Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g071590.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 1.3e-36 156.4 109 100.0
Sopen04g027570 Solanum pennellii HOM05D002879 ORTHO05D002930 8.5e-33 143.7 109 95.4
Solyc04g071600.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 1.2e-31 139.8 109 87.2
Sopen04g027580 Solanum pennellii HOM05D002879 ORTHO05D002930 7.5e-29 130.6 109 83.5
Peaxi162Scf00599g00115 Petunia axillaris HOM05D002879 ORTHO05D002930 2.0e-26 122.5 108 80.6
PGSC0003DMG400006663 Solanum tuberosum HOM05D002879 ORTHO05D002930 1.3e-25 119.8 98 84.7
PGSC0003DMG400024093 Solanum tuberosum HOM05D002879 ORTHO05D002930 9.5e-24 113.6 109 81.7
Sopen04g027560 Solanum pennellii HOM05D002879 ORTHO05D002930 2.1e-23 112.5 90 85.6
CAN.G264.1 Capsicum annuum HOM05D002879 ORTHO05D002930 4.0e-22 108.2 105 78.1
Nitab4.5_0001187g0090 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.2e-21 106.7 88 75.0
Nitab4.5_0002764g0010 Nicotiana tabacum HOM05D002879 ORTHO05D002930 7.5e-21 104.0 108 70.4
Solyc04g071610.4 Solanum lycopersicum HOM05D002879 ORTHO05D002930 2.2e-20 102.4 90 80.0
Sopen04g027590 Solanum pennellii HOM05D002879 ORTHO05D002930 2.2e-20 102.4 90 80.0
Solyc04g071580.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 6.3e-20 100.9 81 75.3
PGSC0003DMG400006662 Solanum tuberosum HOM05D002879 ORTHO05D002930 7.0e-19 97.4 108 69.4
Nitab4.5_0001187g0070 Nicotiana tabacum HOM05D002879 ORTHO05D002930 2.7e-18 95.5 102 75.5
Hund17173 Selenicereus undatus HOM05D002879 ORTHO05D002930 3.5e-18 95.1 109 65.1
Actinidia29538 Actinidia chinensis HOM05D002879 ORTHO05D002930 1.3e-17 93.2 70 67.1
Nitab4.5_0002764g0050 Nicotiana tabacum HOM05D002879 ORTHO05D002930 2.3e-17 92.4 98 70.4
Peaxi162Scf00599g00009 Petunia axillaris HOM05D002879 ORTHO05D002930 8.6e-17 90.5 52 76.9
CAN.G264.2 Capsicum annuum HOM05D002879 ORTHO05D002930 3.3e-16 88.6 102 67.6
CAN.G264.3 Capsicum annuum HOM05D002879 ORTHO05D002930 7.3e-16 87.4 70 58.6
AUR62026685 Chenopodium quinoa HOM05D002879 ORTHO05D002930 7.3e-16 87.4 66 62.1
Actinidia29536 Actinidia chinensis HOM05D002879 ORTHO05D002930 2.1e-15 85.9 66 63.6
AUR62040595 Chenopodium quinoa HOM05D002879 ORTHO05D002930 8.0e-15 84.0 67 59.7
Peaxi162Scf01294g00118 Petunia axillaris HOM05D002879 ORTHO05D002930 3.0e-14 82.0 85 67.1
Potri.005G193901 Populus trichocarpa HOM05D002879 ORTHO05D002930 3.0e-14 82.0 70 57.1
FvH4_2g13410 Fragaria vesca HOM05D002879 ORTHO05D002930 5.2e-14 81.3 89 74.2
Migut.N01983 Erythranthe guttata HOM05D002879 ORTHO05D002930 6.8e-14 80.9 77 71.4
Thecc.08G154600 Theobroma cacao HOM05D002879 ORTHO05D002930 1.2e-13 80.1 48 75.0
Glyma.10G224300 Glycine max HOM05D002879 ORTHO05D002930 1.5e-13 79.7 51 70.6
Cfa018310 Carpinus fangiana HOM05D002879 ORTHO05D002930 2.0e-13 79.3 108 61.1
Haze_17772 Corylus avellana HOM05D002879 ORTHO05D002930 2.6e-13 79.0 66 56.1
Migut.N02014 Erythranthe guttata HOM05D002879 ORTHO05D002930 2.6e-13 79.0 74 55.4
QL02p029929 Quercus lobata HOM05D002879 ORTHO05D002930 2.6e-13 79.0 86 70.9
SEGI_09931 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 2.6e-13 79.0 70 54.3
