D002930 5.2e-22 107.8 98 79.6
PGSC0003DMG400024093 Solanum tuberosum HOM05D002879 ORTHO05D002930 5.2e-22 107.8 109 76.1
PGSC0003DMG400006662 Solanum tuberosum HOM05D002879 ORTHO05D002930 6.8e-22 107.5 108 77.8
Nitab4.5_0001187g0090 Nicotiana tabacum HOM05D002879 ORTHO05D002930 6.3e-20 100.9 88 73.9
Solyc04g071580.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 1.4e-19 99.8 101 67.3
Nitab4.5_0002764g0010 Nicotiana tabacum HOM05D002879 ORTHO05D002930 7.0e-19 97.4 108 65.7
CAN.G264.2 Capsicum annuum HOM05D002879 ORTHO05D002930 5.9e-18 94.4 103 77.7
Actinidia29538 Actinidia chinensis HOM05D002879 ORTHO05D002930 1.0e-17 93.6 65 72.3
Hund17173 Selenicereus undatus HOM05D002879 ORTHO05D002930 1.0e-17 93.6 109 67.0
AUR62040595 Chenopodium quinoa HOM05D002879 ORTHO05D002930 6.6e-17 90.9 67 65.7
AUR62026685 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.9e-16 89.4 66 65.2
CAN.G264.3 Capsicum annuum HOM05D002879 ORTHO05D002930 1.2e-15 86.7 67 67.2
Nitab4.5_0001187g0070 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.2e-15 86.7 102 68.6
Peaxi162Scf00599g00009 Petunia axillaris HOM05D002879 ORTHO05D002930 1.2e-15 86.7 50 78.0
Nitab4.5_0002764g0050 Nicotiana tabacum HOM05D002879 ORTHO05D002930 6.1e-15 84.3 98 64.3
Actinidia29536 Actinidia chinensis HOM05D002879 ORTHO05D002930 1.0e-14 83.6 66 63.6
EL10Ac1g01576 Beta vulgaris HOM05D002879 ORTHO05D002930 1.8e-14 82.8 69 62.3
Cfa018310 Carpinus fangiana HOM05D002879 ORTHO05D002930 2.3e-14 82.4 110 67.3
FvH4_2g13410 Fragaria vesca HOM05D002879 ORTHO05D002930 3.0e-14 82.0 89 77.5
Hund26910 Selenicereus undatus HOM05D002879 ORTHO05D002930 3.0e-14 82.0 97 76.3
Ah.05g168050 Amaranthus hybridus HOM05D002879 ORTHO05D002930 8.9e-14 80.5 89 76.4
Haze_17773 Corylus avellana HOM05D002879 ORTHO05D002930 3.4e-13 78.6 111 55.9
Haze_17772 Corylus avellana HOM05D002879 ORTHO05D002930 5.8e-13 77.8 64 64.1
Potri.005G193901 Populus trichocarpa HOM05D002879 ORTHO05D002930 5.8e-13 77.8 65 58.5
Atru.chr13.2082 Acer truncatum HOM05D002879 ORTHO05D002930 2.2e-12 75.9 98 44.9
Peaxi162Scf01294g00118 Petunia axillaris HOM05D002879 ORTHO05D002930 2.2e-12 75.9 85 65.9
GSVIVG01034550001 Vitis vinifera HOM05D002879 ORTHO05D002930 2.9e-12 75.5 66 60.6
MBI09_g23868_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 4.9e-12 74.7 87 77.0
SEGI_09931 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 4.9e-12 74.7 67 61.2
vmacro23421 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 4.9e-12 74.7 48 68.8
AUR62014500 Chenopodium quinoa HOM05D002879 ORTHO05D002930 6.4e-12 74.3 62 62.9
AUR62038035 Chenopodium quinoa HOM05D002879 ORTHO05D002930 6.4e-12 74.3 62 62.9
AUR62038038 Chenopodium quinoa HOM05D002879 ORTHO05D002930 6.4e-12 74.3 62 62.9
Migut.N01983 Erythranthe guttata HOM05D002879 ORTHO05D002930 1.4e-11 73.2 77 68.8
vmacro02691 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.4e-11 73.2 66 60.6
Os02g0543000 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 2.4e-11 72.4 45 71.1
Migut.N02014 Erythranthe guttata HOM05D002879 ORTHO05D002930 4.1e-11 71.6 74 52.7
Thecc.08G154600 Theobroma cacao HOM05D002879 ORTHO05D002930 4.1e-11 71.6 44 72.7
EL10Ac1g01570 Beta vulgaris HOM05D002879 ORTHO05D002930 5.4e-11 71.2 58 60.3
Glyma.10G224300 Glycine max HOM05D002879 ORTHO05D002930 5.4e-11 71.2 47 68.1
TAR625G0538 Trochodendron aralioides HOM05D002879 ORTHO05D002930 5.4e-11 71.2 87 49.4
QL02p029929 Quercus lobata HOM05D002879 ORTHO05D002930 7.0e-11 70.9 143 49.0