Atru.chr13.2082 Acer truncatum HOM05D002879 ORTHO05D002930 3.4e-13 78.6 102 44.1
EL10Ac1g01576 Beta vulgaris HOM05D002879 ORTHO05D002930 3.4e-13 78.6 68 57.4
TAR625G0538 Trochodendron aralioides HOM05D002879 ORTHO05D002930 3.4e-13 78.6 86 51.2
PGSC0003DMG400006661 Solanum tuberosum HOM05D002879 ORTHO05D002930 4.4e-13 78.2 86 73.3
Migut.C00982 Erythranthe guttata HOM05D002879 ORTHO05D002930 5.8e-13 77.8 74 60.8
Ah.05g168050 Amaranthus hybridus HOM05D002879 ORTHO05D002930 9.8e-13 77.0 90 70.0
Haze_17773 Corylus avellana HOM05D002879 ORTHO05D002930 9.8e-13 77.0 110 52.7
Lalb_Chr03g0035371 Lupinus albus HOM05D002879 ORTHO05D002930 9.8e-13 77.0 86 59.3
arahy.Tifrunner.gnm1.ann1.HS8YG8 Arachis hypogaea HOM05D002879 ORTHO05D002930 1.7e-12 76.3 89 64.0
GSVIVG01034550001 Vitis vinifera HOM05D002879 ORTHO05D002930 1.7e-12 76.3 70 57.1
Migut.N01982 Erythranthe guttata HOM05D002879 ORTHO05D002930 2.2e-12 75.9 70 55.7
Migut.N02015 Erythranthe guttata HOM05D002879 ORTHO05D002930 2.2e-12 75.9 70 55.7
Hund26910 Selenicereus undatus HOM05D002879 ORTHO05D002930 2.9e-12 75.5 109 63.3
Migut.I00192 Erythranthe guttata HOM05D002879 ORTHO05D002930 4.9e-12 74.7 80 72.5
Lj5g0010855 Lotus japonicus HOM05D002879 ORTHO05D002930 4.9e-12 74.7 48 66.7
vmacro23421 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 6.4e-12 74.3 48 68.8
arahy.Tifrunner.gnm1.ann1.4DJY3R Arachis hypogaea HOM05D002879 ORTHO05D002930 8.3e-12 73.9 48 68.8
arahy.Tifrunner.gnm1.ann1.MV46JJ Arachis hypogaea HOM05D002879 ORTHO05D002930 8.3e-12 73.9 48 68.8
MBI09_g23868_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 1.1e-11 73.6 86 70.9
Os02g0543000 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 1.1e-11 73.6 47 70.2
Potri.005G193800 Populus trichocarpa HOM05D002879 ORTHO05D002930 1.4e-11 73.2 83 44.6
Rhsim11G0084500 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.4e-11 73.2 100 55.0
vmacro01468 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.4e-11 73.2 46 67.4
TAR625G0963 Trochodendron aralioides HOM05D002879 ORTHO05D002930 1.9e-11 72.8 48 64.6
AUR62014500 Chenopodium quinoa HOM05D002879 ORTHO05D002930 2.4e-11 72.4 62 59.7
AUR62038035 Chenopodium quinoa HOM05D002879 ORTHO05D002930 2.4e-11 72.4 62 59.7
AUR62038038 Chenopodium quinoa HOM05D002879 ORTHO05D002930 2.4e-11 72.4 62 59.7
Sc26g0002520 Simmondsia chinensis HOM05D002879 ORTHO05D002930 2.4e-11 72.4 52 65.4
EL10Ac1g01570 Beta vulgaris HOM05D002879 ORTHO05D002930 4.1e-11 71.6 43 74.4
Migut.C00983 Erythranthe guttata HOM05D002879 ORTHO05D002930 7.0e-11 70.9 104 67.3
THA.LOC104809205 Tarenaya hassleriana HOM05D002879 ORTHO05D002930 1.2e-10 70.1 87 51.7
Sc26g0002530 Simmondsia chinensis HOM05D002879 ORTHO05D002930 1.6e-10 69.7 52 63.5
vmacro02691 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 2.0e-10 69.3 70 51.4
HPP92_009298 Vanilla planifolia HOM05D002879 ORTHO05D002930 2.0e-10 69.3 84 67.9
Actinidia17783 Actinidia chinensis HOM05D002879 ORTHO05D002930 3.5e-10 68.6 47 61.7
Rhsim11G0085000 Rhododendron simsii HOM05D002879 ORTHO05D002930 3.5e-10 68.6 44 70.5
TPR.G22164 Trifolium pratense HOM05D002879 ORTHO05D002930 3.5e-10 68.6 48 60.4
SEGI_40905 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 4.6e-10 68.2 86 46.5
arahy.Tifrunner.gnm1.ann1.4FY7U3 Arachis hypogaea HOM05D002879 ORTHO05D002930 6.0e-10 67.8 89 67.4
Ciclev10002644m.g Citrus clementina HOM05D002879 ORTHO05D002930 6.0e-10 67.8 47 66.0
Rhsim11G0084100 Rhododendron simsii HOM05D000132 ORTHO05D000058 6.0e-10 67.8 88 68.2
Hund26690 Selenicereus undatus HOM05D002879 ORTHO05D002930 6.0e-10 67.8 43 67.4
Medtr1g098680 Medicago truncatula HOM05D002879 ORTHO05D002930 7.8e-10 67.4 87 65.5
TWI34G0242 Tripterygium wilfordii HOM05D002879 ORTHO05D002930 7.8e-10 67.4 41 70.7
Rhsim11G0085100 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.0e-09 67.0 85 67.1
vmacro12405 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 1.0e-09 67.0 115 50.4
AUR62026684 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.3e-09 66.6 96 64.6
Os01g0959100 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 1.3e-09 66.6 40 67.5
Sc26g0002500 Simmondsia chinensis HOM05D002879 ORTHO05D002930 1.3e-09 66.6 90 65.6
EL10Ac1g00648 Beta vulgaris HOM05D002879 ORTHO05D002930 2.3e-09 65.9 68 52.9
Rhsim11G0084200 Rhododendron simsii HOM05D002879 ORTHO05D002930 2.3e-09 65.9 85 62.4
Rhsim13G0037600 Rhododendron simsii HOM05D002879 ORTHO05D002930 2.3e-09 65.9 73 50.7
Actinidia04759 Actinidia chinensis HOM05D002879 ORTHO05D002930 3.0e-09 65.5 86 62.8
EL10Ac1g01577 Beta vulgaris HOM05D002879 ORTHO05D002930 3.0e-09 65.5 44 61.4
Rhsim11G0084400 Rhododendron simsii HOM05D002879 ORTHO05D002930 3.0e-09 65.5 95 60.0
Rhsim11G0084700 Rhododendron simsii HOM05D002879 ORTHO05D002930 3.9e-09 65.1 79 65.8
Actinidia04758 Actinidia chinensis HOM05D002879 ORTHO05D002930 5.0e-09 64.7 66 53.0
Haze_17769 Corylus avellana HOM05D002879 ORTHO05D002930 5.0e-09 64.7 49 61.2
CSS0043717 Camellia sinensis var. sinensis HOM05D002879 ORTHO05D002930 6.6e-09 64.3 85 64.7
Sc26g0002490 Simmondsia chinensis HOM05D002879 ORTHO05D002930 6.6e-09 64.3 82 40.2
Actinidia29537 Actinidia chinensis HOM05D002879 ORTHO05D002930 8.6e-09 63.9 66 54.5
Ah.05g168060 Amaranthus hybridus HOM05D002879 ORTHO05D002930 8.6e-09 63.9 85 65.9
Eucgr.E02068 Eucalyptus grandis HOM05D002879 ORTHO05D002930 8.6e-09 63.9 48 62.5
vmacro01464 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 8.6e-09 63.9 85 65.9
vmacro01469 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 8.6e-09 63.9 85 67.1
vmacro23419 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 8.6e-09 63.9 85 65.9
Eucgr.E02063 Eucalyptus grandis HOM05D002879 ORTHO05D002930 1.1e-08 63.5 48 60.4
Nitab4.5_0001187g0080 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.1e-08 63.5 47 63.8
Sc02g0003910 Simmondsia chinensis HOM05D002879 ORTHO05D002930 1.5e-08 63.2 85 65.9
Eucgr.E02058 Eucalyptus grandis HOM05D002879 ORTHO05D002930 1.9e-08 62.8 90 60.0
Aqoxy5G02058 Aquilegia oxysepala HOM05D002879 ORTHO05D002930 2.5e-08 62.4 47 55.3
MD10G1029000 Malus domestica HOM05D002879 ORTHO05D002930 2.5e-08 62.4 92 40.2
vmacro02690 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 2.5e-08 62.4 70 58.6