EL10Ac1g00648 Beta vulgaris HOM05D002879 ORTHO05D002930 9.2e-11 70.5 68 55.9
Sc26g0002500 Simmondsia chinensis HOM05D002879 ORTHO05D002930 1.6e-10 69.7 108 65.7
vmacro01468 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.6e-10 69.7 43 72.1
Rhsim11G0085000 Rhododendron simsii HOM05D002879 ORTHO05D002930 2.0e-10 69.3 44 72.7
PGSC0003DMG400006661 Solanum tuberosum HOM05D002879 ORTHO05D002930 2.0e-10 69.3 98 64.3
Migut.C00983 Erythranthe guttata HOM05D002879 ORTHO05D002930 2.7e-10 68.9 104 66.3
Migut.I00192 Erythranthe guttata HOM05D002879 ORTHO05D002930 2.7e-10 68.9 80 71.2
Migut.N01982 Erythranthe guttata HOM05D002879 ORTHO05D002930 2.7e-10 68.9 70 52.9
Migut.N02015 Erythranthe guttata HOM05D002879 ORTHO05D002930 2.7e-10 68.9 70 52.9
Potri.005G193800 Populus trichocarpa HOM05D002879 ORTHO05D002930 2.7e-10 68.9 79 45.6
Rhsim11G0084500 Rhododendron simsii HOM05D002879 ORTHO05D002930 3.5e-10 68.6 108 52.8
Hund26690 Selenicereus undatus HOM05D002879 ORTHO05D002930 3.5e-10 68.6 43 69.8
CSS0043717 Camellia sinensis var. sinensis HOM05D002879 ORTHO05D002930 4.6e-10 68.2 86 73.3
Actinidia04758 Actinidia chinensis HOM05D002879 ORTHO05D002930 6.0e-10 67.8 66 56.1
Rhsim11G0084400 Rhododendron simsii HOM05D002879 ORTHO05D002930 6.0e-10 67.8 103 60.2
Actinidia29537 Actinidia chinensis HOM05D002879 ORTHO05D002930 7.8e-10 67.4 66 57.6
SEGI_40905 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 7.8e-10 67.4 82 50.0
TAR625G0963 Trochodendron aralioides HOM05D002879 ORTHO05D002930 7.8e-10 67.4 44 65.9
Lalb_Chr03g0035371 Lupinus albus HOM05D002879 ORTHO05D002930 1.0e-09 67.0 87 56.3
Rhsim11G0085100 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.3e-09 66.6 85 71.8
Sc26g0002520 Simmondsia chinensis HOM05D002879 ORTHO05D002930 1.3e-09 66.6 48 66.7
Rhsim11G0084700 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.7e-09 66.2 103 58.3
vmacro01469 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.7e-09 66.2 92 72.8
EL10Ac1g01577 Beta vulgaris HOM05D002879 ORTHO05D002930 2.3e-09 65.9 44 61.4
Migut.C00982 Erythranthe guttata HOM05D002879 ORTHO05D002930 2.3e-09 65.9 70 51.4
Lj5g0010855 Lotus japonicus HOM05D002879 ORTHO05D002930 2.3e-09 65.9 52 59.6
arahy.Tifrunner.gnm1.ann1.4DJY3R Arachis hypogaea HOM05D002879 ORTHO05D002930 6.6e-09 64.3 53 58.5
arahy.Tifrunner.gnm1.ann1.HS8YG8 Arachis hypogaea HOM05D002879 ORTHO05D002930 6.6e-09 64.3 101 56.4
arahy.Tifrunner.gnm1.ann1.MV46JJ Arachis hypogaea HOM05D002879 ORTHO05D002930 6.6e-09 64.3 53 58.5
Rhsim13G0037600 Rhododendron simsii HOM05D002879 ORTHO05D002930 6.6e-09 64.3 69 55.1
Ah.05g168060 Amaranthus hybridus HOM05D002879 ORTHO05D002930 8.6e-09 63.9 85 68.2
QL02p029894 Quercus lobata HOM05D002255 ORTHO05D002288 8.6e-09 63.9 96 69.8
Rhsim11G0084100 Rhododendron simsii HOM05D000132 ORTHO05D000058 8.6e-09 63.9 88 68.2
Sc26g0002530 Simmondsia chinensis HOM05D002879 ORTHO05D002930 8.6e-09 63.9 48 64.6
THA.LOC104809205 Tarenaya hassleriana HOM05D002879 ORTHO05D002930 8.6e-09 63.9 88 48.9
Actinidia17783 Actinidia chinensis HOM05D002879 ORTHO05D002930 1.1e-08 63.5 43 65.1
vmacro01464 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.1e-08 63.5 135 51.1
vmacro23419 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.1e-08 63.5 135 51.1
Os01g0959100 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 1.9e-08 62.8 35 74.3
vmacro12405 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 2.5e-08 62.4 116 50.9
HPP92_009298 Vanilla planifolia HOM05D002879 ORTHO05D002930 2.5e-08 62.4 85 65.9