Ca_23081_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 3.3e-08 62.0 43 60.5
TPR.G31183 Trifolium pratense HOM05D002879 ORTHO05D002930 3.3e-08 62.0 70 52.9
FAN24G2761 Fragaria x ananassa HOM05D002879 ORTHO05D002930 5.6e-08 61.2 89 66.3
vmacro12406 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 5.6e-08 61.2 45 57.8
QL02p029894 Quercus lobata HOM05D002255 ORTHO05D002288 7.3e-08 60.8 97 62.9
SEGI_08871 Sequoiadendron giganteum HOM05D002879 ORTHO05D002930 9.5e-08 60.5 89 41.6
Psat1g101880 Pisum sativum HOM05D002879 ORTHO05D002930 1.2e-07 60.1 70 45.7
CiPaw.15G015000 Carya illinoinensis HOM05D002879 ORTHO05D002930 1.6e-07 59.7 108 52.8
Rhsim11G0084300 Rhododendron simsii HOM05D002879 ORTHO05D002930 1.6e-07 59.7 79 65.8
Zm00001eb362480 Zea mays HOM05D002879 ORTHO05D002930 1.6e-07 59.7 45 55.6
Rhsim11G0084800 Rhododendron simsii HOM05D002879 ORTHO05D002930 2.8e-07 58.9 52 50.0
vmacro02689 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 2.8e-07 58.9 70 55.7
CAN.G264.4 Capsicum annuum HOM05D002879 ORTHO05D002930 3.6e-07 58.5 86 59.3
AUR62014501 Chenopodium quinoa HOM05D002879 ORTHO05D002930 3.6e-07 58.5 45 62.2
Oeu046047.1 Olea europaea HOM05D002879 ORTHO05D002930 3.6e-07 58.5 82 57.3
AUR62035549 Chenopodium quinoa HOM05D002879 ORTHO05D002930 4.7e-07 58.2 84 66.7
AUR62038034 Chenopodium quinoa HOM05D002879 ORTHO05D002930 4.7e-07 58.2 84 66.7
AUR62038037 Chenopodium quinoa HOM05D002879 ORTHO05D002930 4.7e-07 58.2 84 66.7
Migut.C00980 Erythranthe guttata HOM05D002879 ORTHO05D002930 4.7e-07 58.2 68 52.9
Lsat_1_v5_gn_9_41200 Lactuca sativa HOM05D002879 ORTHO05D002930 4.7e-07 58.2 46 58.7
vmacro01467 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 4.7e-07 58.2 45 57.8
MBI09_g20569_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 6.2e-07 57.8 86 62.8
MBI09_g23867_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 6.2e-07 57.8 86 62.8
Ca_12311_v3 Cicer arietinum L. HOM05D002879 ORTHO05D002930 8.0e-07 57.4 111 56.8
Rhsim11G0084600 Rhododendron simsii HOM05D002879 ORTHO05D002930 8.0e-07 57.4 52 50.0
Sc26g0003520 Simmondsia chinensis HOM05D002879 ORTHO05D002930 8.0e-07 57.4 82 67.1
Manes.02G180800 Manihot esculenta HOM05D002879 ORTHO05D002930 1.1e-06 57.0 95 40.0
Cpa.g.sc21.214 Carica papaya HOM05D002879 ORTHO05D002930 2.3e-06 55.8 85 54.1
AUR62026686 Chenopodium quinoa HOM05D002879 ORTHO05D002930 2.3e-06 55.8 90 60.0
arahy.Tifrunner.gnm1.ann1.BF4CMP Arachis hypogaea HOM05D002879 ORTHO05D002930 3.1e-06 55.5 51 54.9
Zm00001eb263060 Zea mays HOM05D002879 ORTHO05D002930 3.1e-06 55.5 46 52.2
Os01g0963600 Oryza sativa ssp. japonica HOM05D002879 ORTHO05D002930 4.0e-06 55.1 45 48.9
TAR381G1351 Trochodendron aralioides HOM05D002879 ORTHO05D002930 4.0e-06 55.1 112 51.8
Duzib116G0596 Durio zibethinus HOM05D002879 ORTHO05D002930 5.2e-06 54.7 86 40.7
Eucgr.E02071 Eucalyptus grandis HOM05D002879 ORTHO05D002930 5.2e-06 54.7 78 42.3
Cc10_g14940 Coffea canephora HOM05D002879 ORTHO05D002930 8.9e-06 53.9 110 53.6


User provided reference genes

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