AUR62035549 Chenopodium quinoa HOM05D002879 ORTHO05D002930 3.3e-08 62.0 85 71.8
AUR62038034 Chenopodium quinoa HOM05D002879 ORTHO05D002930 3.3e-08 62.0 85 71.8
AUR62038037 Chenopodium quinoa HOM05D002879 ORTHO05D002930 3.3e-08 62.0 85 71.8
FAN24G2761 Fragaria x ananassa HOM05D002879 ORTHO05D002930 3.3e-08 62.0 89 69.7
Medtr1g098680 Medicago truncatula HOM05D002879 ORTHO05D002930 3.3e-08 62.0 44 63.6
SEGI_08871 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 4.3e-08 61.6 85 45.9
Sc26g0003520 Simmondsia chinensis HOM05D002879 ORTHO05D002930 4.3e-08 61.6 82 73.2
Rhsim11G0084300 Rhododendron simsii HOM05D002879 ORTHO05D002930 5.6e-08 61.2 101 59.4
TWI34G0242 Tripterygium wilfordii HOM05D002879 ORTHO05D002930 5.6e-08 61.2 37 70.3
Haze_17769 Corylus avellana HOM05D002879 ORTHO05D002930 7.3e-08 60.8 63 54.0
Ca_23081_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 1.2e-07 60.1 43 58.1
Sc26g0002490 Simmondsia chinensis HOM05D002879 ORTHO05D002930 1.2e-07 60.1 83 38.6
TPR.G22164 Trifolium pratense HOM05D002879 ORTHO05D002930 1.2e-07 60.1 44 56.8
Actinidia04759 Actinidia chinensis HOM05D002879 ORTHO05D002930 1.6e-07 59.7 103 59.2
AUR62014501 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.6e-07 59.7 45 64.4
AUR62026684 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.6e-07 59.7 96 57.3
Ciclev10002644m.g Citrus clementina HOM05D002879 ORTHO05D002930 1.6e-07 59.7 51 60.8
Eucgr.E02058 Eucalyptus grandis HOM05D002879 ORTHO05D002930 1.6e-07 59.7 92 60.9
Sc02g0003910 Simmondsia chinensis HOM05D002879 ORTHO05D002930 1.6e-07 59.7 111 58.6
arahy.Tifrunner.gnm1.ann1.4FY7U3 Arachis hypogaea HOM05D002879 ORTHO05D002930 2.1e-07 59.3 90 64.4
AUR62026686 Chenopodium quinoa HOM05D002879 ORTHO05D002930 3.6e-07 58.5 102 61.8
vmacro12406 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 3.6e-07 58.5 43 60.5
Manes.02G180800 Manihot esculenta HOM05D002879 ORTHO05D002930 4.7e-07 58.2 108 37.0
AUR62026683 Chenopodium quinoa HOM05D002879 ORTHO05D002930 6.2e-07 57.8 85 70.6
Nitab4.5_0001187g0080 Nicotiana tabacum HOM05D002879 ORTHO05D002930 6.2e-07 57.8 43 65.1
Rhsim11G0084200 Rhododendron simsii HOM05D002879 ORTHO05D002930 6.2e-07 57.8 99 39.4
Lsat_1_v5_gn_9_41200 Lactuca sativa HOM05D002879 ORTHO05D002930 8.0e-07 57.4 46 56.5
MBI09_g20569_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 8.0e-07 57.4 86 67.4
MBI09_g23867_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 8.0e-07 57.4 86 67.4
MD10G1029000 Malus domestica HOM05D002879 ORTHO05D002930 8.0e-07 57.4 88 39.8
Zm00001eb263060 Zea mays HOM05D002879 ORTHO05D002930 1.1e-06 57.0 46 54.3
Cc10_g14940 Coffea canephora HOM05D002879 ORTHO05D002930 1.4e-06 56.6 110 56.4
Eucgr.E02063 Eucalyptus grandis HOM05D002879 ORTHO05D002930 2.3e-06 55.8 44 59.1
Psat1g101880 Pisum sativum HOM05D002879 ORTHO05D002930 2.3e-06 55.8 66 47.0
Aqoxy5G02058 Aquilegia oxysepala HOM05D002879 ORTHO05D002930 3.1e-06 55.5 43 55.8
Eucgr.E02068 Eucalyptus grandis HOM05D002879 ORTHO05D002930 5.2e-06 54.7 44 59.1
Ca_12311_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 6.8e-06 54.3 112 58.9
vmacro01467 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 6.8e-06 54.3 66 43.9
CiPaw.15G015000 Carya illinoinensis HOM05D002879 ORTHO05D002930 8.9e-06 53.9 109 54.1
Migut.C00980 Erythranthe guttata HOM05D002879 ORTHO05D002930 8.9e-06 53.9 68 48.5
Rhsim11G0084800 Rhododendron simsii HOM05D002879 ORTHO05D002930 8.9e-06 53.9 50 48.0


User provided reference genes

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